64 lines
2.3 KiB
Groff
64 lines
2.3 KiB
Groff
--$Revision: 6.1 $
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--********************************************************************
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--
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-- Direct Submission of Sequence Data
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-- James Ostell, 1991
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--
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-- This is a trial specification for direct submission of sequence
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-- data worked out between NCBI and EMBL
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-- Later revised to reflect work with GenBank and Integrated database
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--
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-- Version 3.0, 1994
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-- This is the official NCBI sequence submission format now.
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--
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--********************************************************************
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NCBI-Submit DEFINITIONS ::=
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BEGIN
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EXPORTS Seq-submit, Contact-info;
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IMPORTS Cit-sub, Author FROM NCBI-Biblio
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Date, Object-id FROM NCBI-General
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Seq-annot FROM NCBI-Sequence
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Seq-id FROM NCBI-Seqloc
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Seq-entry FROM NCBI-Seqset;
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Seq-submit ::= SEQUENCE {
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sub Submit-block ,
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data CHOICE {
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entrys SET OF Seq-entry , -- sequence(s)
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annots SET OF Seq-annot , -- annotation(s)
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delete SET OF Seq-id } } -- deletions of entries
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Submit-block ::= SEQUENCE {
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contact Contact-info , -- who to contact
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cit Cit-sub , -- citation for this submission
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hup BOOLEAN DEFAULT FALSE , -- hold until publish
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reldate Date OPTIONAL , -- release by date
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subtype INTEGER { -- type of submission
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new (1) , -- new data
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update (2) , -- update by author
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revision (3) , -- 3rd party (non-author) update
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other (255) } OPTIONAL ,
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tool VisibleString OPTIONAL, -- tool used to make submission
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user-tag VisibleString OPTIONAL, -- user supplied id for this submission
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comment VisibleString OPTIONAL } -- user comments/advice to database
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Contact-info ::= SEQUENCE { -- who to contact to discuss the submission
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name VisibleString OPTIONAL , -- OBSOLETE: will be removed
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address SEQUENCE OF VisibleString OPTIONAL ,
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phone VisibleString OPTIONAL ,
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fax VisibleString OPTIONAL ,
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email VisibleString OPTIONAL ,
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telex VisibleString OPTIONAL ,
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owner-id Object-id OPTIONAL , -- for owner accounts
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password OCTET STRING OPTIONAL ,
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last-name VisibleString OPTIONAL , -- structured to replace name above
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first-name VisibleString OPTIONAL ,
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middle-initial VisibleString OPTIONAL ,
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contact Author OPTIONAL } -- WARNING: this will replace the above
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END
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