62 lines
1.5 KiB
Groff
62 lines
1.5 KiB
Groff
--$Revision: 525462 $
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--*********************************************************************
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--
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-- biotree.asn
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--
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-- BioTree ASN
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-- Anatoliy Kuznetsov
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--
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--*********************************************************************
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NCBI-BioTree DEFINITIONS ::=
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BEGIN
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EXPORTS BioTreeContainer, FeatureDictSet, DistanceMatrix;
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IMPORTS User-object, User-field FROM NCBI-General;
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BioTreeContainer ::= SEQUENCE {
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treetype VisibleString OPTIONAL, -- hint on what kind of tree this is
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fdict FeatureDictSet, -- features dictionary
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nodes NodeSet, -- set of nodes with encoded topology
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label VisibleString OPTIONAL, -- bio-tree label (short name)
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user User-object OPTIONAL -- user defined object
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}
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NodeSet ::= SET OF Node
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Node ::= SEQUENCE {
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id INTEGER, -- node uid
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parent INTEGER OPTIONAL, -- parent node id
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features NodeFeatureSet OPTIONAL
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}
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NodeFeatureSet ::= SET OF NodeFeature
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NodeFeature ::= SEQUENCE {
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featureid INTEGER,
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value UTF8String
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}
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FeatureDictSet ::= SET OF FeatureDescr
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FeatureDescr ::= SEQUENCE {
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id INTEGER, -- feature id
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name VisibleString -- feature name
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}
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DistanceMatrix ::= SEQUENCE {
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labels SEQUENCE OF VisibleString, -- n labels
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distances SEQUENCE OF REAL -- n(n-1)/2 pairwise distances
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-- (0, 1)...(0, n), (1, 2)...(1, n)...
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}
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END
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