diff --git a/Doxyfile.in b/Doxyfile.in
index e02008a14..8adf83c7f 100644
--- a/Doxyfile.in
+++ b/Doxyfile.in
@@ -743,7 +743,7 @@ WARN_LOGFILE           =
 # spaces.
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = @SRC_DIR@/src/
+INPUT                  = @SRC_DIR@/
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -763,7 +763,7 @@ INPUT_ENCODING         = UTF-8
 # *.md, *.mm, *.dox, *.py, *.f90, *.f, *.for, *.tcl, *.vhd, *.vhdl, *.ucf,
 # *.qsf, *.as and *.js.
 
-FILE_PATTERNS          = *.h
+FILE_PATTERNS          = *.h *.md
 
 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.