# -*- coding: UTF-8 -*- # Code automatically generated by pycrate_asn1c from pycrate_asn1rt.utils import * from pycrate_asn1rt.err import * from pycrate_asn1rt.glob import make_GLOBAL, GLOBAL from pycrate_asn1rt.dictobj import ASN1Dict from pycrate_asn1rt.refobj import * from pycrate_asn1rt.setobj import * from pycrate_asn1rt.asnobj_basic import * from pycrate_asn1rt.asnobj_str import * from pycrate_asn1rt.asnobj_construct import * from pycrate_asn1rt.asnobj_class import * from pycrate_asn1rt.asnobj_ext import * from pycrate_asn1rt.init import init_modules class NCBI_Access: _name_ = u'NCBI-Access' _oid_ = [] _obj_ = [ u'Link-set', ] _type_ = [ u'Link-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Link-set >-----# Link_set = SEQ(name=u'Link-set', mode=MODE_TYPE) _Link_set_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Link_set_uids = SEQ_OF(name=u'uids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Link_set_uids__item_ = INT(name='_item_', mode=MODE_TYPE) _Link_set_uids._cont = __Link_set_uids__item_ _Link_set_weights = SEQ_OF(name=u'weights', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Link_set_weights__item_ = INT(name='_item_', mode=MODE_TYPE) _Link_set_weights._cont = __Link_set_weights__item_ Link_set._cont = ASN1Dict([ (u'num', _Link_set_num), (u'uids', _Link_set_uids), (u'weights', _Link_set_weights), ]) Link_set._ext = None _all_ = [ _Link_set_num, __Link_set_uids__item_, _Link_set_uids, __Link_set_weights__item_, _Link_set_weights, Link_set, ] class NCBI_Biblio: _name_ = u'NCBI-Biblio' _oid_ = [] _obj_ = [ u'ArticleId', u'PubMedId', u'MedlineUID', u'DOI', u'PII', u'PmcID', u'PmcPid', u'PmPid', u'ArticleIdSet', u'PubStatus', u'PubStatusDate', u'PubStatusDateSet', u'Cit-art', u'Cit-jour', u'Cit-book', u'Cit-proc', u'Cit-pat', u'Patent-priority', u'Id-pat', u'Cit-let', u'Cit-sub', u'Cit-gen', u'Auth-list', u'Author', u'Affil', u'Title', u'Imprint', u'CitRetract', u'Meeting', ] _type_ = [ u'ArticleId', u'PubMedId', u'MedlineUID', u'DOI', u'PII', u'PmcID', u'PmcPid', u'PmPid', u'ArticleIdSet', u'PubStatus', u'PubStatusDate', u'PubStatusDateSet', u'Cit-art', u'Cit-jour', u'Cit-book', u'Cit-proc', u'Cit-pat', u'Patent-priority', u'Id-pat', u'Cit-let', u'Cit-sub', u'Cit-gen', u'Auth-list', u'Author', u'Affil', u'Title', u'Imprint', u'CitRetract', u'Meeting', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< ArticleId >-----# ArticleId = CHOICE(name=u'ArticleId', mode=MODE_TYPE) _ArticleId_pubmed = INT(name=u'pubmed', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _ArticleId_medline = INT(name=u'medline', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'MedlineUID'))) _ArticleId_doi = STR_VIS(name=u'doi', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'DOI'))) _ArticleId_pii = STR_VIS(name=u'pii', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PII'))) _ArticleId_pmcid = INT(name=u'pmcid', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PmcID'))) _ArticleId_pmcpid = STR_VIS(name=u'pmcpid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PmcPid'))) _ArticleId_pmpid = STR_VIS(name=u'pmpid', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PmPid'))) _ArticleId_other = SEQ(name=u'other', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) ArticleId._cont = ASN1Dict([ (u'pubmed', _ArticleId_pubmed), (u'medline', _ArticleId_medline), (u'doi', _ArticleId_doi), (u'pii', _ArticleId_pii), (u'pmcid', _ArticleId_pmcid), (u'pmcpid', _ArticleId_pmcpid), (u'pmpid', _ArticleId_pmpid), (u'other', _ArticleId_other), ]) ArticleId._ext = None #-----< PubMedId >-----# PubMedId = INT(name=u'PubMedId', mode=MODE_TYPE) #-----< MedlineUID >-----# MedlineUID = INT(name=u'MedlineUID', mode=MODE_TYPE) #-----< DOI >-----# DOI = STR_VIS(name=u'DOI', mode=MODE_TYPE) #-----< PII >-----# PII = STR_VIS(name=u'PII', mode=MODE_TYPE) #-----< PmcID >-----# PmcID = INT(name=u'PmcID', mode=MODE_TYPE) #-----< PmcPid >-----# PmcPid = STR_VIS(name=u'PmcPid', mode=MODE_TYPE) #-----< PmPid >-----# PmPid = STR_VIS(name=u'PmPid', mode=MODE_TYPE) #-----< ArticleIdSet >-----# ArticleIdSet = SET_OF(name=u'ArticleIdSet', mode=MODE_TYPE) _ArticleIdSet__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'ArticleId'))) ArticleIdSet._cont = _ArticleIdSet__item_ #-----< PubStatus >-----# PubStatus = INT(name=u'PubStatus', mode=MODE_TYPE) PubStatus._cont = ASN1Dict([(u'received', 1), (u'accepted', 2), (u'epublish', 3), (u'ppublish', 4), (u'revised', 5), (u'pmc', 6), (u'pmcr', 7), (u'pubmed', 8), (u'pubmedr', 9), (u'aheadofprint', 10), (u'premedline', 11), (u'medline', 12), (u'other', 255)]) #-----< PubStatusDate >-----# PubStatusDate = SEQ(name=u'PubStatusDate', mode=MODE_TYPE) _PubStatusDate_pubstatus = INT(name=u'pubstatus', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubStatus'))) _PubStatusDate_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) PubStatusDate._cont = ASN1Dict([ (u'pubstatus', _PubStatusDate_pubstatus), (u'date', _PubStatusDate_date), ]) PubStatusDate._ext = None #-----< PubStatusDateSet >-----# PubStatusDateSet = SET_OF(name=u'PubStatusDateSet', mode=MODE_TYPE) _PubStatusDateSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'PubStatusDate'))) PubStatusDateSet._cont = _PubStatusDateSet__item_ #-----< Cit-art >-----# Cit_art = SEQ(name=u'Cit-art', mode=MODE_TYPE) _Cit_art_title = SET_OF(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Title')), opt=True) _Cit_art_authors = SEQ(name=u'authors', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list')), opt=True) _Cit_art_from_ = CHOICE(name=u'from', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Cit_art_from__journal = SEQ(name=u'journal', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-jour'))) __Cit_art_from__book = SEQ(name=u'book', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-book'))) __Cit_art_from__proc = SEQ(name=u'proc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-proc'))) _Cit_art_from_._cont = ASN1Dict([ (u'journal', __Cit_art_from__journal), (u'book', __Cit_art_from__book), (u'proc', __Cit_art_from__proc), ]) _Cit_art_from_._ext = None _Cit_art_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'ArticleIdSet')), opt=True) Cit_art._cont = ASN1Dict([ (u'title', _Cit_art_title), (u'authors', _Cit_art_authors), (u'from', _Cit_art_from_), (u'ids', _Cit_art_ids), ]) Cit_art._ext = None #-----< Cit-jour >-----# Cit_jour = SEQ(name=u'Cit-jour', mode=MODE_TYPE) _Cit_jour_title = SET_OF(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Title'))) _Cit_jour_imp = SEQ(name=u'imp', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Imprint'))) Cit_jour._cont = ASN1Dict([ (u'title', _Cit_jour_title), (u'imp', _Cit_jour_imp), ]) Cit_jour._ext = None #-----< Cit-book >-----# Cit_book = SEQ(name=u'Cit-book', mode=MODE_TYPE) _Cit_book_title = SET_OF(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Title'))) _Cit_book_coll = SET_OF(name=u'coll', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Title')), opt=True) _Cit_book_authors = SEQ(name=u'authors', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list'))) _Cit_book_imp = SEQ(name=u'imp', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Imprint'))) Cit_book._cont = ASN1Dict([ (u'title', _Cit_book_title), (u'coll', _Cit_book_coll), (u'authors', _Cit_book_authors), (u'imp', _Cit_book_imp), ]) Cit_book._ext = None #-----< Cit-proc >-----# Cit_proc = SEQ(name=u'Cit-proc', mode=MODE_TYPE) _Cit_proc_book = SEQ(name=u'book', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-book'))) _Cit_proc_meet = SEQ(name=u'meet', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Meeting'))) Cit_proc._cont = ASN1Dict([ (u'book', _Cit_proc_book), (u'meet', _Cit_proc_meet), ]) Cit_proc._ext = None #-----< Cit-pat >-----# Cit_pat = SEQ(name=u'Cit-pat', mode=MODE_TYPE) _Cit_pat_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cit_pat_authors = SEQ(name=u'authors', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list'))) _Cit_pat_country = STR_VIS(name=u'country', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cit_pat_doc_type = STR_VIS(name=u'doc-type', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cit_pat_number = STR_VIS(name=u'number', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_pat_date_issue = CHOICE(name=u'date-issue', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Cit_pat_class_ = SEQ_OF(name=u'class', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cit_pat_class___item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Cit_pat_class_._cont = __Cit_pat_class___item_ _Cit_pat_app_number = STR_VIS(name=u'app-number', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_pat_app_date = CHOICE(name=u'app-date', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Cit_pat_applicants = SEQ(name=u'applicants', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list')), opt=True) _Cit_pat_assignees = SEQ(name=u'assignees', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list')), opt=True) _Cit_pat_priority = SEQ_OF(name=u'priority', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cit_pat_priority__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Patent-priority'))) _Cit_pat_priority._cont = __Cit_pat_priority__item_ _Cit_pat_abstract = STR_VIS(name=u'abstract', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cit_pat._cont = ASN1Dict([ (u'title', _Cit_pat_title), (u'authors', _Cit_pat_authors), (u'country', _Cit_pat_country), (u'doc-type', _Cit_pat_doc_type), (u'number', _Cit_pat_number), (u'date-issue', _Cit_pat_date_issue), (u'class', _Cit_pat_class_), (u'app-number', _Cit_pat_app_number), (u'app-date', _Cit_pat_app_date), (u'applicants', _Cit_pat_applicants), (u'assignees', _Cit_pat_assignees), (u'priority', _Cit_pat_priority), (u'abstract', _Cit_pat_abstract), ]) Cit_pat._ext = None #-----< Patent-priority >-----# Patent_priority = SEQ(name=u'Patent-priority', mode=MODE_TYPE) _Patent_priority_country = STR_VIS(name=u'country', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Patent_priority_number = STR_VIS(name=u'number', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Patent_priority_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) Patent_priority._cont = ASN1Dict([ (u'country', _Patent_priority_country), (u'number', _Patent_priority_number), (u'date', _Patent_priority_date), ]) Patent_priority._ext = None #-----< Id-pat >-----# Id_pat = SEQ(name=u'Id-pat', mode=MODE_TYPE) _Id_pat_country = STR_VIS(name=u'country', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Id_pat_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Id_pat_id_number = STR_VIS(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Id_pat_id_app_number = STR_VIS(name=u'app-number', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Id_pat_id._cont = ASN1Dict([ (u'number', __Id_pat_id_number), (u'app-number', __Id_pat_id_app_number), ]) _Id_pat_id._ext = None _Id_pat_doc_type = STR_VIS(name=u'doc-type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Id_pat._cont = ASN1Dict([ (u'country', _Id_pat_country), (u'id', _Id_pat_id), (u'doc-type', _Id_pat_doc_type), ]) Id_pat._ext = None #-----< Cit-let >-----# Cit_let = SEQ(name=u'Cit-let', mode=MODE_TYPE) _Cit_let_cit = SEQ(name=u'cit', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-book'))) _Cit_let_man_id = STR_VIS(name=u'man-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_let_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_let_type._cont = ASN1Dict([(u'manuscript', 1), (u'letter', 2), (u'thesis', 3)]) _Cit_let_type._ext = None Cit_let._cont = ASN1Dict([ (u'cit', _Cit_let_cit), (u'man-id', _Cit_let_man_id), (u'type', _Cit_let_type), ]) Cit_let._ext = None #-----< Cit-sub >-----# Cit_sub = SEQ(name=u'Cit-sub', mode=MODE_TYPE) _Cit_sub_authors = SEQ(name=u'authors', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list'))) _Cit_sub_imp = SEQ(name=u'imp', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Imprint')), opt=True) _Cit_sub_medium = ENUM(name=u'medium', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_sub_medium._cont = ASN1Dict([(u'paper', 1), (u'tape', 2), (u'floppy', 3), (u'email', 4), (u'other', 255)]) _Cit_sub_medium._ext = None _Cit_sub_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Cit_sub_descr = STR_VIS(name=u'descr', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cit_sub._cont = ASN1Dict([ (u'authors', _Cit_sub_authors), (u'imp', _Cit_sub_imp), (u'medium', _Cit_sub_medium), (u'date', _Cit_sub_date), (u'descr', _Cit_sub_descr), ]) Cit_sub._ext = None #-----< Cit-gen >-----# Cit_gen = SEQ(name=u'Cit-gen', mode=MODE_TYPE) _Cit_gen_cit = STR_VIS(name=u'cit', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_authors = SEQ(name=u'authors', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Auth-list')), opt=True) _Cit_gen_muid = INT(name=u'muid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_journal = SET_OF(name=u'journal', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Title')), opt=True) _Cit_gen_volume = STR_VIS(name=u'volume', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_issue = STR_VIS(name=u'issue', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_pages = STR_VIS(name=u'pages', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Cit_gen_serial_number = INT(name=u'serial-number', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cit_gen_pmid = INT(name=u'pmid', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId')), opt=True) Cit_gen._cont = ASN1Dict([ (u'cit', _Cit_gen_cit), (u'authors', _Cit_gen_authors), (u'muid', _Cit_gen_muid), (u'journal', _Cit_gen_journal), (u'volume', _Cit_gen_volume), (u'issue', _Cit_gen_issue), (u'pages', _Cit_gen_pages), (u'date', _Cit_gen_date), (u'serial-number', _Cit_gen_serial_number), (u'title', _Cit_gen_title), (u'pmid', _Cit_gen_pmid), ]) Cit_gen._ext = None #-----< Auth-list >-----# Auth_list = SEQ(name=u'Auth-list', mode=MODE_TYPE) _Auth_list_names = CHOICE(name=u'names', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Auth_list_names_std = SEQ_OF(name=u'std', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Auth_list_names_std__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Author'))) __Auth_list_names_std._cont = ___Auth_list_names_std__item_ __Auth_list_names_ml = SEQ_OF(name=u'ml', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Auth_list_names_ml__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) __Auth_list_names_ml._cont = ___Auth_list_names_ml__item_ __Auth_list_names_str = SEQ_OF(name=u'str', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Auth_list_names_str__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) __Auth_list_names_str._cont = ___Auth_list_names_str__item_ _Auth_list_names._cont = ASN1Dict([ (u'std', __Auth_list_names_std), (u'ml', __Auth_list_names_ml), (u'str', __Auth_list_names_str), ]) _Auth_list_names._ext = None _Auth_list_affil = CHOICE(name=u'affil', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Affil')), opt=True) Auth_list._cont = ASN1Dict([ (u'names', _Auth_list_names), (u'affil', _Auth_list_affil), ]) Auth_list._ext = None #-----< Author >-----# Author = SEQ(name=u'Author', mode=MODE_TYPE) _Author_name = CHOICE(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Person-id'))) _Author_level = ENUM(name=u'level', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Author_level._cont = ASN1Dict([(u'primary', 1), (u'secondary', 2)]) _Author_level._ext = None _Author_role = ENUM(name=u'role', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Author_role._cont = ASN1Dict([(u'compiler', 1), (u'editor', 2), (u'patent-assignee', 3), (u'translator', 4)]) _Author_role._ext = None _Author_affil = CHOICE(name=u'affil', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Affil')), opt=True) _Author_is_corr = BOOL(name=u'is-corr', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Author._cont = ASN1Dict([ (u'name', _Author_name), (u'level', _Author_level), (u'role', _Author_role), (u'affil', _Author_affil), (u'is-corr', _Author_is_corr), ]) Author._ext = None #-----< Affil >-----# Affil = CHOICE(name=u'Affil', mode=MODE_TYPE) _Affil_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Affil_std = SEQ(name=u'std', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Affil_std_affil = STR_VIS(name=u'affil', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_div = STR_VIS(name=u'div', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_city = STR_VIS(name=u'city', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_sub = STR_VIS(name=u'sub', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_country = STR_VIS(name=u'country', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_street = STR_VIS(name=u'street', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_email = STR_VIS(name=u'email', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_fax = STR_VIS(name=u'fax', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_phone = STR_VIS(name=u'phone', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Affil_std_postal_code = STR_VIS(name=u'postal-code', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Affil_std._cont = ASN1Dict([ (u'affil', __Affil_std_affil), (u'div', __Affil_std_div), (u'city', __Affil_std_city), (u'sub', __Affil_std_sub), (u'country', __Affil_std_country), (u'street', __Affil_std_street), (u'email', __Affil_std_email), (u'fax', __Affil_std_fax), (u'phone', __Affil_std_phone), (u'postal-code', __Affil_std_postal_code), ]) _Affil_std._ext = None Affil._cont = ASN1Dict([ (u'str', _Affil_str), (u'std', _Affil_std), ]) Affil._ext = None #-----< Title >-----# Title = SET_OF(name=u'Title', mode=MODE_TYPE) _Title__item_ = CHOICE(name='_item_', mode=MODE_TYPE) __Title__item__name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__tsub = STR_VIS(name=u'tsub', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__trans = STR_VIS(name=u'trans', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__jta = STR_VIS(name=u'jta', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__iso_jta = STR_VIS(name=u'iso-jta', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__ml_jta = STR_VIS(name=u'ml-jta', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__coden = STR_VIS(name=u'coden', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__issn = STR_VIS(name=u'issn', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__abr = STR_VIS(name=u'abr', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title__item__isbn = STR_VIS(name=u'isbn', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Title__item_._cont = ASN1Dict([ (u'name', __Title__item__name), (u'tsub', __Title__item__tsub), (u'trans', __Title__item__trans), (u'jta', __Title__item__jta), (u'iso-jta', __Title__item__iso_jta), (u'ml-jta', __Title__item__ml_jta), (u'coden', __Title__item__coden), (u'issn', __Title__item__issn), (u'abr', __Title__item__abr), (u'isbn', __Title__item__isbn), ]) _Title__item_._ext = None Title._cont = _Title__item_ #-----< Imprint >-----# Imprint = SEQ(name=u'Imprint', mode=MODE_TYPE) _Imprint_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Imprint_volume = STR_VIS(name=u'volume', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_issue = STR_VIS(name=u'issue', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_pages = STR_VIS(name=u'pages', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_section = STR_VIS(name=u'section', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_pub = CHOICE(name=u'pub', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Affil')), opt=True) _Imprint_cprt = CHOICE(name=u'cprt', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Imprint_part_sup = STR_VIS(name=u'part-sup', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_language = STR_VIS(name=u'language', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'ENG') _Imprint_prepub = ENUM(name=u'prepub', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_prepub._cont = ASN1Dict([(u'submitted', 1), (u'in-press', 2), (u'other', 255)]) _Imprint_prepub._ext = None _Imprint_part_supi = STR_VIS(name=u'part-supi', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imprint_retract = SEQ(name=u'retract', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'CitRetract')), opt=True) _Imprint_pubstatus = INT(name=u'pubstatus', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubStatus')), opt=True) _Imprint_history = SET_OF(name=u'history', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubStatusDateSet')), opt=True) Imprint._cont = ASN1Dict([ (u'date', _Imprint_date), (u'volume', _Imprint_volume), (u'issue', _Imprint_issue), (u'pages', _Imprint_pages), (u'section', _Imprint_section), (u'pub', _Imprint_pub), (u'cprt', _Imprint_cprt), (u'part-sup', _Imprint_part_sup), (u'language', _Imprint_language), (u'prepub', _Imprint_prepub), (u'part-supi', _Imprint_part_supi), (u'retract', _Imprint_retract), (u'pubstatus', _Imprint_pubstatus), (u'history', _Imprint_history), ]) Imprint._ext = None #-----< CitRetract >-----# CitRetract = SEQ(name=u'CitRetract', mode=MODE_TYPE) _CitRetract_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _CitRetract_type._cont = ASN1Dict([(u'retracted', 1), (u'notice', 2), (u'in-error', 3), (u'erratum', 4)]) _CitRetract_type._ext = None _CitRetract_exp = STR_VIS(name=u'exp', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) CitRetract._cont = ASN1Dict([ (u'type', _CitRetract_type), (u'exp', _CitRetract_exp), ]) CitRetract._ext = None #-----< Meeting >-----# Meeting = SEQ(name=u'Meeting', mode=MODE_TYPE) _Meeting_number = STR_VIS(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Meeting_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Meeting_place = CHOICE(name=u'place', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Affil')), opt=True) Meeting._cont = ASN1Dict([ (u'number', _Meeting_number), (u'date', _Meeting_date), (u'place', _Meeting_place), ]) Meeting._ext = None _all_ = [ _ArticleId_pubmed, _ArticleId_medline, _ArticleId_doi, _ArticleId_pii, _ArticleId_pmcid, _ArticleId_pmcpid, _ArticleId_pmpid, _ArticleId_other, ArticleId, PubMedId, MedlineUID, DOI, PII, PmcID, PmcPid, PmPid, _ArticleIdSet__item_, ArticleIdSet, PubStatus, _PubStatusDate_pubstatus, _PubStatusDate_date, PubStatusDate, _PubStatusDateSet__item_, PubStatusDateSet, _Cit_art_title, _Cit_art_authors, __Cit_art_from__journal, __Cit_art_from__book, __Cit_art_from__proc, _Cit_art_from_, _Cit_art_ids, Cit_art, _Cit_jour_title, _Cit_jour_imp, Cit_jour, _Cit_book_title, _Cit_book_coll, _Cit_book_authors, _Cit_book_imp, Cit_book, _Cit_proc_book, _Cit_proc_meet, Cit_proc, _Cit_pat_title, _Cit_pat_authors, _Cit_pat_country, _Cit_pat_doc_type, _Cit_pat_number, _Cit_pat_date_issue, __Cit_pat_class___item_, _Cit_pat_class_, _Cit_pat_app_number, _Cit_pat_app_date, _Cit_pat_applicants, _Cit_pat_assignees, __Cit_pat_priority__item_, _Cit_pat_priority, _Cit_pat_abstract, Cit_pat, _Patent_priority_country, _Patent_priority_number, _Patent_priority_date, Patent_priority, _Id_pat_country, __Id_pat_id_number, __Id_pat_id_app_number, _Id_pat_id, _Id_pat_doc_type, Id_pat, _Cit_let_cit, _Cit_let_man_id, _Cit_let_type, Cit_let, _Cit_sub_authors, _Cit_sub_imp, _Cit_sub_medium, _Cit_sub_date, _Cit_sub_descr, Cit_sub, _Cit_gen_cit, _Cit_gen_authors, _Cit_gen_muid, _Cit_gen_journal, _Cit_gen_volume, _Cit_gen_issue, _Cit_gen_pages, _Cit_gen_date, _Cit_gen_serial_number, _Cit_gen_title, _Cit_gen_pmid, Cit_gen, ___Auth_list_names_std__item_, __Auth_list_names_std, ___Auth_list_names_ml__item_, __Auth_list_names_ml, ___Auth_list_names_str__item_, __Auth_list_names_str, _Auth_list_names, _Auth_list_affil, Auth_list, _Author_name, _Author_level, _Author_role, _Author_affil, _Author_is_corr, Author, _Affil_str, __Affil_std_affil, __Affil_std_div, __Affil_std_city, __Affil_std_sub, __Affil_std_country, __Affil_std_street, __Affil_std_email, __Affil_std_fax, __Affil_std_phone, __Affil_std_postal_code, _Affil_std, Affil, __Title__item__name, __Title__item__tsub, __Title__item__trans, __Title__item__jta, __Title__item__iso_jta, __Title__item__ml_jta, __Title__item__coden, __Title__item__issn, __Title__item__abr, __Title__item__isbn, _Title__item_, Title, _Imprint_date, _Imprint_volume, _Imprint_issue, _Imprint_pages, _Imprint_section, _Imprint_pub, _Imprint_cprt, _Imprint_part_sup, _Imprint_language, _Imprint_prepub, _Imprint_part_supi, _Imprint_retract, _Imprint_pubstatus, _Imprint_history, Imprint, _CitRetract_type, _CitRetract_exp, CitRetract, _Meeting_number, _Meeting_date, _Meeting_place, Meeting, ] class NCBI_BioTree: _name_ = u'NCBI-BioTree' _oid_ = [] _obj_ = [ u'BioTreeContainer', u'NodeSet', u'Node', u'NodeFeatureSet', u'NodeFeature', u'FeatureDictSet', u'FeatureDescr', u'DistanceMatrix', ] _type_ = [ u'BioTreeContainer', u'NodeSet', u'Node', u'NodeFeatureSet', u'NodeFeature', u'FeatureDictSet', u'FeatureDescr', u'DistanceMatrix', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< BioTreeContainer >-----# BioTreeContainer = SEQ(name=u'BioTreeContainer', mode=MODE_TYPE) _BioTreeContainer_treetype = STR_VIS(name=u'treetype', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BioTreeContainer_fdict = SET_OF(name=u'fdict', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioTree', 'FeatureDictSet'))) _BioTreeContainer_nodes = SET_OF(name=u'nodes', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioTree', 'NodeSet'))) _BioTreeContainer_label = STR_VIS(name=u'label', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BioTreeContainer_user = SEQ(name=u'user', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object')), opt=True) BioTreeContainer._cont = ASN1Dict([ (u'treetype', _BioTreeContainer_treetype), (u'fdict', _BioTreeContainer_fdict), (u'nodes', _BioTreeContainer_nodes), (u'label', _BioTreeContainer_label), (u'user', _BioTreeContainer_user), ]) BioTreeContainer._ext = None #-----< NodeSet >-----# NodeSet = SET_OF(name=u'NodeSet', mode=MODE_TYPE) _NodeSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BioTree', 'Node'))) NodeSet._cont = _NodeSet__item_ #-----< Node >-----# Node = SEQ(name=u'Node', mode=MODE_TYPE) _Node_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Node_parent = INT(name=u'parent', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Node_features = SET_OF(name=u'features', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioTree', 'NodeFeatureSet')), opt=True) Node._cont = ASN1Dict([ (u'id', _Node_id), (u'parent', _Node_parent), (u'features', _Node_features), ]) Node._ext = None #-----< NodeFeatureSet >-----# NodeFeatureSet = SET_OF(name=u'NodeFeatureSet', mode=MODE_TYPE) _NodeFeatureSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BioTree', 'NodeFeature'))) NodeFeatureSet._cont = _NodeFeatureSet__item_ #-----< NodeFeature >-----# NodeFeature = SEQ(name=u'NodeFeature', mode=MODE_TYPE) _NodeFeature_featureid = INT(name=u'featureid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _NodeFeature_value = STR_UTF8(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) NodeFeature._cont = ASN1Dict([ (u'featureid', _NodeFeature_featureid), (u'value', _NodeFeature_value), ]) NodeFeature._ext = None #-----< FeatureDictSet >-----# FeatureDictSet = SET_OF(name=u'FeatureDictSet', mode=MODE_TYPE) _FeatureDictSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BioTree', 'FeatureDescr'))) FeatureDictSet._cont = _FeatureDictSet__item_ #-----< FeatureDescr >-----# FeatureDescr = SEQ(name=u'FeatureDescr', mode=MODE_TYPE) _FeatureDescr_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatureDescr_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) FeatureDescr._cont = ASN1Dict([ (u'id', _FeatureDescr_id), (u'name', _FeatureDescr_name), ]) FeatureDescr._ext = None #-----< DistanceMatrix >-----# DistanceMatrix = SEQ(name=u'DistanceMatrix', mode=MODE_TYPE) _DistanceMatrix_labels = SEQ_OF(name=u'labels', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __DistanceMatrix_labels__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _DistanceMatrix_labels._cont = __DistanceMatrix_labels__item_ _DistanceMatrix_distances = SEQ_OF(name=u'distances', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __DistanceMatrix_distances__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _DistanceMatrix_distances._cont = __DistanceMatrix_distances__item_ DistanceMatrix._cont = ASN1Dict([ (u'labels', _DistanceMatrix_labels), (u'distances', _DistanceMatrix_distances), ]) DistanceMatrix._ext = None _all_ = [ _BioTreeContainer_treetype, _BioTreeContainer_fdict, _BioTreeContainer_nodes, _BioTreeContainer_label, _BioTreeContainer_user, BioTreeContainer, _NodeSet__item_, NodeSet, _Node_id, _Node_parent, _Node_features, Node, _NodeFeatureSet__item_, NodeFeatureSet, _NodeFeature_featureid, _NodeFeature_value, NodeFeature, _FeatureDictSet__item_, FeatureDictSet, _FeatureDescr_id, _FeatureDescr_name, FeatureDescr, __DistanceMatrix_labels__item_, _DistanceMatrix_labels, __DistanceMatrix_distances__item_, _DistanceMatrix_distances, DistanceMatrix, ] class NCBI_Blast4: _name_ = u'NCBI-Blast4' _oid_ = [] _obj_ = [ u'BigInt', u'Blast4-request', u'Blast4-archive', u'Blast4-request-body', u'Blast4-get-databases-ex-request', u'Blast4-finish-params-request', u'Blast4-result-types', u'Blast4-get-search-results-request', u'Blast4-queries', u'Blast4-queue-search-request', u'Blast4-get-search-status-request', u'Blast4-get-search-status-reply', u'Blast4-get-request-info-request', u'Blast4-get-request-info-reply', u'Blast4-get-search-strategy-request', u'Blast4-get-search-strategy-reply', u'Blast4-get-sequences-request', u'Blast4-get-seq-parts-request', u'Blast4-get-protocol-info-request', u'Blast4-get-search-info-request', u'Blast4-reply', u'Blast4-reply-body', u'Blast4-finish-params-reply', u'Blast4-get-windowmasked-taxids-reply', u'Blast4-get-databases-reply', u'Blast4-get-databases-ex-reply', u'Blast4-get-matrices-reply', u'Blast4-get-parameters-reply', u'Blast4-get-paramsets-reply', u'Blast4-get-programs-reply', u'Blast4-get-search-results-reply', u'Blast4-get-sequences-reply', u'Blast4-seq-part-data', u'Blast4-get-seq-parts-reply', u'Blast4-queue-search-reply', u'Blast4-get-queries-reply', u'Blast4-get-protocol-info-reply', u'Blast4-get-search-info-reply', u'Blast4-error', u'Blast4-error-flags', u'Blast4-error-code', u'Blast4-cutoff', u'Blast4-database', u'Blast4-seqtech', u'Blast4-database-info', u'Blast4-frame-type', u'Blast4-ka-block', u'Blast4-mask', u'Blast4-matrix-id', u'Blast4-parameter', u'Blast4-parameter-info', u'Blast4-task-info', u'Blast4-program-info', u'Blast4-residue-type', u'Blast4-strand-type', u'Blast4-subject', u'Blast4-parameters', u'Blast4-phi-alignments', u'Blast4-value', u'Blast4-simple-results', u'Blast4-alignments-for-query', u'Blast4-simple-alignment', u'Blast4-range', ] _type_ = [ u'BigInt', u'Blast4-request', u'Blast4-archive', u'Blast4-request-body', u'Blast4-get-databases-ex-request', u'Blast4-finish-params-request', u'Blast4-result-types', u'Blast4-get-search-results-request', u'Blast4-queries', u'Blast4-queue-search-request', u'Blast4-get-search-status-request', u'Blast4-get-search-status-reply', u'Blast4-get-request-info-request', u'Blast4-get-request-info-reply', u'Blast4-get-search-strategy-request', u'Blast4-get-search-strategy-reply', u'Blast4-get-sequences-request', u'Blast4-get-seq-parts-request', u'Blast4-get-protocol-info-request', u'Blast4-get-search-info-request', u'Blast4-reply', u'Blast4-reply-body', u'Blast4-finish-params-reply', u'Blast4-get-windowmasked-taxids-reply', u'Blast4-get-databases-reply', u'Blast4-get-databases-ex-reply', u'Blast4-get-matrices-reply', u'Blast4-get-parameters-reply', u'Blast4-get-paramsets-reply', u'Blast4-get-programs-reply', u'Blast4-get-search-results-reply', u'Blast4-get-sequences-reply', u'Blast4-seq-part-data', u'Blast4-get-seq-parts-reply', u'Blast4-queue-search-reply', u'Blast4-get-queries-reply', u'Blast4-get-protocol-info-reply', u'Blast4-get-search-info-reply', u'Blast4-error', u'Blast4-error-flags', u'Blast4-error-code', u'Blast4-cutoff', u'Blast4-database', u'Blast4-seqtech', u'Blast4-database-info', u'Blast4-frame-type', u'Blast4-ka-block', u'Blast4-mask', u'Blast4-matrix-id', u'Blast4-parameter', u'Blast4-parameter-info', u'Blast4-task-info', u'Blast4-program-info', u'Blast4-residue-type', u'Blast4-strand-type', u'Blast4-subject', u'Blast4-parameters', u'Blast4-phi-alignments', u'Blast4-value', u'Blast4-simple-results', u'Blast4-alignments-for-query', u'Blast4-simple-alignment', u'Blast4-range', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< BigInt >-----# BigInt = INT(name=u'BigInt', mode=MODE_TYPE, tag=(2, TAG_APPLICATION, TAG_IMPLICIT)) #-----< Blast4-request >-----# Blast4_request = SEQ(name=u'Blast4-request', mode=MODE_TYPE) _Blast4_request_ident = STR_VIS(name=u'ident', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_request_body = CHOICE(name=u'body', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-request-body'))) Blast4_request._cont = ASN1Dict([ (u'ident', _Blast4_request_ident), (u'body', _Blast4_request_body), ]) Blast4_request._ext = None #-----< Blast4-archive >-----# Blast4_archive = SEQ(name=u'Blast4-archive', mode=MODE_TYPE) _Blast4_archive_request = SEQ(name=u'request', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-request'))) _Blast4_archive_results = SEQ(name=u'results', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-search-results-reply'))) _Blast4_archive_messages = SEQ_OF(name=u'messages', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast4_archive_messages__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-error'))) _Blast4_archive_messages._cont = __Blast4_archive_messages__item_ Blast4_archive._cont = ASN1Dict([ (u'request', _Blast4_archive_request), (u'results', _Blast4_archive_results), (u'messages', _Blast4_archive_messages), ]) Blast4_archive._ext = None #-----< Blast4-request-body >-----# Blast4_request_body = CHOICE(name=u'Blast4-request-body', mode=MODE_TYPE) _Blast4_request_body_finish_params = SEQ(name=u'finish-params', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-finish-params-request'))) _Blast4_request_body_get_databases = NULL(name=u'get-databases', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_request_body_get_matrices = NULL(name=u'get-matrices', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_request_body_get_parameters = NULL(name=u'get-parameters', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_request_body_get_paramsets = NULL(name=u'get-paramsets', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_request_body_get_programs = NULL(name=u'get-programs', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_request_body_get_search_results = SEQ(name=u'get-search-results', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-search-results-request'))) _Blast4_request_body_get_sequences = SEQ(name=u'get-sequences', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-sequences-request'))) _Blast4_request_body_queue_search = SEQ(name=u'queue-search', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-queue-search-request'))) _Blast4_request_body_get_request_info = SEQ(name=u'get-request-info', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-request-info-request'))) _Blast4_request_body_get_sequence_parts = SEQ(name=u'get-sequence-parts', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-seq-parts-request'))) _Blast4_request_body_get_windowmasked_taxids = NULL(name=u'get-windowmasked-taxids', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_request_body_get_protocol_info = SEQ_OF(name=u'get-protocol-info', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-protocol-info-request'))) _Blast4_request_body_get_search_info = SEQ(name=u'get-search-info', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-search-info-request'))) _Blast4_request_body_get_databases_ex = SEQ(name=u'get-databases-ex', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-databases-ex-request'))) Blast4_request_body._cont = ASN1Dict([ (u'finish-params', _Blast4_request_body_finish_params), (u'get-databases', _Blast4_request_body_get_databases), (u'get-matrices', _Blast4_request_body_get_matrices), (u'get-parameters', _Blast4_request_body_get_parameters), (u'get-paramsets', _Blast4_request_body_get_paramsets), (u'get-programs', _Blast4_request_body_get_programs), (u'get-search-results', _Blast4_request_body_get_search_results), (u'get-sequences', _Blast4_request_body_get_sequences), (u'queue-search', _Blast4_request_body_queue_search), (u'get-request-info', _Blast4_request_body_get_request_info), (u'get-sequence-parts', _Blast4_request_body_get_sequence_parts), (u'get-windowmasked-taxids', _Blast4_request_body_get_windowmasked_taxids), (u'get-protocol-info', _Blast4_request_body_get_protocol_info), (u'get-search-info', _Blast4_request_body_get_search_info), (u'get-databases-ex', _Blast4_request_body_get_databases_ex), ]) Blast4_request_body._ext = None #-----< Blast4-get-databases-ex-request >-----# Blast4_get_databases_ex_request = SEQ(name=u'Blast4-get-databases-ex-request', mode=MODE_TYPE) _Blast4_get_databases_ex_request_params = SEQ_OF(name=u'params', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) Blast4_get_databases_ex_request._cont = ASN1Dict([ (u'params', _Blast4_get_databases_ex_request_params), ]) Blast4_get_databases_ex_request._ext = None #-----< Blast4-finish-params-request >-----# Blast4_finish_params_request = SEQ(name=u'Blast4-finish-params-request', mode=MODE_TYPE) _Blast4_finish_params_request_program = STR_VIS(name=u'program', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_finish_params_request_service = STR_VIS(name=u'service', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_finish_params_request_paramset = STR_VIS(name=u'paramset', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_finish_params_request_params = SEQ_OF(name=u'params', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) Blast4_finish_params_request._cont = ASN1Dict([ (u'program', _Blast4_finish_params_request_program), (u'service', _Blast4_finish_params_request_service), (u'paramset', _Blast4_finish_params_request_paramset), (u'params', _Blast4_finish_params_request_params), ]) Blast4_finish_params_request._ext = None #-----< Blast4-result-types >-----# Blast4_result_types = ENUM(name=u'Blast4-result-types', mode=MODE_TYPE) Blast4_result_types._cont = ASN1Dict([(u'alignments', 1), (u'phi-alignments', 2), (u'masks', 4), (u'ka-blocks', 8), (u'search-stats', 16), (u'pssm', 32), (u'default', 63), (u'simple-results', 64)]) Blast4_result_types._ext = None #-----< Blast4-get-search-results-request >-----# Blast4_get_search_results_request = SEQ(name=u'Blast4-get-search-results-request', mode=MODE_TYPE) _Blast4_get_search_results_request_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_get_search_results_request_result_types = INT(name=u'result-types', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Blast4_get_search_results_request._cont = ASN1Dict([ (u'request-id', _Blast4_get_search_results_request_request_id), (u'result-types', _Blast4_get_search_results_request_result_types), ]) Blast4_get_search_results_request._ext = None #-----< Blast4-queries >-----# Blast4_queries = CHOICE(name=u'Blast4-queries', mode=MODE_TYPE) _Blast4_queries_pssm = SEQ(name=u'pssm', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmWithParameters'))) _Blast4_queries_seq_loc_list = SEQ_OF(name=u'seq-loc-list', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_queries_seq_loc_list__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast4_queries_seq_loc_list._cont = __Blast4_queries_seq_loc_list__item_ _Blast4_queries_bioseq_set = SEQ(name=u'bioseq-set', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Bioseq-set'))) Blast4_queries._cont = ASN1Dict([ (u'pssm', _Blast4_queries_pssm), (u'seq-loc-list', _Blast4_queries_seq_loc_list), (u'bioseq-set', _Blast4_queries_bioseq_set), ]) Blast4_queries._ext = None #-----< Blast4-queue-search-request >-----# Blast4_queue_search_request = SEQ(name=u'Blast4-queue-search-request', mode=MODE_TYPE) _Blast4_queue_search_request_program = STR_VIS(name=u'program', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_queue_search_request_service = STR_VIS(name=u'service', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_queue_search_request_queries = CHOICE(name=u'queries', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-queries'))) _Blast4_queue_search_request_subject = CHOICE(name=u'subject', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-subject'))) _Blast4_queue_search_request_paramset = STR_VIS(name=u'paramset', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_queue_search_request_algorithm_options = SEQ_OF(name=u'algorithm-options', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) _Blast4_queue_search_request_program_options = SEQ_OF(name=u'program-options', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) _Blast4_queue_search_request_format_options = SEQ_OF(name=u'format-options', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) Blast4_queue_search_request._cont = ASN1Dict([ (u'program', _Blast4_queue_search_request_program), (u'service', _Blast4_queue_search_request_service), (u'queries', _Blast4_queue_search_request_queries), (u'subject', _Blast4_queue_search_request_subject), (u'paramset', _Blast4_queue_search_request_paramset), (u'algorithm-options', _Blast4_queue_search_request_algorithm_options), (u'program-options', _Blast4_queue_search_request_program_options), (u'format-options', _Blast4_queue_search_request_format_options), ]) Blast4_queue_search_request._ext = None #-----< Blast4-get-search-status-request >-----# Blast4_get_search_status_request = SEQ(name=u'Blast4-get-search-status-request', mode=MODE_TYPE) _Blast4_get_search_status_request_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_get_search_status_request._cont = ASN1Dict([ (u'request-id', _Blast4_get_search_status_request_request_id), ]) Blast4_get_search_status_request._ext = None #-----< Blast4-get-search-status-reply >-----# Blast4_get_search_status_reply = SEQ(name=u'Blast4-get-search-status-reply', mode=MODE_TYPE) _Blast4_get_search_status_reply_status = STR_VIS(name=u'status', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_get_search_status_reply._cont = ASN1Dict([ (u'status', _Blast4_get_search_status_reply_status), ]) Blast4_get_search_status_reply._ext = None #-----< Blast4-get-request-info-request >-----# Blast4_get_request_info_request = SEQ(name=u'Blast4-get-request-info-request', mode=MODE_TYPE) _Blast4_get_request_info_request_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_get_request_info_request._cont = ASN1Dict([ (u'request-id', _Blast4_get_request_info_request_request_id), ]) Blast4_get_request_info_request._ext = None #-----< Blast4-get-request-info-reply >-----# Blast4_get_request_info_reply = SEQ(name=u'Blast4-get-request-info-reply', mode=MODE_TYPE) _Blast4_get_request_info_reply_database = SEQ(name=u'database', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-database'))) _Blast4_get_request_info_reply_program = STR_VIS(name=u'program', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_get_request_info_reply_service = STR_VIS(name=u'service', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_get_request_info_reply_created_by = STR_VIS(name=u'created-by', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_get_request_info_reply_queries = CHOICE(name=u'queries', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-queries'))) _Blast4_get_request_info_reply_algorithm_options = SEQ_OF(name=u'algorithm-options', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters'))) _Blast4_get_request_info_reply_program_options = SEQ_OF(name=u'program-options', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters'))) _Blast4_get_request_info_reply_format_options = SEQ_OF(name=u'format-options', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) _Blast4_get_request_info_reply_subjects = CHOICE(name=u'subjects', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-subject')), opt=True) Blast4_get_request_info_reply._cont = ASN1Dict([ (u'database', _Blast4_get_request_info_reply_database), (u'program', _Blast4_get_request_info_reply_program), (u'service', _Blast4_get_request_info_reply_service), (u'created-by', _Blast4_get_request_info_reply_created_by), (u'queries', _Blast4_get_request_info_reply_queries), (u'algorithm-options', _Blast4_get_request_info_reply_algorithm_options), (u'program-options', _Blast4_get_request_info_reply_program_options), (u'format-options', _Blast4_get_request_info_reply_format_options), (u'subjects', _Blast4_get_request_info_reply_subjects), ]) Blast4_get_request_info_reply._ext = None #-----< Blast4-get-search-strategy-request >-----# Blast4_get_search_strategy_request = SEQ(name=u'Blast4-get-search-strategy-request', mode=MODE_TYPE) _Blast4_get_search_strategy_request_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_get_search_strategy_request._cont = ASN1Dict([ (u'request-id', _Blast4_get_search_strategy_request_request_id), ]) Blast4_get_search_strategy_request._ext = None #-----< Blast4-get-search-strategy-reply >-----# Blast4_get_search_strategy_reply = SEQ(name=u'Blast4-get-search-strategy-reply', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-request'))) #-----< Blast4-get-sequences-request >-----# Blast4_get_sequences_request = SEQ(name=u'Blast4-get-sequences-request', mode=MODE_TYPE) _Blast4_get_sequences_request_database = SEQ(name=u'database', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-database'))) _Blast4_get_sequences_request_seq_ids = SEQ_OF(name=u'seq-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_get_sequences_request_seq_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Blast4_get_sequences_request_seq_ids._cont = __Blast4_get_sequences_request_seq_ids__item_ _Blast4_get_sequences_request_skip_seq_data = BOOL(name=u'skip-seq-data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Blast4_get_sequences_request_target_only = BOOL(name=u'target-only', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Blast4_get_sequences_request._cont = ASN1Dict([ (u'database', _Blast4_get_sequences_request_database), (u'seq-ids', _Blast4_get_sequences_request_seq_ids), (u'skip-seq-data', _Blast4_get_sequences_request_skip_seq_data), (u'target-only', _Blast4_get_sequences_request_target_only), ]) Blast4_get_sequences_request._ext = None #-----< Blast4-get-seq-parts-request >-----# Blast4_get_seq_parts_request = SEQ(name=u'Blast4-get-seq-parts-request', mode=MODE_TYPE) _Blast4_get_seq_parts_request_database = SEQ(name=u'database', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-database'))) _Blast4_get_seq_parts_request_seq_locations = SEQ_OF(name=u'seq-locations', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_get_seq_parts_request_seq_locations__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval'))) _Blast4_get_seq_parts_request_seq_locations._cont = __Blast4_get_seq_parts_request_seq_locations__item_ Blast4_get_seq_parts_request._cont = ASN1Dict([ (u'database', _Blast4_get_seq_parts_request_database), (u'seq-locations', _Blast4_get_seq_parts_request_seq_locations), ]) Blast4_get_seq_parts_request._ext = None #-----< Blast4-get-protocol-info-request >-----# Blast4_get_protocol_info_request = SEQ_OF(name=u'Blast4-get-protocol-info-request', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters'))) #-----< Blast4-get-search-info-request >-----# Blast4_get_search_info_request = SEQ(name=u'Blast4-get-search-info-request', mode=MODE_TYPE) _Blast4_get_search_info_request_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_get_search_info_request_info = SEQ_OF(name=u'info', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) Blast4_get_search_info_request._cont = ASN1Dict([ (u'request-id', _Blast4_get_search_info_request_request_id), (u'info', _Blast4_get_search_info_request_info), ]) Blast4_get_search_info_request._ext = None #-----< Blast4-reply >-----# Blast4_reply = SEQ(name=u'Blast4-reply', mode=MODE_TYPE) _Blast4_reply_errors = SEQ_OF(name=u'errors', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast4_reply_errors__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-error'))) _Blast4_reply_errors._cont = __Blast4_reply_errors__item_ _Blast4_reply_body = CHOICE(name=u'body', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-reply-body'))) Blast4_reply._cont = ASN1Dict([ (u'errors', _Blast4_reply_errors), (u'body', _Blast4_reply_body), ]) Blast4_reply._ext = None #-----< Blast4-reply-body >-----# Blast4_reply_body = CHOICE(name=u'Blast4-reply-body', mode=MODE_TYPE) _Blast4_reply_body_finish_params = SEQ_OF(name=u'finish-params', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-finish-params-reply'))) _Blast4_reply_body_get_databases = SEQ_OF(name=u'get-databases', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-databases-reply'))) _Blast4_reply_body_get_matrices = SEQ_OF(name=u'get-matrices', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-matrices-reply'))) _Blast4_reply_body_get_parameters = SEQ_OF(name=u'get-parameters', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-parameters-reply'))) _Blast4_reply_body_get_paramsets = SEQ_OF(name=u'get-paramsets', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-paramsets-reply'))) _Blast4_reply_body_get_programs = SEQ_OF(name=u'get-programs', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-programs-reply'))) _Blast4_reply_body_get_search_results = SEQ(name=u'get-search-results', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-search-results-reply'))) _Blast4_reply_body_get_sequences = SEQ_OF(name=u'get-sequences', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-sequences-reply'))) _Blast4_reply_body_queue_search = SEQ(name=u'queue-search', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-queue-search-reply'))) _Blast4_reply_body_get_queries = SEQ(name=u'get-queries', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-queries-reply'))) _Blast4_reply_body_get_request_info = SEQ(name=u'get-request-info', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-request-info-reply'))) _Blast4_reply_body_get_sequence_parts = SEQ_OF(name=u'get-sequence-parts', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-seq-parts-reply'))) _Blast4_reply_body_get_windowmasked_taxids = SEQ_OF(name=u'get-windowmasked-taxids', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-windowmasked-taxids-reply'))) _Blast4_reply_body_get_protocol_info = SEQ_OF(name=u'get-protocol-info', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-protocol-info-reply'))) _Blast4_reply_body_get_search_info = SEQ(name=u'get-search-info', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-search-info-reply'))) _Blast4_reply_body_get_databases_ex = SEQ_OF(name=u'get-databases-ex', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-get-databases-ex-reply'))) Blast4_reply_body._cont = ASN1Dict([ (u'finish-params', _Blast4_reply_body_finish_params), (u'get-databases', _Blast4_reply_body_get_databases), (u'get-matrices', _Blast4_reply_body_get_matrices), (u'get-parameters', _Blast4_reply_body_get_parameters), (u'get-paramsets', _Blast4_reply_body_get_paramsets), (u'get-programs', _Blast4_reply_body_get_programs), (u'get-search-results', _Blast4_reply_body_get_search_results), (u'get-sequences', _Blast4_reply_body_get_sequences), (u'queue-search', _Blast4_reply_body_queue_search), (u'get-queries', _Blast4_reply_body_get_queries), (u'get-request-info', _Blast4_reply_body_get_request_info), (u'get-sequence-parts', _Blast4_reply_body_get_sequence_parts), (u'get-windowmasked-taxids', _Blast4_reply_body_get_windowmasked_taxids), (u'get-protocol-info', _Blast4_reply_body_get_protocol_info), (u'get-search-info', _Blast4_reply_body_get_search_info), (u'get-databases-ex', _Blast4_reply_body_get_databases_ex), ]) Blast4_reply_body._ext = None #-----< Blast4-finish-params-reply >-----# Blast4_finish_params_reply = SEQ_OF(name=u'Blast4-finish-params-reply', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters'))) #-----< Blast4-get-windowmasked-taxids-reply >-----# Blast4_get_windowmasked_taxids_reply = SEQ_OF(name=u'Blast4-get-windowmasked-taxids-reply', mode=MODE_TYPE) _Blast4_get_windowmasked_taxids_reply__item_ = INT(name='_item_', mode=MODE_TYPE) Blast4_get_windowmasked_taxids_reply._cont = _Blast4_get_windowmasked_taxids_reply__item_ #-----< Blast4-get-databases-reply >-----# Blast4_get_databases_reply = SEQ_OF(name=u'Blast4-get-databases-reply', mode=MODE_TYPE) _Blast4_get_databases_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-database-info'))) Blast4_get_databases_reply._cont = _Blast4_get_databases_reply__item_ #-----< Blast4-get-databases-ex-reply >-----# Blast4_get_databases_ex_reply = SEQ_OF(name=u'Blast4-get-databases-ex-reply', mode=MODE_TYPE) _Blast4_get_databases_ex_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-database-info'))) Blast4_get_databases_ex_reply._cont = _Blast4_get_databases_ex_reply__item_ #-----< Blast4-get-matrices-reply >-----# Blast4_get_matrices_reply = SEQ_OF(name=u'Blast4-get-matrices-reply', mode=MODE_TYPE) _Blast4_get_matrices_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-matrix-id'))) Blast4_get_matrices_reply._cont = _Blast4_get_matrices_reply__item_ #-----< Blast4-get-parameters-reply >-----# Blast4_get_parameters_reply = SEQ_OF(name=u'Blast4-get-parameters-reply', mode=MODE_TYPE) _Blast4_get_parameters_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameter-info'))) Blast4_get_parameters_reply._cont = _Blast4_get_parameters_reply__item_ #-----< Blast4-get-paramsets-reply >-----# Blast4_get_paramsets_reply = SEQ_OF(name=u'Blast4-get-paramsets-reply', mode=MODE_TYPE) _Blast4_get_paramsets_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-task-info'))) Blast4_get_paramsets_reply._cont = _Blast4_get_paramsets_reply__item_ #-----< Blast4-get-programs-reply >-----# Blast4_get_programs_reply = SEQ_OF(name=u'Blast4-get-programs-reply', mode=MODE_TYPE) _Blast4_get_programs_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-program-info'))) Blast4_get_programs_reply._cont = _Blast4_get_programs_reply__item_ #-----< Blast4-get-search-results-reply >-----# Blast4_get_search_results_reply = SEQ(name=u'Blast4-get-search-results-reply', mode=MODE_TYPE) _Blast4_get_search_results_reply_alignments = SET_OF(name=u'alignments', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align-set')), opt=True) _Blast4_get_search_results_reply_phi_alignments = SEQ(name=u'phi-alignments', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-phi-alignments')), opt=True) _Blast4_get_search_results_reply_masks = SEQ_OF(name=u'masks', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast4_get_search_results_reply_masks__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-mask'))) _Blast4_get_search_results_reply_masks._cont = __Blast4_get_search_results_reply_masks__item_ _Blast4_get_search_results_reply_ka_blocks = SEQ_OF(name=u'ka-blocks', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast4_get_search_results_reply_ka_blocks__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-ka-block'))) _Blast4_get_search_results_reply_ka_blocks._cont = __Blast4_get_search_results_reply_ka_blocks__item_ _Blast4_get_search_results_reply_search_stats = SEQ_OF(name=u'search-stats', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast4_get_search_results_reply_search_stats__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Blast4_get_search_results_reply_search_stats._cont = __Blast4_get_search_results_reply_search_stats__item_ _Blast4_get_search_results_reply_pssm = SEQ(name=u'pssm', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmWithParameters')), opt=True) _Blast4_get_search_results_reply_simple_results = SEQ(name=u'simple-results', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-simple-results')), opt=True) Blast4_get_search_results_reply._cont = ASN1Dict([ (u'alignments', _Blast4_get_search_results_reply_alignments), (u'phi-alignments', _Blast4_get_search_results_reply_phi_alignments), (u'masks', _Blast4_get_search_results_reply_masks), (u'ka-blocks', _Blast4_get_search_results_reply_ka_blocks), (u'search-stats', _Blast4_get_search_results_reply_search_stats), (u'pssm', _Blast4_get_search_results_reply_pssm), (u'simple-results', _Blast4_get_search_results_reply_simple_results), ]) Blast4_get_search_results_reply._ext = None #-----< Blast4-get-sequences-reply >-----# Blast4_get_sequences_reply = SEQ_OF(name=u'Blast4-get-sequences-reply', mode=MODE_TYPE) _Blast4_get_sequences_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) Blast4_get_sequences_reply._cont = _Blast4_get_sequences_reply__item_ #-----< Blast4-seq-part-data >-----# Blast4_seq_part_data = SEQ(name=u'Blast4-seq-part-data', mode=MODE_TYPE) _Blast4_seq_part_data_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Blast4_seq_part_data_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-data'))) Blast4_seq_part_data._cont = ASN1Dict([ (u'id', _Blast4_seq_part_data_id), (u'data', _Blast4_seq_part_data_data), ]) Blast4_seq_part_data._ext = None #-----< Blast4-get-seq-parts-reply >-----# Blast4_get_seq_parts_reply = SEQ_OF(name=u'Blast4-get-seq-parts-reply', mode=MODE_TYPE) _Blast4_get_seq_parts_reply__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-seq-part-data'))) Blast4_get_seq_parts_reply._cont = _Blast4_get_seq_parts_reply__item_ #-----< Blast4-queue-search-reply >-----# Blast4_queue_search_reply = SEQ(name=u'Blast4-queue-search-reply', mode=MODE_TYPE) _Blast4_queue_search_reply_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Blast4_queue_search_reply._cont = ASN1Dict([ (u'request-id', _Blast4_queue_search_reply_request_id), ]) Blast4_queue_search_reply._ext = None #-----< Blast4-get-queries-reply >-----# Blast4_get_queries_reply = SEQ(name=u'Blast4-get-queries-reply', mode=MODE_TYPE) _Blast4_get_queries_reply_queries = CHOICE(name=u'queries', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-queries'))) Blast4_get_queries_reply._cont = ASN1Dict([ (u'queries', _Blast4_get_queries_reply_queries), ]) Blast4_get_queries_reply._ext = None #-----< Blast4-get-protocol-info-reply >-----# Blast4_get_protocol_info_reply = SEQ_OF(name=u'Blast4-get-protocol-info-reply', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters'))) #-----< Blast4-get-search-info-reply >-----# Blast4_get_search_info_reply = SEQ(name=u'Blast4-get-search-info-reply', mode=MODE_TYPE) _Blast4_get_search_info_reply_request_id = STR_VIS(name=u'request-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_get_search_info_reply_info = SEQ_OF(name=u'info', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) Blast4_get_search_info_reply._cont = ASN1Dict([ (u'request-id', _Blast4_get_search_info_reply_request_id), (u'info', _Blast4_get_search_info_reply_info), ]) Blast4_get_search_info_reply._ext = None #-----< Blast4-error >-----# Blast4_error = SEQ(name=u'Blast4-error', mode=MODE_TYPE) _Blast4_error_code = INT(name=u'code', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_error_message = STR_VIS(name=u'message', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Blast4_error._cont = ASN1Dict([ (u'code', _Blast4_error_code), (u'message', _Blast4_error_message), ]) Blast4_error._ext = None #-----< Blast4-error-flags >-----# Blast4_error_flags = ENUM(name=u'Blast4-error-flags', mode=MODE_TYPE) Blast4_error_flags._cont = ASN1Dict([(u'warning', 1024), (u'error', 2048)]) Blast4_error_flags._ext = None #-----< Blast4-error-code >-----# Blast4_error_code = INT(name=u'Blast4-error-code', mode=MODE_TYPE) Blast4_error_code._cont = ASN1Dict([(u'conversion-warning', 1024), (u'internal-error', 2048), (u'not-implemented', 2049), (u'not-allowed', 2050), (u'bad-request', 2051), (u'bad-request-id', 2052), (u'search-pending', 2053)]) #-----< Blast4-cutoff >-----# Blast4_cutoff = CHOICE(name=u'Blast4-cutoff', mode=MODE_TYPE) _Blast4_cutoff_e_value = REAL(name=u'e-value', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_cutoff_raw_score = INT(name=u'raw-score', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_cutoff._cont = ASN1Dict([ (u'e-value', _Blast4_cutoff_e_value), (u'raw-score', _Blast4_cutoff_raw_score), ]) Blast4_cutoff._ext = None #-----< Blast4-database >-----# Blast4_database = SEQ(name=u'Blast4-database', mode=MODE_TYPE) _Blast4_database_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_database_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-residue-type'))) Blast4_database._cont = ASN1Dict([ (u'name', _Blast4_database_name), (u'type', _Blast4_database_type), ]) Blast4_database._ext = None #-----< Blast4-seqtech >-----# Blast4_seqtech = INT(name=u'Blast4-seqtech', mode=MODE_TYPE) Blast4_seqtech._cont = ASN1Dict([(u'unknown', 0), (u'standard', 1), (u'est', 2), (u'sts', 3), (u'survey', 4), (u'genemap', 5), (u'physmap', 6), (u'derived', 7), (u'concept-trans', 8), (u'seq-pept', 9), (u'both', 10), (u'seq-pept-overlap', 11), (u'seq-pept-homol', 12), (u'concept-trans-a', 13), (u'htgs-1', 14), (u'htgs-2', 15), (u'htgs-3', 16), (u'fli-cdna', 17), (u'htgs-0', 18), (u'htc', 19), (u'wgs', 20), (u'other', 255)]) #-----< Blast4-database-info >-----# Blast4_database_info = SEQ(name=u'Blast4-database-info', mode=MODE_TYPE) _Blast4_database_info_database = SEQ(name=u'database', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-database'))) _Blast4_database_info_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_database_info_last_updated = STR_VIS(name=u'last-updated', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_database_info_total_length = INT(name=u'total-length', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'BigInt'))) _Blast4_database_info_num_sequences = INT(name=u'num-sequences', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'BigInt'))) _Blast4_database_info_seqtech = INT(name=u'seqtech', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-seqtech'))) _Blast4_database_info_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_database_info_extended = SEQ_OF(name=u'extended', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameters')), opt=True) Blast4_database_info._cont = ASN1Dict([ (u'database', _Blast4_database_info_database), (u'description', _Blast4_database_info_description), (u'last-updated', _Blast4_database_info_last_updated), (u'total-length', _Blast4_database_info_total_length), (u'num-sequences', _Blast4_database_info_num_sequences), (u'seqtech', _Blast4_database_info_seqtech), (u'taxid', _Blast4_database_info_taxid), (u'extended', _Blast4_database_info_extended), ]) Blast4_database_info._ext = None #-----< Blast4-frame-type >-----# Blast4_frame_type = ENUM(name=u'Blast4-frame-type', mode=MODE_TYPE) Blast4_frame_type._cont = ASN1Dict([(u'notset', 0), (u'plus1', 1), (u'plus2', 2), (u'plus3', 3), (u'minus1', 4), (u'minus2', 5), (u'minus3', 6)]) Blast4_frame_type._ext = None #-----< Blast4-ka-block >-----# Blast4_ka_block = SEQ(name=u'Blast4-ka-block', mode=MODE_TYPE) _Blast4_ka_block_lambda_ = REAL(name=u'lambda', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_ka_block_k = REAL(name=u'k', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_ka_block_h = REAL(name=u'h', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_ka_block_gapped = BOOL(name=u'gapped', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_ka_block._cont = ASN1Dict([ (u'lambda', _Blast4_ka_block_lambda_), (u'k', _Blast4_ka_block_k), (u'h', _Blast4_ka_block_h), (u'gapped', _Blast4_ka_block_gapped), ]) Blast4_ka_block._ext = None #-----< Blast4-mask >-----# Blast4_mask = SEQ(name=u'Blast4-mask', mode=MODE_TYPE) _Blast4_mask_locations = SEQ_OF(name=u'locations', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_mask_locations__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast4_mask_locations._cont = __Blast4_mask_locations__item_ _Blast4_mask_frame = ENUM(name=u'frame', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-frame-type'))) Blast4_mask._cont = ASN1Dict([ (u'locations', _Blast4_mask_locations), (u'frame', _Blast4_mask_frame), ]) Blast4_mask._ext = None #-----< Blast4-matrix-id >-----# Blast4_matrix_id = SEQ(name=u'Blast4-matrix-id', mode=MODE_TYPE) _Blast4_matrix_id_residue_type = ENUM(name=u'residue-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-residue-type'))) _Blast4_matrix_id_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_matrix_id._cont = ASN1Dict([ (u'residue-type', _Blast4_matrix_id_residue_type), (u'name', _Blast4_matrix_id_name), ]) Blast4_matrix_id._ext = None #-----< Blast4-parameter >-----# Blast4_parameter = SEQ(name=u'Blast4-parameter', mode=MODE_TYPE) _Blast4_parameter_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_parameter_value = CHOICE(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-value'))) Blast4_parameter._cont = ASN1Dict([ (u'name', _Blast4_parameter_name), (u'value', _Blast4_parameter_value), ]) Blast4_parameter._ext = None #-----< Blast4-parameter-info >-----# Blast4_parameter_info = SEQ(name=u'Blast4-parameter-info', mode=MODE_TYPE) _Blast4_parameter_info_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_parameter_info_type = STR_VIS(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_parameter_info._cont = ASN1Dict([ (u'name', _Blast4_parameter_info_name), (u'type', _Blast4_parameter_info_type), ]) Blast4_parameter_info._ext = None #-----< Blast4-task-info >-----# Blast4_task_info = SEQ(name=u'Blast4-task-info', mode=MODE_TYPE) _Blast4_task_info_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_task_info_documentation = STR_VIS(name=u'documentation', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast4_task_info._cont = ASN1Dict([ (u'name', _Blast4_task_info_name), (u'documentation', _Blast4_task_info_documentation), ]) Blast4_task_info._ext = None #-----< Blast4-program-info >-----# Blast4_program_info = SEQ(name=u'Blast4-program-info', mode=MODE_TYPE) _Blast4_program_info_program = STR_VIS(name=u'program', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_program_info_services = SEQ_OF(name=u'services', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_program_info_services__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Blast4_program_info_services._cont = __Blast4_program_info_services__item_ Blast4_program_info._cont = ASN1Dict([ (u'program', _Blast4_program_info_program), (u'services', _Blast4_program_info_services), ]) Blast4_program_info._ext = None #-----< Blast4-residue-type >-----# Blast4_residue_type = ENUM(name=u'Blast4-residue-type', mode=MODE_TYPE) Blast4_residue_type._cont = ASN1Dict([(u'unknown', 0), (u'protein', 1), (u'nucleotide', 2)]) Blast4_residue_type._ext = None #-----< Blast4-strand-type >-----# Blast4_strand_type = ENUM(name=u'Blast4-strand-type', mode=MODE_TYPE) Blast4_strand_type._cont = ASN1Dict([(u'forward-strand', 1), (u'reverse-strand', 2), (u'both-strands', 3)]) Blast4_strand_type._ext = None #-----< Blast4-subject >-----# Blast4_subject = CHOICE(name=u'Blast4-subject', mode=MODE_TYPE) _Blast4_subject_database = STR_VIS(name=u'database', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_subject_sequences = SEQ_OF(name=u'sequences', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_subject_sequences__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) _Blast4_subject_sequences._cont = __Blast4_subject_sequences__item_ _Blast4_subject_seq_loc_list = SEQ_OF(name=u'seq-loc-list', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_subject_seq_loc_list__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast4_subject_seq_loc_list._cont = __Blast4_subject_seq_loc_list__item_ Blast4_subject._cont = ASN1Dict([ (u'database', _Blast4_subject_database), (u'sequences', _Blast4_subject_sequences), (u'seq-loc-list', _Blast4_subject_seq_loc_list), ]) Blast4_subject._ext = None #-----< Blast4-parameters >-----# Blast4_parameters = SEQ_OF(name=u'Blast4-parameters', mode=MODE_TYPE) _Blast4_parameters__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-parameter'))) Blast4_parameters._cont = _Blast4_parameters__item_ #-----< Blast4-phi-alignments >-----# Blast4_phi_alignments = SEQ(name=u'Blast4-phi-alignments', mode=MODE_TYPE) _Blast4_phi_alignments_num_alignments = INT(name=u'num-alignments', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_phi_alignments_seq_locs = SEQ_OF(name=u'seq-locs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_phi_alignments_seq_locs__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast4_phi_alignments_seq_locs._cont = __Blast4_phi_alignments_seq_locs__item_ Blast4_phi_alignments._cont = ASN1Dict([ (u'num-alignments', _Blast4_phi_alignments_num_alignments), (u'seq-locs', _Blast4_phi_alignments_seq_locs), ]) Blast4_phi_alignments._ext = None #-----< Blast4-value >-----# Blast4_value = CHOICE(name=u'Blast4-value', mode=MODE_TYPE) _Blast4_value_big_integer = INT(name=u'big-integer', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'BigInt'))) _Blast4_value_bioseq = SEQ(name=u'bioseq', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) _Blast4_value_boolean = BOOL(name=u'boolean', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_value_cutoff = CHOICE(name=u'cutoff', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-cutoff'))) _Blast4_value_integer = INT(name=u'integer', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_value_matrix = SEQ(name=u'matrix', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmWithParameters'))) _Blast4_value_real = REAL(name=u'real', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_value_seq_align = SEQ(name=u'seq-align', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) _Blast4_value_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Blast4_value_seq_loc = CHOICE(name=u'seq-loc', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast4_value_strand_type = ENUM(name=u'strand-type', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-strand-type'))) _Blast4_value_string = STR_VIS(name=u'string', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_value_big_integer_list = SEQ_OF(name=u'big-integer-list', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_big_integer_list__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'BigInt'))) _Blast4_value_big_integer_list._cont = __Blast4_value_big_integer_list__item_ _Blast4_value_bioseq_list = SEQ_OF(name=u'bioseq-list', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_bioseq_list__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) _Blast4_value_bioseq_list._cont = __Blast4_value_bioseq_list__item_ _Blast4_value_boolean_list = SEQ_OF(name=u'boolean-list', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_boolean_list__item_ = BOOL(name='_item_', mode=MODE_TYPE) _Blast4_value_boolean_list._cont = __Blast4_value_boolean_list__item_ _Blast4_value_cutoff_list = SEQ_OF(name=u'cutoff-list', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_cutoff_list__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-cutoff'))) _Blast4_value_cutoff_list._cont = __Blast4_value_cutoff_list__item_ _Blast4_value_integer_list = SEQ_OF(name=u'integer-list', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_integer_list__item_ = INT(name='_item_', mode=MODE_TYPE) _Blast4_value_integer_list._cont = __Blast4_value_integer_list__item_ _Blast4_value_matrix_list = SEQ_OF(name=u'matrix-list', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_matrix_list__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmWithParameters'))) _Blast4_value_matrix_list._cont = __Blast4_value_matrix_list__item_ _Blast4_value_real_list = SEQ_OF(name=u'real-list', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_real_list__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_value_real_list._cont = __Blast4_value_real_list__item_ _Blast4_value_seq_align_list = SEQ_OF(name=u'seq-align-list', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_seq_align_list__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) _Blast4_value_seq_align_list._cont = __Blast4_value_seq_align_list__item_ _Blast4_value_seq_id_list = SEQ_OF(name=u'seq-id-list', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_seq_id_list__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Blast4_value_seq_id_list._cont = __Blast4_value_seq_id_list__item_ _Blast4_value_seq_loc_list = SEQ_OF(name=u'seq-loc-list', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_seq_loc_list__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast4_value_seq_loc_list._cont = __Blast4_value_seq_loc_list__item_ _Blast4_value_strand_type_list = SEQ_OF(name=u'strand-type-list', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_strand_type_list__item_ = ENUM(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-strand-type'))) _Blast4_value_strand_type_list._cont = __Blast4_value_strand_type_list__item_ _Blast4_value_string_list = SEQ_OF(name=u'string-list', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_value_string_list__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Blast4_value_string_list._cont = __Blast4_value_string_list__item_ _Blast4_value_bioseq_set = SEQ(name=u'bioseq-set', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Bioseq-set'))) _Blast4_value_seq_align_set = SET_OF(name=u'seq-align-set', mode=MODE_TYPE, tag=(25, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align-set'))) _Blast4_value_query_mask = SEQ(name=u'query-mask', mode=MODE_TYPE, tag=(26, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-mask'))) Blast4_value._cont = ASN1Dict([ (u'big-integer', _Blast4_value_big_integer), (u'bioseq', _Blast4_value_bioseq), (u'boolean', _Blast4_value_boolean), (u'cutoff', _Blast4_value_cutoff), (u'integer', _Blast4_value_integer), (u'matrix', _Blast4_value_matrix), (u'real', _Blast4_value_real), (u'seq-align', _Blast4_value_seq_align), (u'seq-id', _Blast4_value_seq_id), (u'seq-loc', _Blast4_value_seq_loc), (u'strand-type', _Blast4_value_strand_type), (u'string', _Blast4_value_string), (u'big-integer-list', _Blast4_value_big_integer_list), (u'bioseq-list', _Blast4_value_bioseq_list), (u'boolean-list', _Blast4_value_boolean_list), (u'cutoff-list', _Blast4_value_cutoff_list), (u'integer-list', _Blast4_value_integer_list), (u'matrix-list', _Blast4_value_matrix_list), (u'real-list', _Blast4_value_real_list), (u'seq-align-list', _Blast4_value_seq_align_list), (u'seq-id-list', _Blast4_value_seq_id_list), (u'seq-loc-list', _Blast4_value_seq_loc_list), (u'strand-type-list', _Blast4_value_strand_type_list), (u'string-list', _Blast4_value_string_list), (u'bioseq-set', _Blast4_value_bioseq_set), (u'seq-align-set', _Blast4_value_seq_align_set), (u'query-mask', _Blast4_value_query_mask), ]) Blast4_value._ext = None #-----< Blast4-simple-results >-----# Blast4_simple_results = SEQ(name=u'Blast4-simple-results', mode=MODE_TYPE) _Blast4_simple_results_all_alignments = SEQ_OF(name=u'all-alignments', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_simple_results_all_alignments__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-alignments-for-query'))) _Blast4_simple_results_all_alignments._cont = __Blast4_simple_results_all_alignments__item_ Blast4_simple_results._cont = ASN1Dict([ (u'all-alignments', _Blast4_simple_results_all_alignments), ]) Blast4_simple_results._ext = None #-----< Blast4-alignments-for-query >-----# Blast4_alignments_for_query = SEQ(name=u'Blast4-alignments-for-query', mode=MODE_TYPE) _Blast4_alignments_for_query_query_id = STR_VIS(name=u'query-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_alignments_for_query_alignments = SEQ_OF(name=u'alignments', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast4_alignments_for_query_alignments__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-simple-alignment'))) _Blast4_alignments_for_query_alignments._cont = __Blast4_alignments_for_query_alignments__item_ Blast4_alignments_for_query._cont = ASN1Dict([ (u'query-id', _Blast4_alignments_for_query_query_id), (u'alignments', _Blast4_alignments_for_query_alignments), ]) Blast4_alignments_for_query._ext = None #-----< Blast4-simple-alignment >-----# Blast4_simple_alignment = SEQ(name=u'Blast4-simple-alignment', mode=MODE_TYPE) _Blast4_simple_alignment_subject_id = STR_VIS(name=u'subject-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast4_simple_alignment_e_value = REAL(name=u'e-value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_simple_alignment_bit_score = REAL(name=u'bit-score', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Blast4_simple_alignment_num_identities = INT(name=u'num-identities', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_simple_alignment_num_indels = INT(name=u'num-indels', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_simple_alignment_full_query_range = SEQ(name=u'full-query-range', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-range'))) _Blast4_simple_alignment_full_subject_range = SEQ(name=u'full-subject-range', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Blast4', 'Blast4-range'))) Blast4_simple_alignment._cont = ASN1Dict([ (u'subject-id', _Blast4_simple_alignment_subject_id), (u'e-value', _Blast4_simple_alignment_e_value), (u'bit-score', _Blast4_simple_alignment_bit_score), (u'num-identities', _Blast4_simple_alignment_num_identities), (u'num-indels', _Blast4_simple_alignment_num_indels), (u'full-query-range', _Blast4_simple_alignment_full_query_range), (u'full-subject-range', _Blast4_simple_alignment_full_subject_range), ]) Blast4_simple_alignment._ext = None #-----< Blast4-range >-----# Blast4_range = SEQ(name=u'Blast4-range', mode=MODE_TYPE) _Blast4_range_start = INT(name=u'start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_range_end = INT(name=u'end', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast4_range_strand = INT(name=u'strand', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Blast4_range._cont = ASN1Dict([ (u'start', _Blast4_range_start), (u'end', _Blast4_range_end), (u'strand', _Blast4_range_strand), ]) Blast4_range._ext = None _all_ = [ BigInt, _Blast4_request_ident, _Blast4_request_body, Blast4_request, _Blast4_archive_request, _Blast4_archive_results, __Blast4_archive_messages__item_, _Blast4_archive_messages, Blast4_archive, _Blast4_request_body_finish_params, _Blast4_request_body_get_databases, _Blast4_request_body_get_matrices, _Blast4_request_body_get_parameters, _Blast4_request_body_get_paramsets, _Blast4_request_body_get_programs, _Blast4_request_body_get_search_results, _Blast4_request_body_get_sequences, _Blast4_request_body_queue_search, _Blast4_request_body_get_request_info, _Blast4_request_body_get_sequence_parts, _Blast4_request_body_get_windowmasked_taxids, _Blast4_request_body_get_protocol_info, _Blast4_request_body_get_search_info, _Blast4_request_body_get_databases_ex, Blast4_request_body, _Blast4_get_databases_ex_request_params, Blast4_get_databases_ex_request, _Blast4_finish_params_request_program, _Blast4_finish_params_request_service, _Blast4_finish_params_request_paramset, _Blast4_finish_params_request_params, Blast4_finish_params_request, Blast4_result_types, _Blast4_get_search_results_request_request_id, _Blast4_get_search_results_request_result_types, Blast4_get_search_results_request, _Blast4_queries_pssm, __Blast4_queries_seq_loc_list__item_, _Blast4_queries_seq_loc_list, _Blast4_queries_bioseq_set, Blast4_queries, _Blast4_queue_search_request_program, _Blast4_queue_search_request_service, _Blast4_queue_search_request_queries, _Blast4_queue_search_request_subject, _Blast4_queue_search_request_paramset, _Blast4_queue_search_request_algorithm_options, _Blast4_queue_search_request_program_options, _Blast4_queue_search_request_format_options, Blast4_queue_search_request, _Blast4_get_search_status_request_request_id, Blast4_get_search_status_request, _Blast4_get_search_status_reply_status, Blast4_get_search_status_reply, _Blast4_get_request_info_request_request_id, Blast4_get_request_info_request, _Blast4_get_request_info_reply_database, _Blast4_get_request_info_reply_program, _Blast4_get_request_info_reply_service, _Blast4_get_request_info_reply_created_by, _Blast4_get_request_info_reply_queries, _Blast4_get_request_info_reply_algorithm_options, _Blast4_get_request_info_reply_program_options, _Blast4_get_request_info_reply_format_options, _Blast4_get_request_info_reply_subjects, Blast4_get_request_info_reply, _Blast4_get_search_strategy_request_request_id, Blast4_get_search_strategy_request, Blast4_get_search_strategy_reply, _Blast4_get_sequences_request_database, __Blast4_get_sequences_request_seq_ids__item_, _Blast4_get_sequences_request_seq_ids, _Blast4_get_sequences_request_skip_seq_data, _Blast4_get_sequences_request_target_only, Blast4_get_sequences_request, _Blast4_get_seq_parts_request_database, __Blast4_get_seq_parts_request_seq_locations__item_, _Blast4_get_seq_parts_request_seq_locations, Blast4_get_seq_parts_request, Blast4_get_protocol_info_request, _Blast4_get_search_info_request_request_id, _Blast4_get_search_info_request_info, Blast4_get_search_info_request, __Blast4_reply_errors__item_, _Blast4_reply_errors, _Blast4_reply_body, Blast4_reply, _Blast4_reply_body_finish_params, _Blast4_reply_body_get_databases, _Blast4_reply_body_get_matrices, _Blast4_reply_body_get_parameters, _Blast4_reply_body_get_paramsets, _Blast4_reply_body_get_programs, _Blast4_reply_body_get_search_results, _Blast4_reply_body_get_sequences, _Blast4_reply_body_queue_search, _Blast4_reply_body_get_queries, _Blast4_reply_body_get_request_info, _Blast4_reply_body_get_sequence_parts, _Blast4_reply_body_get_windowmasked_taxids, _Blast4_reply_body_get_protocol_info, _Blast4_reply_body_get_search_info, _Blast4_reply_body_get_databases_ex, Blast4_reply_body, Blast4_finish_params_reply, _Blast4_get_windowmasked_taxids_reply__item_, Blast4_get_windowmasked_taxids_reply, _Blast4_get_databases_reply__item_, Blast4_get_databases_reply, _Blast4_get_databases_ex_reply__item_, Blast4_get_databases_ex_reply, _Blast4_get_matrices_reply__item_, Blast4_get_matrices_reply, _Blast4_get_parameters_reply__item_, Blast4_get_parameters_reply, _Blast4_get_paramsets_reply__item_, Blast4_get_paramsets_reply, _Blast4_get_programs_reply__item_, Blast4_get_programs_reply, _Blast4_get_search_results_reply_alignments, _Blast4_get_search_results_reply_phi_alignments, __Blast4_get_search_results_reply_masks__item_, _Blast4_get_search_results_reply_masks, __Blast4_get_search_results_reply_ka_blocks__item_, _Blast4_get_search_results_reply_ka_blocks, __Blast4_get_search_results_reply_search_stats__item_, _Blast4_get_search_results_reply_search_stats, _Blast4_get_search_results_reply_pssm, _Blast4_get_search_results_reply_simple_results, Blast4_get_search_results_reply, _Blast4_get_sequences_reply__item_, Blast4_get_sequences_reply, _Blast4_seq_part_data_id, _Blast4_seq_part_data_data, Blast4_seq_part_data, _Blast4_get_seq_parts_reply__item_, Blast4_get_seq_parts_reply, _Blast4_queue_search_reply_request_id, Blast4_queue_search_reply, _Blast4_get_queries_reply_queries, Blast4_get_queries_reply, Blast4_get_protocol_info_reply, _Blast4_get_search_info_reply_request_id, _Blast4_get_search_info_reply_info, Blast4_get_search_info_reply, _Blast4_error_code, _Blast4_error_message, Blast4_error, Blast4_error_flags, Blast4_error_code, _Blast4_cutoff_e_value, _Blast4_cutoff_raw_score, Blast4_cutoff, _Blast4_database_name, _Blast4_database_type, Blast4_database, Blast4_seqtech, _Blast4_database_info_database, _Blast4_database_info_description, _Blast4_database_info_last_updated, _Blast4_database_info_total_length, _Blast4_database_info_num_sequences, _Blast4_database_info_seqtech, _Blast4_database_info_taxid, _Blast4_database_info_extended, Blast4_database_info, Blast4_frame_type, _Blast4_ka_block_lambda_, _Blast4_ka_block_k, _Blast4_ka_block_h, _Blast4_ka_block_gapped, Blast4_ka_block, __Blast4_mask_locations__item_, _Blast4_mask_locations, _Blast4_mask_frame, Blast4_mask, _Blast4_matrix_id_residue_type, _Blast4_matrix_id_name, Blast4_matrix_id, _Blast4_parameter_name, _Blast4_parameter_value, Blast4_parameter, _Blast4_parameter_info_name, _Blast4_parameter_info_type, Blast4_parameter_info, _Blast4_task_info_name, _Blast4_task_info_documentation, Blast4_task_info, _Blast4_program_info_program, __Blast4_program_info_services__item_, _Blast4_program_info_services, Blast4_program_info, Blast4_residue_type, Blast4_strand_type, _Blast4_subject_database, __Blast4_subject_sequences__item_, _Blast4_subject_sequences, __Blast4_subject_seq_loc_list__item_, _Blast4_subject_seq_loc_list, Blast4_subject, _Blast4_parameters__item_, Blast4_parameters, _Blast4_phi_alignments_num_alignments, __Blast4_phi_alignments_seq_locs__item_, _Blast4_phi_alignments_seq_locs, Blast4_phi_alignments, _Blast4_value_big_integer, _Blast4_value_bioseq, _Blast4_value_boolean, _Blast4_value_cutoff, _Blast4_value_integer, _Blast4_value_matrix, _Blast4_value_real, _Blast4_value_seq_align, _Blast4_value_seq_id, _Blast4_value_seq_loc, _Blast4_value_strand_type, _Blast4_value_string, __Blast4_value_big_integer_list__item_, _Blast4_value_big_integer_list, __Blast4_value_bioseq_list__item_, _Blast4_value_bioseq_list, __Blast4_value_boolean_list__item_, _Blast4_value_boolean_list, __Blast4_value_cutoff_list__item_, _Blast4_value_cutoff_list, __Blast4_value_integer_list__item_, _Blast4_value_integer_list, __Blast4_value_matrix_list__item_, _Blast4_value_matrix_list, __Blast4_value_real_list__item_, _Blast4_value_real_list, __Blast4_value_seq_align_list__item_, _Blast4_value_seq_align_list, __Blast4_value_seq_id_list__item_, _Blast4_value_seq_id_list, __Blast4_value_seq_loc_list__item_, _Blast4_value_seq_loc_list, __Blast4_value_strand_type_list__item_, _Blast4_value_strand_type_list, __Blast4_value_string_list__item_, _Blast4_value_string_list, _Blast4_value_bioseq_set, _Blast4_value_seq_align_set, _Blast4_value_query_mask, Blast4_value, __Blast4_simple_results_all_alignments__item_, _Blast4_simple_results_all_alignments, Blast4_simple_results, _Blast4_alignments_for_query_query_id, __Blast4_alignments_for_query_alignments__item_, _Blast4_alignments_for_query_alignments, Blast4_alignments_for_query, _Blast4_simple_alignment_subject_id, _Blast4_simple_alignment_e_value, _Blast4_simple_alignment_bit_score, _Blast4_simple_alignment_num_identities, _Blast4_simple_alignment_num_indels, _Blast4_simple_alignment_full_query_range, _Blast4_simple_alignment_full_subject_range, Blast4_simple_alignment, _Blast4_range_start, _Blast4_range_end, _Blast4_range_strand, Blast4_range, ] class NCBI_BlastDL: _name_ = u'NCBI-BlastDL' _oid_ = [] _obj_ = [ u'Blast-def-line-set', u'Blast-def-line', u'Blast-filter-program', u'Blast-mask-list', u'Blast-db-mask-info', ] _type_ = [ u'Blast-def-line-set', u'Blast-def-line', u'Blast-filter-program', u'Blast-mask-list', u'Blast-db-mask-info', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Blast-def-line-set >-----# Blast_def_line_set = SEQ_OF(name=u'Blast-def-line-set', mode=MODE_TYPE) _Blast_def_line_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastDL', 'Blast-def-line'))) Blast_def_line_set._cont = _Blast_def_line_set__item_ #-----< Blast-def-line >-----# Blast_def_line = SEQ(name=u'Blast-def-line', mode=MODE_TYPE) _Blast_def_line_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast_def_line_seqid = SEQ_OF(name=u'seqid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast_def_line_seqid__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Blast_def_line_seqid._cont = __Blast_def_line_seqid__item_ _Blast_def_line_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Blast_def_line_memberships = SEQ_OF(name=u'memberships', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast_def_line_memberships__item_ = INT(name='_item_', mode=MODE_TYPE) _Blast_def_line_memberships._cont = __Blast_def_line_memberships__item_ _Blast_def_line_links = SEQ_OF(name=u'links', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast_def_line_links__item_ = INT(name='_item_', mode=MODE_TYPE) _Blast_def_line_links._cont = __Blast_def_line_links__item_ _Blast_def_line_other_info = SEQ_OF(name=u'other-info', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Blast_def_line_other_info__item_ = INT(name='_item_', mode=MODE_TYPE) _Blast_def_line_other_info._cont = __Blast_def_line_other_info__item_ Blast_def_line._cont = ASN1Dict([ (u'title', _Blast_def_line_title), (u'seqid', _Blast_def_line_seqid), (u'taxid', _Blast_def_line_taxid), (u'memberships', _Blast_def_line_memberships), (u'links', _Blast_def_line_links), (u'other-info', _Blast_def_line_other_info), ]) Blast_def_line._ext = None #-----< Blast-filter-program >-----# Blast_filter_program = INT(name=u'Blast-filter-program', mode=MODE_TYPE) Blast_filter_program._cont = ASN1Dict([(u'not-set', 0), (u'dust', 10), (u'seg', 20), (u'windowmasker', 30), (u'repeat', 40), (u'other', 100), (u'max', 255)]) #-----< Blast-mask-list >-----# Blast_mask_list = SEQ(name=u'Blast-mask-list', mode=MODE_TYPE) _Blast_mask_list_masks = SEQ_OF(name=u'masks', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Blast_mask_list_masks__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Blast_mask_list_masks._cont = __Blast_mask_list_masks__item_ _Blast_mask_list_more = BOOL(name=u'more', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Blast_mask_list._cont = ASN1Dict([ (u'masks', _Blast_mask_list_masks), (u'more', _Blast_mask_list_more), ]) Blast_mask_list._ext = None #-----< Blast-db-mask-info >-----# Blast_db_mask_info = SEQ(name=u'Blast-db-mask-info', mode=MODE_TYPE) _Blast_db_mask_info_algo_id = INT(name=u'algo-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast_db_mask_info_algo_program = INT(name=u'algo-program', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastDL', 'Blast-filter-program'))) _Blast_db_mask_info_algo_options = STR_VIS(name=u'algo-options', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Blast_db_mask_info_masks = SEQ(name=u'masks', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastDL', 'Blast-mask-list'))) Blast_db_mask_info._cont = ASN1Dict([ (u'algo-id', _Blast_db_mask_info_algo_id), (u'algo-program', _Blast_db_mask_info_algo_program), (u'algo-options', _Blast_db_mask_info_algo_options), (u'masks', _Blast_db_mask_info_masks), ]) Blast_db_mask_info._ext = None _all_ = [ _Blast_def_line_set__item_, Blast_def_line_set, _Blast_def_line_title, __Blast_def_line_seqid__item_, _Blast_def_line_seqid, _Blast_def_line_taxid, __Blast_def_line_memberships__item_, _Blast_def_line_memberships, __Blast_def_line_links__item_, _Blast_def_line_links, __Blast_def_line_other_info__item_, _Blast_def_line_other_info, Blast_def_line, Blast_filter_program, __Blast_mask_list_masks__item_, _Blast_mask_list_masks, _Blast_mask_list_more, Blast_mask_list, _Blast_db_mask_info_algo_id, _Blast_db_mask_info_algo_program, _Blast_db_mask_info_algo_options, _Blast_db_mask_info_masks, Blast_db_mask_info, ] class NCBI_BlastOutput2: _name_ = u'NCBI-BlastOutput2' _oid_ = [] _obj_ = [ u'BigInt', u'BlastOutput2', u'BlastXML2', u'Report', u'Err', u'Target', u'Results', u'Iteration', u'Search', u'Parameters', u'Range', u'Statistics', u'HitDescr', u'Hit', u'Hsp', ] _type_ = [ u'BigInt', u'BlastOutput2', u'BlastXML2', u'Report', u'Err', u'Target', u'Results', u'Iteration', u'Search', u'Parameters', u'Range', u'Statistics', u'HitDescr', u'Hit', u'Hsp', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< BigInt >-----# BigInt = INT(name=u'BigInt', mode=MODE_TYPE, tag=(2, TAG_APPLICATION, TAG_IMPLICIT)) #-----< BlastOutput2 >-----# BlastOutput2 = SEQ(name=u'BlastOutput2', mode=MODE_TYPE) _BlastOutput2_report = SEQ(name=u'report', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Report')), opt=True) _BlastOutput2_error = SEQ(name=u'error', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Err')), opt=True) BlastOutput2._cont = ASN1Dict([ (u'report', _BlastOutput2_report), (u'error', _BlastOutput2_error), ]) BlastOutput2._ext = None #-----< BlastXML2 >-----# BlastXML2 = SET_OF(name=u'BlastXML2', mode=MODE_TYPE) _BlastXML2__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'BlastOutput2'))) BlastXML2._cont = _BlastXML2__item_ #-----< Report >-----# Report = SEQ(name=u'Report', mode=MODE_TYPE) _Report_program = STR_VIS(name=u'program', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Report_version = STR_VIS(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Report_reference = STR_VIS(name=u'reference', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Report_search_target = CHOICE(name=u'search-target', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Target'))) _Report_params = SEQ(name=u'params', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Parameters'))) _Report_results = CHOICE(name=u'results', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Results'))) Report._cont = ASN1Dict([ (u'program', _Report_program), (u'version', _Report_version), (u'reference', _Report_reference), (u'search-target', _Report_search_target), (u'params', _Report_params), (u'results', _Report_results), ]) Report._ext = None #-----< Err >-----# Err = SEQ(name=u'Err', mode=MODE_TYPE) _Err_code = INT(name=u'code', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Err_message = STR_VIS(name=u'message', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Err._cont = ASN1Dict([ (u'code', _Err_code), (u'message', _Err_message), ]) Err._ext = None #-----< Target >-----# Target = CHOICE(name=u'Target', mode=MODE_TYPE) _Target_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Target_subjects = SEQ_OF(name=u'subjects', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Target_subjects__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Target_subjects._cont = __Target_subjects__item_ Target._cont = ASN1Dict([ (u'db', _Target_db), (u'subjects', _Target_subjects), ]) Target._ext = None #-----< Results >-----# Results = CHOICE(name=u'Results', mode=MODE_TYPE) _Results_iterations = SEQ_OF(name=u'iterations', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Results_iterations__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'Iteration'))) _Results_iterations._cont = __Results_iterations__item_ _Results_search = SEQ(name=u'search', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Search'))) _Results_bl2seq = SEQ_OF(name=u'bl2seq', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Results_bl2seq__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'Search'))) _Results_bl2seq._cont = __Results_bl2seq__item_ Results._cont = ASN1Dict([ (u'iterations', _Results_iterations), (u'search', _Results_search), (u'bl2seq', _Results_bl2seq), ]) Results._ext = None #-----< Iteration >-----# Iteration = SEQ(name=u'Iteration', mode=MODE_TYPE) _Iteration_iter_num = INT(name=u'iter-num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Iteration_search = SEQ(name=u'search', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Search'))) Iteration._cont = ASN1Dict([ (u'iter-num', _Iteration_iter_num), (u'search', _Iteration_search), ]) Iteration._ext = None #-----< Search >-----# Search = SEQ(name=u'Search', mode=MODE_TYPE) _Search_query_id = STR_VIS(name=u'query-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Search_query_title = STR_VIS(name=u'query-title', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Search_query_len = INT(name=u'query-len', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Search_query_masking = SEQ_OF(name=u'query-masking', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Search_query_masking__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'Range'))) _Search_query_masking._cont = __Search_query_masking__item_ _Search_hits = SEQ_OF(name=u'hits', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Search_hits__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'Hit'))) _Search_hits._cont = __Search_hits__item_ _Search_stat = SEQ(name=u'stat', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'Statistics')), opt=True) _Search_message = STR_VIS(name=u'message', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Search._cont = ASN1Dict([ (u'query-id', _Search_query_id), (u'query-title', _Search_query_title), (u'query-len', _Search_query_len), (u'query-masking', _Search_query_masking), (u'hits', _Search_hits), (u'stat', _Search_stat), (u'message', _Search_message), ]) Search._ext = None #-----< Parameters >-----# Parameters = SEQ(name=u'Parameters', mode=MODE_TYPE) _Parameters_matrix = STR_VIS(name=u'matrix', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_expect = REAL(name=u'expect', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Parameters_include = REAL(name=u'include', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Parameters_sc_match = INT(name=u'sc-match', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_sc_mismatch = INT(name=u'sc-mismatch', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_gap_open = INT(name=u'gap-open', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_gap_extend = INT(name=u'gap-extend', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_filter = STR_VIS(name=u'filter', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_pattern = STR_VIS(name=u'pattern', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_entrez_query = STR_VIS(name=u'entrez-query', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_cbs = INT(name=u'cbs', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_query_gencode = INT(name=u'query-gencode', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_db_gencode = INT(name=u'db-gencode', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_bl2seq_mode = STR_VIS(name=u'bl2seq-mode', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Parameters._cont = ASN1Dict([ (u'matrix', _Parameters_matrix), (u'expect', _Parameters_expect), (u'include', _Parameters_include), (u'sc-match', _Parameters_sc_match), (u'sc-mismatch', _Parameters_sc_mismatch), (u'gap-open', _Parameters_gap_open), (u'gap-extend', _Parameters_gap_extend), (u'filter', _Parameters_filter), (u'pattern', _Parameters_pattern), (u'entrez-query', _Parameters_entrez_query), (u'cbs', _Parameters_cbs), (u'query-gencode', _Parameters_query_gencode), (u'db-gencode', _Parameters_db_gencode), (u'bl2seq-mode', _Parameters_bl2seq_mode), ]) Parameters._ext = None #-----< Range >-----# Range = SEQ(name=u'Range', mode=MODE_TYPE) _Range_from_ = INT(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Range_to = INT(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Range._cont = ASN1Dict([ (u'from', _Range_from_), (u'to', _Range_to), ]) Range._ext = None #-----< Statistics >-----# Statistics = SEQ(name=u'Statistics', mode=MODE_TYPE) _Statistics_db_num = INT(name=u'db-num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'BigInt')), opt=True) _Statistics_db_len = INT(name=u'db-len', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'BigInt')), opt=True) _Statistics_hsp_len = INT(name=u'hsp-len', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Statistics_eff_space = INT(name=u'eff-space', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput2', 'BigInt'))) _Statistics_kappa = REAL(name=u'kappa', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Statistics_lambda_ = REAL(name=u'lambda', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Statistics_entropy = REAL(name=u'entropy', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) Statistics._cont = ASN1Dict([ (u'db-num', _Statistics_db_num), (u'db-len', _Statistics_db_len), (u'hsp-len', _Statistics_hsp_len), (u'eff-space', _Statistics_eff_space), (u'kappa', _Statistics_kappa), (u'lambda', _Statistics_lambda_), (u'entropy', _Statistics_entropy), ]) Statistics._ext = None #-----< HitDescr >-----# HitDescr = SEQ(name=u'HitDescr', mode=MODE_TYPE) _HitDescr_id = STR_VIS(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HitDescr_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HitDescr_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HitDescr_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HitDescr_sciname = STR_VIS(name=u'sciname', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HitDescr._cont = ASN1Dict([ (u'id', _HitDescr_id), (u'accession', _HitDescr_accession), (u'title', _HitDescr_title), (u'taxid', _HitDescr_taxid), (u'sciname', _HitDescr_sciname), ]) HitDescr._ext = None #-----< Hit >-----# Hit = SEQ(name=u'Hit', mode=MODE_TYPE) _Hit_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_description = SEQ_OF(name=u'description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Hit_description__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'HitDescr'))) _Hit_description._cont = __Hit_description__item_ _Hit_len = INT(name=u'len', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_hsps = SEQ_OF(name=u'hsps', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Hit_hsps__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput2', 'Hsp'))) _Hit_hsps._cont = __Hit_hsps__item_ Hit._cont = ASN1Dict([ (u'num', _Hit_num), (u'description', _Hit_description), (u'len', _Hit_len), (u'hsps', _Hit_hsps), ]) Hit._ext = None #-----< Hsp >-----# Hsp = SEQ(name=u'Hsp', mode=MODE_TYPE) _Hsp_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_bit_score = REAL(name=u'bit-score', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Hsp_score = REAL(name=u'score', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Hsp_evalue = REAL(name=u'evalue', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Hsp_identity = INT(name=u'identity', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_positive = INT(name=u'positive', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_density = INT(name=u'density', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_pattern_from = INT(name=u'pattern-from', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_pattern_to = INT(name=u'pattern-to', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_query_from = INT(name=u'query-from', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_query_to = INT(name=u'query-to', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_query_strand = STR_VIS(name=u'query-strand', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_query_frame = INT(name=u'query-frame', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_hit_from = INT(name=u'hit-from', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_hit_to = INT(name=u'hit-to', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_hit_strand = STR_VIS(name=u'hit-strand', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_hit_frame = INT(name=u'hit-frame', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_align_len = INT(name=u'align-len', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_gaps = INT(name=u'gaps', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_qseq = STR_VIS(name=u'qseq', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_hseq = STR_VIS(name=u'hseq', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_midline = STR_VIS(name=u'midline', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Hsp._cont = ASN1Dict([ (u'num', _Hsp_num), (u'bit-score', _Hsp_bit_score), (u'score', _Hsp_score), (u'evalue', _Hsp_evalue), (u'identity', _Hsp_identity), (u'positive', _Hsp_positive), (u'density', _Hsp_density), (u'pattern-from', _Hsp_pattern_from), (u'pattern-to', _Hsp_pattern_to), (u'query-from', _Hsp_query_from), (u'query-to', _Hsp_query_to), (u'query-strand', _Hsp_query_strand), (u'query-frame', _Hsp_query_frame), (u'hit-from', _Hsp_hit_from), (u'hit-to', _Hsp_hit_to), (u'hit-strand', _Hsp_hit_strand), (u'hit-frame', _Hsp_hit_frame), (u'align-len', _Hsp_align_len), (u'gaps', _Hsp_gaps), (u'qseq', _Hsp_qseq), (u'hseq', _Hsp_hseq), (u'midline', _Hsp_midline), ]) Hsp._ext = None _all_ = [ BigInt, _BlastOutput2_report, _BlastOutput2_error, BlastOutput2, _BlastXML2__item_, BlastXML2, _Report_program, _Report_version, _Report_reference, _Report_search_target, _Report_params, _Report_results, Report, _Err_code, _Err_message, Err, _Target_db, __Target_subjects__item_, _Target_subjects, Target, __Results_iterations__item_, _Results_iterations, _Results_search, __Results_bl2seq__item_, _Results_bl2seq, Results, _Iteration_iter_num, _Iteration_search, Iteration, _Search_query_id, _Search_query_title, _Search_query_len, __Search_query_masking__item_, _Search_query_masking, __Search_hits__item_, _Search_hits, _Search_stat, _Search_message, Search, _Parameters_matrix, _Parameters_expect, _Parameters_include, _Parameters_sc_match, _Parameters_sc_mismatch, _Parameters_gap_open, _Parameters_gap_extend, _Parameters_filter, _Parameters_pattern, _Parameters_entrez_query, _Parameters_cbs, _Parameters_query_gencode, _Parameters_db_gencode, _Parameters_bl2seq_mode, Parameters, _Range_from_, _Range_to, Range, _Statistics_db_num, _Statistics_db_len, _Statistics_hsp_len, _Statistics_eff_space, _Statistics_kappa, _Statistics_lambda_, _Statistics_entropy, Statistics, _HitDescr_id, _HitDescr_accession, _HitDescr_title, _HitDescr_taxid, _HitDescr_sciname, HitDescr, _Hit_num, __Hit_description__item_, _Hit_description, _Hit_len, __Hit_hsps__item_, _Hit_hsps, Hit, _Hsp_num, _Hsp_bit_score, _Hsp_score, _Hsp_evalue, _Hsp_identity, _Hsp_positive, _Hsp_density, _Hsp_pattern_from, _Hsp_pattern_to, _Hsp_query_from, _Hsp_query_to, _Hsp_query_strand, _Hsp_query_frame, _Hsp_hit_from, _Hsp_hit_to, _Hsp_hit_strand, _Hsp_hit_frame, _Hsp_align_len, _Hsp_gaps, _Hsp_qseq, _Hsp_hseq, _Hsp_midline, Hsp, ] class NCBI_BlastOutput: _name_ = u'NCBI-BlastOutput' _oid_ = [] _obj_ = [ u'BigInt', u'BlastOutput', u'Iteration', u'Parameters', u'Statistics', u'Hit', u'Hsp', ] _type_ = [ u'BigInt', u'BlastOutput', u'Iteration', u'Parameters', u'Statistics', u'Hit', u'Hsp', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< BigInt >-----# BigInt = INT(name=u'BigInt', mode=MODE_TYPE, tag=(2, TAG_APPLICATION, TAG_IMPLICIT)) #-----< BlastOutput >-----# BlastOutput = SEQ(name=u'BlastOutput', mode=MODE_TYPE) _BlastOutput_program = STR_VIS(name=u'program', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_version = STR_VIS(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_reference = STR_VIS(name=u'reference', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_query_ID = STR_VIS(name=u'query-ID', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_query_def = STR_VIS(name=u'query-def', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_query_len = INT(name=u'query-len', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlastOutput_query_seq = STR_VIS(name=u'query-seq', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BlastOutput_param = SEQ(name=u'param', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput', 'Parameters'))) _BlastOutput_iterations = SEQ_OF(name=u'iterations', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __BlastOutput_iterations__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput', 'Iteration'))) _BlastOutput_iterations._cont = __BlastOutput_iterations__item_ _BlastOutput_mbstat = SEQ(name=u'mbstat', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput', 'Statistics')), opt=True) BlastOutput._cont = ASN1Dict([ (u'program', _BlastOutput_program), (u'version', _BlastOutput_version), (u'reference', _BlastOutput_reference), (u'db', _BlastOutput_db), (u'query-ID', _BlastOutput_query_ID), (u'query-def', _BlastOutput_query_def), (u'query-len', _BlastOutput_query_len), (u'query-seq', _BlastOutput_query_seq), (u'param', _BlastOutput_param), (u'iterations', _BlastOutput_iterations), (u'mbstat', _BlastOutput_mbstat), ]) BlastOutput._ext = None #-----< Iteration >-----# Iteration = SEQ(name=u'Iteration', mode=MODE_TYPE) _Iteration_iter_num = INT(name=u'iter-num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Iteration_query_ID = STR_VIS(name=u'query-ID', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Iteration_query_def = STR_VIS(name=u'query-def', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Iteration_query_len = INT(name=u'query-len', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Iteration_hits = SEQ_OF(name=u'hits', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Iteration_hits__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput', 'Hit'))) _Iteration_hits._cont = __Iteration_hits__item_ _Iteration_stat = SEQ(name=u'stat', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput', 'Statistics')), opt=True) _Iteration_message = STR_VIS(name=u'message', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Iteration._cont = ASN1Dict([ (u'iter-num', _Iteration_iter_num), (u'query-ID', _Iteration_query_ID), (u'query-def', _Iteration_query_def), (u'query-len', _Iteration_query_len), (u'hits', _Iteration_hits), (u'stat', _Iteration_stat), (u'message', _Iteration_message), ]) Iteration._ext = None #-----< Parameters >-----# Parameters = SEQ(name=u'Parameters', mode=MODE_TYPE) _Parameters_matrix = STR_VIS(name=u'matrix', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_expect = REAL(name=u'expect', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Parameters_include = REAL(name=u'include', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Parameters_sc_match = INT(name=u'sc-match', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_sc_mismatch = INT(name=u'sc-mismatch', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_gap_open = INT(name=u'gap-open', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Parameters_gap_extend = INT(name=u'gap-extend', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Parameters_filter = STR_VIS(name=u'filter', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_pattern = STR_VIS(name=u'pattern', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Parameters_entrez_query = STR_VIS(name=u'entrez-query', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Parameters._cont = ASN1Dict([ (u'matrix', _Parameters_matrix), (u'expect', _Parameters_expect), (u'include', _Parameters_include), (u'sc-match', _Parameters_sc_match), (u'sc-mismatch', _Parameters_sc_mismatch), (u'gap-open', _Parameters_gap_open), (u'gap-extend', _Parameters_gap_extend), (u'filter', _Parameters_filter), (u'pattern', _Parameters_pattern), (u'entrez-query', _Parameters_entrez_query), ]) Parameters._ext = None #-----< Statistics >-----# Statistics = SEQ(name=u'Statistics', mode=MODE_TYPE) _Statistics_db_num = INT(name=u'db-num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Statistics_db_len = INT(name=u'db-len', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BlastOutput', 'BigInt'))) _Statistics_hsp_len = INT(name=u'hsp-len', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Statistics_eff_space = REAL(name=u'eff-space', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Statistics_kappa = REAL(name=u'kappa', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Statistics_lambda_ = REAL(name=u'lambda', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Statistics_entropy = REAL(name=u'entropy', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) Statistics._cont = ASN1Dict([ (u'db-num', _Statistics_db_num), (u'db-len', _Statistics_db_len), (u'hsp-len', _Statistics_hsp_len), (u'eff-space', _Statistics_eff_space), (u'kappa', _Statistics_kappa), (u'lambda', _Statistics_lambda_), (u'entropy', _Statistics_entropy), ]) Statistics._ext = None #-----< Hit >-----# Hit = SEQ(name=u'Hit', mode=MODE_TYPE) _Hit_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_id = STR_VIS(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_def_ = STR_VIS(name=u'def', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_len = INT(name=u'len', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hit_hsps = SEQ_OF(name=u'hsps', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Hit_hsps__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BlastOutput', 'Hsp'))) _Hit_hsps._cont = __Hit_hsps__item_ Hit._cont = ASN1Dict([ (u'num', _Hit_num), (u'id', _Hit_id), (u'def', _Hit_def_), (u'accession', _Hit_accession), (u'len', _Hit_len), (u'hsps', _Hit_hsps), ]) Hit._ext = None #-----< Hsp >-----# Hsp = SEQ(name=u'Hsp', mode=MODE_TYPE) _Hsp_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_bit_score = REAL(name=u'bit-score', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Hsp_score = REAL(name=u'score', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Hsp_evalue = REAL(name=u'evalue', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Hsp_query_from = INT(name=u'query-from', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_query_to = INT(name=u'query-to', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_hit_from = INT(name=u'hit-from', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_hit_to = INT(name=u'hit-to', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_pattern_from = INT(name=u'pattern-from', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_pattern_to = INT(name=u'pattern-to', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_query_frame = INT(name=u'query-frame', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_hit_frame = INT(name=u'hit-frame', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_identity = INT(name=u'identity', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_positive = INT(name=u'positive', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_gaps = INT(name=u'gaps', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_align_len = INT(name=u'align-len', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_density = INT(name=u'density', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Hsp_qseq = STR_VIS(name=u'qseq', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_hseq = STR_VIS(name=u'hseq', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Hsp_midline = STR_VIS(name=u'midline', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Hsp._cont = ASN1Dict([ (u'num', _Hsp_num), (u'bit-score', _Hsp_bit_score), (u'score', _Hsp_score), (u'evalue', _Hsp_evalue), (u'query-from', _Hsp_query_from), (u'query-to', _Hsp_query_to), (u'hit-from', _Hsp_hit_from), (u'hit-to', _Hsp_hit_to), (u'pattern-from', _Hsp_pattern_from), (u'pattern-to', _Hsp_pattern_to), (u'query-frame', _Hsp_query_frame), (u'hit-frame', _Hsp_hit_frame), (u'identity', _Hsp_identity), (u'positive', _Hsp_positive), (u'gaps', _Hsp_gaps), (u'align-len', _Hsp_align_len), (u'density', _Hsp_density), (u'qseq', _Hsp_qseq), (u'hseq', _Hsp_hseq), (u'midline', _Hsp_midline), ]) Hsp._ext = None _all_ = [ BigInt, _BlastOutput_program, _BlastOutput_version, _BlastOutput_reference, _BlastOutput_db, _BlastOutput_query_ID, _BlastOutput_query_def, _BlastOutput_query_len, _BlastOutput_query_seq, _BlastOutput_param, __BlastOutput_iterations__item_, _BlastOutput_iterations, _BlastOutput_mbstat, BlastOutput, _Iteration_iter_num, _Iteration_query_ID, _Iteration_query_def, _Iteration_query_len, __Iteration_hits__item_, _Iteration_hits, _Iteration_stat, _Iteration_message, Iteration, _Parameters_matrix, _Parameters_expect, _Parameters_include, _Parameters_sc_match, _Parameters_sc_mismatch, _Parameters_gap_open, _Parameters_gap_extend, _Parameters_filter, _Parameters_pattern, _Parameters_entrez_query, Parameters, _Statistics_db_num, _Statistics_db_len, _Statistics_hsp_len, _Statistics_eff_space, _Statistics_kappa, _Statistics_lambda_, _Statistics_entropy, Statistics, _Hit_num, _Hit_id, _Hit_def_, _Hit_accession, _Hit_len, __Hit_hsps__item_, _Hit_hsps, Hit, _Hsp_num, _Hsp_bit_score, _Hsp_score, _Hsp_evalue, _Hsp_query_from, _Hsp_query_to, _Hsp_hit_from, _Hsp_hit_to, _Hsp_pattern_from, _Hsp_pattern_to, _Hsp_query_frame, _Hsp_hit_frame, _Hsp_identity, _Hsp_positive, _Hsp_gaps, _Hsp_align_len, _Hsp_density, _Hsp_qseq, _Hsp_hseq, _Hsp_midline, Hsp, ] class NCBI_Cdd: _name_ = u'NCBI-Cdd' _oid_ = [] _obj_ = [ u'Cdd-org-ref', u'Cdd-org-ref-set', u'Cdd-pref-node-descr', u'Cdd-pref-node-descr-set', u'Cdd-pref-nodes', u'Global-id', u'Cdd-id', u'Cdd-id-set', u'Cdd-repeat', u'Cdd-book-ref', u'Cdd-descr', u'Cdd-descr-set', u'Cdd-tree', u'Cdd-tree-set', u'Matrix', u'Triangle', u'Update-comment', u'Update-align', u'Reject-id', u'Feature-evidence', u'Align-annot', u'Align-annot-set', u'Domain-parent', u'Sequence-tree', u'SeqTree-node', u'Algorithm-type', u'Node-annotation', u'Cdd', u'Cdd-set', u'Cdd-Viewer-Rect', u'Cdd-Viewer', u'Cdd-Script', u'Cdd-Project', ] _type_ = [ u'Cdd-org-ref', u'Cdd-org-ref-set', u'Cdd-pref-node-descr', u'Cdd-pref-node-descr-set', u'Cdd-pref-nodes', u'Global-id', u'Cdd-id', u'Cdd-id-set', u'Cdd-repeat', u'Cdd-book-ref', u'Cdd-descr', u'Cdd-descr-set', u'Cdd-tree', u'Cdd-tree-set', u'Matrix', u'Triangle', u'Update-comment', u'Update-align', u'Reject-id', u'Feature-evidence', u'Align-annot', u'Align-annot-set', u'Domain-parent', u'Sequence-tree', u'SeqTree-node', u'Algorithm-type', u'Node-annotation', u'Cdd', u'Cdd-set', u'Cdd-Viewer-Rect', u'Cdd-Viewer', u'Cdd-Script', u'Cdd-Project', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Cdd-org-ref >-----# Cdd_org_ref = SEQ(name=u'Cdd-org-ref', mode=MODE_TYPE) _Cdd_org_ref_reference = SEQ(name=u'reference', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'Org-ref'))) _Cdd_org_ref_active = BOOL(name=u'active', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=True) _Cdd_org_ref_parent_tax_id = INT(name=u'parent-tax-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdd_org_ref_rank = STR_VIS(name=u'rank', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cdd_org_ref._cont = ASN1Dict([ (u'reference', _Cdd_org_ref_reference), (u'active', _Cdd_org_ref_active), (u'parent-tax-id', _Cdd_org_ref_parent_tax_id), (u'rank', _Cdd_org_ref_rank), ]) Cdd_org_ref._ext = None #-----< Cdd-org-ref-set >-----# Cdd_org_ref_set = SET_OF(name=u'Cdd-org-ref-set', mode=MODE_TYPE) _Cdd_org_ref_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-org-ref'))) Cdd_org_ref_set._cont = _Cdd_org_ref_set__item_ #-----< Cdd-pref-node-descr >-----# Cdd_pref_node_descr = CHOICE(name=u'Cdd-pref-node-descr', mode=MODE_TYPE) _Cdd_pref_node_descr_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Cdd_pref_node_descr_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Cdd_pref_node_descr._cont = ASN1Dict([ (u'create-date', _Cdd_pref_node_descr_create_date), (u'description', _Cdd_pref_node_descr_description), ]) Cdd_pref_node_descr._ext = None #-----< Cdd-pref-node-descr-set >-----# Cdd_pref_node_descr_set = SET_OF(name=u'Cdd-pref-node-descr-set', mode=MODE_TYPE) _Cdd_pref_node_descr_set__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-pref-node-descr'))) Cdd_pref_node_descr_set._cont = _Cdd_pref_node_descr_set__item_ #-----< Cdd-pref-nodes >-----# Cdd_pref_nodes = SEQ(name=u'Cdd-pref-nodes', mode=MODE_TYPE) _Cdd_pref_nodes_preferred_nodes = SET_OF(name=u'preferred-nodes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-org-ref-set'))) _Cdd_pref_nodes_model_organisms = SET_OF(name=u'model-organisms', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-org-ref-set')), opt=True) _Cdd_pref_nodes_optional_nodes = SET_OF(name=u'optional-nodes', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-org-ref-set')), opt=True) _Cdd_pref_nodes_description = SET_OF(name=u'description', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-pref-node-descr-set')), opt=True) Cdd_pref_nodes._cont = ASN1Dict([ (u'preferred-nodes', _Cdd_pref_nodes_preferred_nodes), (u'model-organisms', _Cdd_pref_nodes_model_organisms), (u'optional-nodes', _Cdd_pref_nodes_optional_nodes), (u'description', _Cdd_pref_nodes_description), ]) Cdd_pref_nodes._ext = None #-----< Global-id >-----# Global_id = SEQ(name=u'Global-id', mode=MODE_TYPE) _Global_id_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Global_id_release = STR_VIS(name=u'release', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Global_id_version = INT(name=u'version', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Global_id_database = STR_VIS(name=u'database', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Global_id._cont = ASN1Dict([ (u'accession', _Global_id_accession), (u'release', _Global_id_release), (u'version', _Global_id_version), (u'database', _Global_id_database), ]) Global_id._ext = None #-----< Cdd-id >-----# Cdd_id = CHOICE(name=u'Cdd-id', mode=MODE_TYPE) _Cdd_id_uid = INT(name=u'uid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_id_gid = SEQ(name=u'gid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Global-id'))) Cdd_id._cont = ASN1Dict([ (u'uid', _Cdd_id_uid), (u'gid', _Cdd_id_gid), ]) Cdd_id._ext = None #-----< Cdd-id-set >-----# Cdd_id_set = SEQ_OF(name=u'Cdd-id-set', mode=MODE_TYPE) _Cdd_id_set__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id'))) Cdd_id_set._cont = _Cdd_id_set__item_ #-----< Cdd-repeat >-----# Cdd_repeat = SEQ(name=u'Cdd-repeat', mode=MODE_TYPE) _Cdd_repeat_count = INT(name=u'count', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_repeat_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) _Cdd_repeat_avglen = INT(name=u'avglen', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cdd_repeat._cont = ASN1Dict([ (u'count', _Cdd_repeat_count), (u'location', _Cdd_repeat_location), (u'avglen', _Cdd_repeat_avglen), ]) Cdd_repeat._ext = None #-----< Cdd-book-ref >-----# Cdd_book_ref = SEQ(name=u'Cdd-book-ref', mode=MODE_TYPE) _Cdd_book_ref_bookname = STR_VIS(name=u'bookname', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_book_ref_textelement = ENUM(name=u'textelement', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_book_ref_textelement._cont = ASN1Dict([(u'unassigned', 0), (u'section', 1), (u'figgrp', 2), (u'table', 3), (u'chapter', 4), (u'biblist', 5), (u'box', 6), (u'glossary', 7), (u'appendix', 8), (u'other', 255)]) _Cdd_book_ref_textelement._ext = None _Cdd_book_ref_elementid = INT(name=u'elementid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdd_book_ref_subelementid = INT(name=u'subelementid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdd_book_ref_celementid = STR_VIS(name=u'celementid', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdd_book_ref_csubelementid = STR_VIS(name=u'csubelementid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cdd_book_ref._cont = ASN1Dict([ (u'bookname', _Cdd_book_ref_bookname), (u'textelement', _Cdd_book_ref_textelement), (u'elementid', _Cdd_book_ref_elementid), (u'subelementid', _Cdd_book_ref_subelementid), (u'celementid', _Cdd_book_ref_celementid), (u'csubelementid', _Cdd_book_ref_csubelementid), ]) Cdd_book_ref._ext = None #-----< Cdd-descr >-----# Cdd_descr = CHOICE(name=u'Cdd-descr', mode=MODE_TYPE) _Cdd_descr_othername = STR_VIS(name=u'othername', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_category = STR_VIS(name=u'category', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_reference = CHOICE(name=u'reference', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Cdd_descr_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Cdd_descr_tax_source = SEQ(name=u'tax-source', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'Org-ref'))) _Cdd_descr_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_status = INT(name=u'status', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_status._cont = ASN1Dict([(u'unassigned', 0), (u'finished-ok', 1), (u'pending-release', 2), (u'other-asis', 3), (u'matrix-only', 4), (u'update-running', 5), (u'auto-updated', 6), (u'claimed', 7), (u'curated-complete', 8), (u'other', 255)]) _Cdd_descr_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Cdd_descr_scrapbook = SEQ_OF(name=u'scrapbook', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cdd_descr_scrapbook__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Cdd_descr_scrapbook._cont = __Cdd_descr_scrapbook__item_ _Cdd_descr_source_id = SEQ_OF(name=u'source-id', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set'))) _Cdd_descr_repeats = SEQ(name=u'repeats', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-repeat'))) _Cdd_descr_old_root = SEQ_OF(name=u'old-root', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set'))) _Cdd_descr_curation_status = INT(name=u'curation-status', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_curation_status._cont = ASN1Dict([(u'unassigned', 0), (u'prein', 1), (u'ofc', 2), (u'iac', 3), (u'ofv1', 4), (u'iav1', 5), (u'ofv2', 6), (u'iav2', 7), (u'postin', 8), (u'other', 255)]) _Cdd_descr_readonly_status = INT(name=u'readonly-status', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_descr_readonly_status._cont = ASN1Dict([(u'unassigned', 0), (u'readonly', 1), (u'readwrite', 2), (u'other', 255)]) _Cdd_descr_book_ref = SEQ(name=u'book-ref', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-book-ref'))) _Cdd_descr_attribution = CHOICE(name=u'attribution', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Cdd_descr_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Cdd_descr._cont = ASN1Dict([ (u'othername', _Cdd_descr_othername), (u'category', _Cdd_descr_category), (u'comment', _Cdd_descr_comment), (u'reference', _Cdd_descr_reference), (u'create-date', _Cdd_descr_create_date), (u'tax-source', _Cdd_descr_tax_source), (u'source', _Cdd_descr_source), (u'status', _Cdd_descr_status), (u'update-date', _Cdd_descr_update_date), (u'scrapbook', _Cdd_descr_scrapbook), (u'source-id', _Cdd_descr_source_id), (u'repeats', _Cdd_descr_repeats), (u'old-root', _Cdd_descr_old_root), (u'curation-status', _Cdd_descr_curation_status), (u'readonly-status', _Cdd_descr_readonly_status), (u'book-ref', _Cdd_descr_book_ref), (u'attribution', _Cdd_descr_attribution), (u'title', _Cdd_descr_title), ]) Cdd_descr._ext = None #-----< Cdd-descr-set >-----# Cdd_descr_set = SET_OF(name=u'Cdd-descr-set', mode=MODE_TYPE) _Cdd_descr_set__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-descr'))) Cdd_descr_set._cont = _Cdd_descr_set__item_ #-----< Cdd-tree >-----# Cdd_tree = SEQ(name=u'Cdd-tree', mode=MODE_TYPE) _Cdd_tree_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_tree_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set'))) _Cdd_tree_description = SET_OF(name=u'description', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-descr-set')), opt=True) _Cdd_tree_parent = CHOICE(name=u'parent', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id')), opt=True) _Cdd_tree_children = SEQ_OF(name=u'children', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) _Cdd_tree_siblings = SEQ_OF(name=u'siblings', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) _Cdd_tree_neighbors = SEQ_OF(name=u'neighbors', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) Cdd_tree._cont = ASN1Dict([ (u'name', _Cdd_tree_name), (u'id', _Cdd_tree_id), (u'description', _Cdd_tree_description), (u'parent', _Cdd_tree_parent), (u'children', _Cdd_tree_children), (u'siblings', _Cdd_tree_siblings), (u'neighbors', _Cdd_tree_neighbors), ]) Cdd_tree._ext = None #-----< Cdd-tree-set >-----# Cdd_tree_set = SEQ_OF(name=u'Cdd-tree-set', mode=MODE_TYPE) _Cdd_tree_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-tree'))) Cdd_tree_set._cont = _Cdd_tree_set__item_ #-----< Matrix >-----# Matrix = SEQ(name=u'Matrix', mode=MODE_TYPE) _Matrix_ncolumns = INT(name=u'ncolumns', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Matrix_nrows = INT(name=u'nrows', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Matrix_row_labels = SEQ_OF(name=u'row-labels', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Matrix_row_labels__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Matrix_row_labels._cont = __Matrix_row_labels__item_ _Matrix_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Matrix_columns = SEQ_OF(name=u'columns', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Matrix_columns__item_ = INT(name='_item_', mode=MODE_TYPE) _Matrix_columns._cont = __Matrix_columns__item_ Matrix._cont = ASN1Dict([ (u'ncolumns', _Matrix_ncolumns), (u'nrows', _Matrix_nrows), (u'row-labels', _Matrix_row_labels), (u'scale-factor', _Matrix_scale_factor), (u'columns', _Matrix_columns), ]) Matrix._ext = None #-----< Triangle >-----# Triangle = SEQ(name=u'Triangle', mode=MODE_TYPE) _Triangle_nelements = INT(name=u'nelements', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Triangle_scores = SET_OF(name=u'scores', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Score-set')), opt=True) _Triangle_div_ranks = SEQ_OF(name=u'div-ranks', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Triangle_div_ranks__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangle_div_ranks._cont = __Triangle_div_ranks__item_ Triangle._cont = ASN1Dict([ (u'nelements', _Triangle_nelements), (u'scores', _Triangle_scores), (u'div-ranks', _Triangle_div_ranks), ]) Triangle._ext = None #-----< Update-comment >-----# Update_comment = CHOICE(name=u'Update-comment', mode=MODE_TYPE) _Update_comment_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Update_comment_addthis = CHOICE(name=u'addthis', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Update_comment_replaces = CHOICE(name=u'replaces', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Update_comment_reject_loc = CHOICE(name=u'reject-loc', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Update_comment_reference = CHOICE(name=u'reference', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) Update_comment._cont = ASN1Dict([ (u'comment', _Update_comment_comment), (u'addthis', _Update_comment_addthis), (u'replaces', _Update_comment_replaces), (u'reject-loc', _Update_comment_reject_loc), (u'reference', _Update_comment_reference), ]) Update_comment._ext = None #-----< Update-align >-----# Update_align = SEQ(name=u'Update-align', mode=MODE_TYPE) _Update_align_description = SEQ_OF(name=u'description', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Update_align_description__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Update-comment'))) _Update_align_description._cont = __Update_align_description__item_ _Update_align_seqannot = SEQ(name=u'seqannot', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot')), opt=True) _Update_align_type = INT(name=u'type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Update_align_type._cont = ASN1Dict([(u'unassigned', 0), (u'update', 1), (u'update-3d', 2), (u'demoted', 51), (u'demoted-3d', 52), (u'other', 255)]) Update_align._cont = ASN1Dict([ (u'description', _Update_align_description), (u'seqannot', _Update_align_seqannot), (u'type', _Update_align_type), ]) Update_align._ext = None #-----< Reject-id >-----# Reject_id = SEQ(name=u'Reject-id', mode=MODE_TYPE) _Reject_id_description = SEQ_OF(name=u'description', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Reject_id_description__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Update-comment'))) _Reject_id_description._cont = __Reject_id_description__item_ _Reject_id_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Reject_id_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Reject_id_ids._cont = __Reject_id_ids__item_ Reject_id._cont = ASN1Dict([ (u'description', _Reject_id_description), (u'ids', _Reject_id_ids), ]) Reject_id._ext = None #-----< Feature-evidence >-----# Feature_evidence = CHOICE(name=u'Feature-evidence', mode=MODE_TYPE) _Feature_evidence_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Feature_evidence_reference = CHOICE(name=u'reference', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Feature_evidence_bsannot = SEQ(name=u'bsannot', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-annot-set'))) _Feature_evidence_seqfeat = SEQ(name=u'seqfeat', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Seq-feat'))) _Feature_evidence_book_ref = SEQ(name=u'book-ref', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-book-ref'))) Feature_evidence._cont = ASN1Dict([ (u'comment', _Feature_evidence_comment), (u'reference', _Feature_evidence_reference), (u'bsannot', _Feature_evidence_bsannot), (u'seqfeat', _Feature_evidence_seqfeat), (u'book-ref', _Feature_evidence_book_ref), ]) Feature_evidence._ext = None #-----< Align-annot >-----# Align_annot = SEQ(name=u'Align-annot', mode=MODE_TYPE) _Align_annot_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Align_annot_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_annot_evidence = SEQ_OF(name=u'evidence', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Align_annot_evidence__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Feature-evidence'))) _Align_annot_evidence._cont = __Align_annot_evidence__item_ _Align_annot_type = INT(name=u'type', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_annot_aliases = SEQ_OF(name=u'aliases', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Align_annot_aliases__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Align_annot_aliases._cont = __Align_annot_aliases__item_ _Align_annot_motif = STR_VIS(name=u'motif', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_annot_motifuse = INT(name=u'motifuse', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Align_annot._cont = ASN1Dict([ (u'location', _Align_annot_location), (u'description', _Align_annot_description), (u'evidence', _Align_annot_evidence), (u'type', _Align_annot_type), (u'aliases', _Align_annot_aliases), (u'motif', _Align_annot_motif), (u'motifuse', _Align_annot_motifuse), ]) Align_annot._ext = None #-----< Align-annot-set >-----# Align_annot_set = SEQ_OF(name=u'Align-annot-set', mode=MODE_TYPE) _Align_annot_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Align-annot'))) Align_annot_set._cont = _Align_annot_set__item_ #-----< Domain-parent >-----# Domain_parent = SEQ(name=u'Domain-parent', mode=MODE_TYPE) _Domain_parent_parent_type = INT(name=u'parent-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Domain_parent_parent_type._cont = ASN1Dict([(u'classical', 0), (u'fusion', 1), (u'deletion', 2), (u'permutation', 3), (u'other', 255)]) _Domain_parent_parentid = CHOICE(name=u'parentid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id'))) _Domain_parent_seqannot = SEQ(name=u'seqannot', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot')), opt=True) Domain_parent._cont = ASN1Dict([ (u'parent-type', _Domain_parent_parent_type), (u'parentid', _Domain_parent_parentid), (u'seqannot', _Domain_parent_seqannot), ]) Domain_parent._ext = None #-----< Sequence-tree >-----# Sequence_tree = SEQ(name=u'Sequence-tree', mode=MODE_TYPE) _Sequence_tree_cdAccession = STR_VIS(name=u'cdAccession', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Sequence_tree_algorithm = SEQ(name=u'algorithm', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Algorithm-type'))) _Sequence_tree_isAnnotated = BOOL(name=u'isAnnotated', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Sequence_tree_root = SEQ(name=u'root', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'SeqTree-node'))) Sequence_tree._cont = ASN1Dict([ (u'cdAccession', _Sequence_tree_cdAccession), (u'algorithm', _Sequence_tree_algorithm), (u'isAnnotated', _Sequence_tree_isAnnotated), (u'root', _Sequence_tree_root), ]) Sequence_tree._ext = None #-----< SeqTree-node >-----# SeqTree_node = SEQ(name=u'SeqTree-node', mode=MODE_TYPE) _SeqTree_node_isAnnotated = BOOL(name=u'isAnnotated', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _SeqTree_node_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _SeqTree_node_distance = REAL(name=u'distance', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _SeqTree_node_children = CHOICE(name=u'children', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __SeqTree_node_children_children = SEQ_OF(name=u'children', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___SeqTree_node_children_children__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'SeqTree-node'))) __SeqTree_node_children_children._cont = ___SeqTree_node_children_children__item_ __SeqTree_node_children_footprint = SEQ(name=u'footprint', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___SeqTree_node_children_footprint_seqRange = SEQ(name=u'seqRange', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval'))) ___SeqTree_node_children_footprint_rowId = INT(name=u'rowId', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SeqTree_node_children_footprint._cont = ASN1Dict([ (u'seqRange', ___SeqTree_node_children_footprint_seqRange), (u'rowId', ___SeqTree_node_children_footprint_rowId), ]) __SeqTree_node_children_footprint._ext = None _SeqTree_node_children._cont = ASN1Dict([ (u'children', __SeqTree_node_children_children), (u'footprint', __SeqTree_node_children_footprint), ]) _SeqTree_node_children._ext = None _SeqTree_node_annotation = SEQ(name=u'annotation', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Node-annotation')), opt=True) SeqTree_node._cont = ASN1Dict([ (u'isAnnotated', _SeqTree_node_isAnnotated), (u'name', _SeqTree_node_name), (u'distance', _SeqTree_node_distance), (u'children', _SeqTree_node_children), (u'annotation', _SeqTree_node_annotation), ]) SeqTree_node._ext = None #-----< Algorithm-type >-----# Algorithm_type = SEQ(name=u'Algorithm-type', mode=MODE_TYPE) _Algorithm_type_scoring_Scheme = INT(name=u'scoring-Scheme', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Algorithm_type_scoring_Scheme._cont = ASN1Dict([(u'unassigned', 0), (u'percent-id', 1), (u'kimura-corrected', 2), (u'aligned-score', 3), (u'aligned-score-ext', 4), (u'aligned-score-filled', 5), (u'blast-footprint', 6), (u'blast-full', 7), (u'hybrid-aligned-score', 8), (u'other', 255)]) _Algorithm_type_clustering_Method = INT(name=u'clustering-Method', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Algorithm_type_clustering_Method._cont = ASN1Dict([(u'unassigned', 0), (u'single-linkage', 1), (u'neighbor-joining', 2), (u'fast-minimum-evolution', 3), (u'other', 255)]) _Algorithm_type_score_Matrix = INT(name=u'score-Matrix', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_score_Matrix._cont = ASN1Dict([(u'unassigned', 0), (u'blosum45', 1), (u'blosum62', 2), (u'blosum80', 3), (u'pam30', 4), (u'pam70', 5), (u'pam250', 6), (u'other', 255)]) _Algorithm_type_gapOpen = INT(name=u'gapOpen', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_gapExtend = INT(name=u'gapExtend', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_gapScaleFactor = INT(name=u'gapScaleFactor', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_nTerminalExt = INT(name=u'nTerminalExt', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_cTerminalExt = INT(name=u'cTerminalExt', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_tree_scope = INT(name=u'tree-scope', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_tree_scope._cont = ASN1Dict([(u'allDescendants', 0), (u'immediateChildrenOnly', 1), (u'selfOnly', 2), (u'other', 255)]) _Algorithm_type_coloring_scope = INT(name=u'coloring-scope', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Algorithm_type_coloring_scope._cont = ASN1Dict([(u'allDescendants', 0), (u'immediateChildrenOnly', 1), (u'other', 255)]) Algorithm_type._cont = ASN1Dict([ (u'scoring-Scheme', _Algorithm_type_scoring_Scheme), (u'clustering-Method', _Algorithm_type_clustering_Method), (u'score-Matrix', _Algorithm_type_score_Matrix), (u'gapOpen', _Algorithm_type_gapOpen), (u'gapExtend', _Algorithm_type_gapExtend), (u'gapScaleFactor', _Algorithm_type_gapScaleFactor), (u'nTerminalExt', _Algorithm_type_nTerminalExt), (u'cTerminalExt', _Algorithm_type_cTerminalExt), (u'tree-scope', _Algorithm_type_tree_scope), (u'coloring-scope', _Algorithm_type_coloring_scope), ]) Algorithm_type._ext = None #-----< Node-annotation >-----# Node_annotation = SEQ(name=u'Node-annotation', mode=MODE_TYPE) _Node_annotation_presentInChildCD = STR_VIS(name=u'presentInChildCD', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Node_annotation_note = STR_VIS(name=u'note', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Node_annotation._cont = ASN1Dict([ (u'presentInChildCD', _Node_annotation_presentInChildCD), (u'note', _Node_annotation_note), ]) Node_annotation._ext = None #-----< Cdd >-----# Cdd = SEQ(name=u'Cdd', mode=MODE_TYPE) _Cdd_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set'))) _Cdd_description = SET_OF(name=u'description', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-descr-set')), opt=True) _Cdd_seqannot = SEQ_OF(name=u'seqannot', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_seqannot__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Cdd_seqannot._cont = __Cdd_seqannot__item_ _Cdd_features = SEQ(name=u'features', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-annot-set')), opt=True) _Cdd_sequences = CHOICE(name=u'sequences', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry')), opt=True) _Cdd_profile_range = SEQ(name=u'profile-range', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval')), opt=True) _Cdd_trunc_master = SEQ(name=u'trunc-master', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq')), opt=True) _Cdd_posfreq = SEQ(name=u'posfreq', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Matrix')), opt=True) _Cdd_scoremat = SEQ(name=u'scoremat', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Matrix')), opt=True) _Cdd_distance = SEQ(name=u'distance', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Triangle')), opt=True) _Cdd_parent = CHOICE(name=u'parent', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id')), opt=True) _Cdd_children = SEQ_OF(name=u'children', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) _Cdd_siblings = SEQ_OF(name=u'siblings', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) _Cdd_neighbors = SEQ_OF(name=u'neighbors', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) _Cdd_pending = SEQ_OF(name=u'pending', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_pending__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Update-align'))) _Cdd_pending._cont = __Cdd_pending__item_ _Cdd_rejects = SEQ_OF(name=u'rejects', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_rejects__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Reject-id'))) _Cdd_rejects._cont = __Cdd_rejects__item_ _Cdd_master3d = SET_OF(name=u'master3d', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_master3d__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Cdd_master3d._cont = __Cdd_master3d__item_ _Cdd_alignannot = SEQ_OF(name=u'alignannot', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Align-annot-set')), opt=True) _Cdd_style_dictionary = SEQ(name=u'style-dictionary', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-dictionary')), opt=True) _Cdd_user_annotations = SEQ(name=u'user-annotations', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotations')), opt=True) _Cdd_ancestors = SEQ_OF(name=u'ancestors', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_ancestors__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Domain-parent'))) _Cdd_ancestors._cont = __Cdd_ancestors__item_ _Cdd_scoreparams = SEQ(name=u'scoreparams', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmWithParameters')), opt=True) _Cdd_seqtree = SEQ(name=u'seqtree', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Sequence-tree')), opt=True) Cdd._cont = ASN1Dict([ (u'name', _Cdd_name), (u'id', _Cdd_id), (u'description', _Cdd_description), (u'seqannot', _Cdd_seqannot), (u'features', _Cdd_features), (u'sequences', _Cdd_sequences), (u'profile-range', _Cdd_profile_range), (u'trunc-master', _Cdd_trunc_master), (u'posfreq', _Cdd_posfreq), (u'scoremat', _Cdd_scoremat), (u'distance', _Cdd_distance), (u'parent', _Cdd_parent), (u'children', _Cdd_children), (u'siblings', _Cdd_siblings), (u'neighbors', _Cdd_neighbors), (u'pending', _Cdd_pending), (u'rejects', _Cdd_rejects), (u'master3d', _Cdd_master3d), (u'alignannot', _Cdd_alignannot), (u'style-dictionary', _Cdd_style_dictionary), (u'user-annotations', _Cdd_user_annotations), (u'ancestors', _Cdd_ancestors), (u'scoreparams', _Cdd_scoreparams), (u'seqtree', _Cdd_seqtree), ]) Cdd._ext = None #-----< Cdd-set >-----# Cdd_set = SET_OF(name=u'Cdd-set', mode=MODE_TYPE) _Cdd_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd'))) Cdd_set._cont = _Cdd_set__item_ #-----< Cdd-Viewer-Rect >-----# Cdd_Viewer_Rect = SEQ(name=u'Cdd-Viewer-Rect', mode=MODE_TYPE) _Cdd_Viewer_Rect_top = INT(name=u'top', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_Viewer_Rect_left = INT(name=u'left', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_Viewer_Rect_width = INT(name=u'width', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_Viewer_Rect_height = INT(name=u'height', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Cdd_Viewer_Rect._cont = ASN1Dict([ (u'top', _Cdd_Viewer_Rect_top), (u'left', _Cdd_Viewer_Rect_left), (u'width', _Cdd_Viewer_Rect_width), (u'height', _Cdd_Viewer_Rect_height), ]) Cdd_Viewer_Rect._ext = None #-----< Cdd-Viewer >-----# Cdd_Viewer = SEQ(name=u'Cdd-Viewer', mode=MODE_TYPE) _Cdd_Viewer_ctrl = INT(name=u'ctrl', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_Viewer_ctrl._cont = ASN1Dict([(u'unassigned', 0), (u'cd-info', 1), (u'align-annot', 2), (u'seq-list', 3), (u'seq-tree', 4), (u'merge-preview', 5), (u'cross-hits', 6), (u'notes', 7), (u'tax-tree', 8), (u'dart', 9), (u'dart-selected-rows', 10), (u'other', 255)]) _Cdd_Viewer_rect = SEQ(name=u'rect', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-Viewer-Rect')), opt=True) _Cdd_Viewer_accessions = SEQ_OF(name=u'accessions', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cdd_Viewer_accessions__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Cdd_Viewer_accessions._cont = __Cdd_Viewer_accessions__item_ Cdd_Viewer._cont = ASN1Dict([ (u'ctrl', _Cdd_Viewer_ctrl), (u'rect', _Cdd_Viewer_rect), (u'accessions', _Cdd_Viewer_accessions), ]) Cdd_Viewer._ext = None #-----< Cdd-Script >-----# Cdd_Script = SEQ(name=u'Cdd-Script', mode=MODE_TYPE) _Cdd_Script_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdd_Script_type._cont = ASN1Dict([(u'unassigned', 0), (u'user-recorded', 1), (u'server-generated', 2), (u'other', 255)]) _Cdd_Script_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdd_Script_commands = STR_VIS(name=u'commands', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Cdd_Script._cont = ASN1Dict([ (u'type', _Cdd_Script_type), (u'name', _Cdd_Script_name), (u'commands', _Cdd_Script_commands), ]) Cdd_Script._ext = None #-----< Cdd-Project >-----# Cdd_Project = SEQ(name=u'Cdd-Project', mode=MODE_TYPE) _Cdd_Project_cds = SEQ_OF(name=u'cds', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cdd_Project_cds__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd'))) _Cdd_Project_cds._cont = __Cdd_Project_cds__item_ _Cdd_Project_cdcolor = SEQ_OF(name=u'cdcolor', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cdd_Project_cdcolor__item_ = INT(name='_item_', mode=MODE_TYPE) _Cdd_Project_cdcolor._cont = __Cdd_Project_cdcolor__item_ _Cdd_Project_viewers = SEQ_OF(name=u'viewers', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cdd_Project_viewers__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-Viewer'))) _Cdd_Project_viewers._cont = __Cdd_Project_viewers__item_ _Cdd_Project_log = STR_VIS(name=u'log', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cdd_Project_scripts = SEQ_OF(name=u'scripts', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_Project_scripts__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-Script'))) _Cdd_Project_scripts._cont = __Cdd_Project_scripts__item_ _Cdd_Project_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd-id-set')), opt=True) _Cdd_Project_rids = SEQ_OF(name=u'rids', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdd_Project_rids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Cdd_Project_rids._cont = __Cdd_Project_rids__item_ _Cdd_Project_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Cdd_Project_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Cdd_Project_project_id = INT(name=u'project-id', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cdd_Project._cont = ASN1Dict([ (u'cds', _Cdd_Project_cds), (u'cdcolor', _Cdd_Project_cdcolor), (u'viewers', _Cdd_Project_viewers), (u'log', _Cdd_Project_log), (u'scripts', _Cdd_Project_scripts), (u'id', _Cdd_Project_id), (u'rids', _Cdd_Project_rids), (u'create-date', _Cdd_Project_create_date), (u'update-date', _Cdd_Project_update_date), (u'project-id', _Cdd_Project_project_id), ]) Cdd_Project._ext = None _all_ = [ _Cdd_org_ref_reference, _Cdd_org_ref_active, _Cdd_org_ref_parent_tax_id, _Cdd_org_ref_rank, Cdd_org_ref, _Cdd_org_ref_set__item_, Cdd_org_ref_set, _Cdd_pref_node_descr_create_date, _Cdd_pref_node_descr_description, Cdd_pref_node_descr, _Cdd_pref_node_descr_set__item_, Cdd_pref_node_descr_set, _Cdd_pref_nodes_preferred_nodes, _Cdd_pref_nodes_model_organisms, _Cdd_pref_nodes_optional_nodes, _Cdd_pref_nodes_description, Cdd_pref_nodes, _Global_id_accession, _Global_id_release, _Global_id_version, _Global_id_database, Global_id, _Cdd_id_uid, _Cdd_id_gid, Cdd_id, _Cdd_id_set__item_, Cdd_id_set, _Cdd_repeat_count, _Cdd_repeat_location, _Cdd_repeat_avglen, Cdd_repeat, _Cdd_book_ref_bookname, _Cdd_book_ref_textelement, _Cdd_book_ref_elementid, _Cdd_book_ref_subelementid, _Cdd_book_ref_celementid, _Cdd_book_ref_csubelementid, Cdd_book_ref, _Cdd_descr_othername, _Cdd_descr_category, _Cdd_descr_comment, _Cdd_descr_reference, _Cdd_descr_create_date, _Cdd_descr_tax_source, _Cdd_descr_source, _Cdd_descr_status, _Cdd_descr_update_date, __Cdd_descr_scrapbook__item_, _Cdd_descr_scrapbook, _Cdd_descr_source_id, _Cdd_descr_repeats, _Cdd_descr_old_root, _Cdd_descr_curation_status, _Cdd_descr_readonly_status, _Cdd_descr_book_ref, _Cdd_descr_attribution, _Cdd_descr_title, Cdd_descr, _Cdd_descr_set__item_, Cdd_descr_set, _Cdd_tree_name, _Cdd_tree_id, _Cdd_tree_description, _Cdd_tree_parent, _Cdd_tree_children, _Cdd_tree_siblings, _Cdd_tree_neighbors, Cdd_tree, _Cdd_tree_set__item_, Cdd_tree_set, _Matrix_ncolumns, _Matrix_nrows, __Matrix_row_labels__item_, _Matrix_row_labels, _Matrix_scale_factor, __Matrix_columns__item_, _Matrix_columns, Matrix, _Triangle_nelements, _Triangle_scores, __Triangle_div_ranks__item_, _Triangle_div_ranks, Triangle, _Update_comment_comment, _Update_comment_addthis, _Update_comment_replaces, _Update_comment_reject_loc, _Update_comment_reference, Update_comment, __Update_align_description__item_, _Update_align_description, _Update_align_seqannot, _Update_align_type, Update_align, __Reject_id_description__item_, _Reject_id_description, __Reject_id_ids__item_, _Reject_id_ids, Reject_id, _Feature_evidence_comment, _Feature_evidence_reference, _Feature_evidence_bsannot, _Feature_evidence_seqfeat, _Feature_evidence_book_ref, Feature_evidence, _Align_annot_location, _Align_annot_description, __Align_annot_evidence__item_, _Align_annot_evidence, _Align_annot_type, __Align_annot_aliases__item_, _Align_annot_aliases, _Align_annot_motif, _Align_annot_motifuse, Align_annot, _Align_annot_set__item_, Align_annot_set, _Domain_parent_parent_type, _Domain_parent_parentid, _Domain_parent_seqannot, Domain_parent, _Sequence_tree_cdAccession, _Sequence_tree_algorithm, _Sequence_tree_isAnnotated, _Sequence_tree_root, Sequence_tree, _SeqTree_node_isAnnotated, _SeqTree_node_name, _SeqTree_node_distance, ___SeqTree_node_children_children__item_, __SeqTree_node_children_children, ___SeqTree_node_children_footprint_seqRange, ___SeqTree_node_children_footprint_rowId, __SeqTree_node_children_footprint, _SeqTree_node_children, _SeqTree_node_annotation, SeqTree_node, _Algorithm_type_scoring_Scheme, _Algorithm_type_clustering_Method, _Algorithm_type_score_Matrix, _Algorithm_type_gapOpen, _Algorithm_type_gapExtend, _Algorithm_type_gapScaleFactor, _Algorithm_type_nTerminalExt, _Algorithm_type_cTerminalExt, _Algorithm_type_tree_scope, _Algorithm_type_coloring_scope, Algorithm_type, _Node_annotation_presentInChildCD, _Node_annotation_note, Node_annotation, _Cdd_name, _Cdd_id, _Cdd_description, __Cdd_seqannot__item_, _Cdd_seqannot, _Cdd_features, _Cdd_sequences, _Cdd_profile_range, _Cdd_trunc_master, _Cdd_posfreq, _Cdd_scoremat, _Cdd_distance, _Cdd_parent, _Cdd_children, _Cdd_siblings, _Cdd_neighbors, __Cdd_pending__item_, _Cdd_pending, __Cdd_rejects__item_, _Cdd_rejects, __Cdd_master3d__item_, _Cdd_master3d, _Cdd_alignannot, _Cdd_style_dictionary, _Cdd_user_annotations, __Cdd_ancestors__item_, _Cdd_ancestors, _Cdd_scoreparams, _Cdd_seqtree, Cdd, _Cdd_set__item_, Cdd_set, _Cdd_Viewer_Rect_top, _Cdd_Viewer_Rect_left, _Cdd_Viewer_Rect_width, _Cdd_Viewer_Rect_height, Cdd_Viewer_Rect, _Cdd_Viewer_ctrl, _Cdd_Viewer_rect, __Cdd_Viewer_accessions__item_, _Cdd_Viewer_accessions, Cdd_Viewer, _Cdd_Script_type, _Cdd_Script_name, _Cdd_Script_commands, Cdd_Script, __Cdd_Project_cds__item_, _Cdd_Project_cds, __Cdd_Project_cdcolor__item_, _Cdd_Project_cdcolor, __Cdd_Project_viewers__item_, _Cdd_Project_viewers, _Cdd_Project_log, __Cdd_Project_scripts__item_, _Cdd_Project_scripts, _Cdd_Project_id, __Cdd_Project_rids__item_, _Cdd_Project_rids, _Cdd_Project_create_date, _Cdd_Project_update_date, _Cdd_Project_project_id, Cdd_Project, ] class NCBI_Cn3d: _name_ = u'NCBI-Cn3d' _oid_ = [] _obj_ = [ u'Cn3d-backbone-type', u'Cn3d-drawing-style', u'Cn3d-color-scheme', u'Cn3d-color', u'Cn3d-backbone-style', u'Cn3d-general-style', u'Cn3d-backbone-label-style', u'Cn3d-style-settings', u'Cn3d-style-settings-set', u'Cn3d-style-table-id', u'Cn3d-style-table-item', u'Cn3d-style-dictionary', u'Cn3d-residue-range', u'Cn3d-molecule-location', u'Cn3d-object-location', u'Cn3d-user-annotation', u'Cn3d-GL-matrix', u'Cn3d-vector', u'Cn3d-view-settings', u'Cn3d-user-annotations', ] _type_ = [ u'Cn3d-backbone-type', u'Cn3d-drawing-style', u'Cn3d-color-scheme', u'Cn3d-color', u'Cn3d-backbone-style', u'Cn3d-general-style', u'Cn3d-backbone-label-style', u'Cn3d-style-settings', u'Cn3d-style-settings-set', u'Cn3d-style-table-id', u'Cn3d-style-table-item', u'Cn3d-style-dictionary', u'Cn3d-residue-range', u'Cn3d-molecule-location', u'Cn3d-object-location', u'Cn3d-user-annotation', u'Cn3d-GL-matrix', u'Cn3d-vector', u'Cn3d-view-settings', u'Cn3d-user-annotations', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Cn3d-backbone-type >-----# Cn3d_backbone_type = ENUM(name=u'Cn3d-backbone-type', mode=MODE_TYPE) Cn3d_backbone_type._cont = ASN1Dict([(u'off', 1), (u'trace', 2), (u'partial', 3), (u'complete', 4)]) Cn3d_backbone_type._ext = None #-----< Cn3d-drawing-style >-----# Cn3d_drawing_style = ENUM(name=u'Cn3d-drawing-style', mode=MODE_TYPE) Cn3d_drawing_style._cont = ASN1Dict([(u'wire', 1), (u'tubes', 2), (u'ball-and-stick', 3), (u'space-fill', 4), (u'wire-worm', 5), (u'tube-worm', 6), (u'with-arrows', 7), (u'without-arrows', 8)]) Cn3d_drawing_style._ext = None #-----< Cn3d-color-scheme >-----# Cn3d_color_scheme = ENUM(name=u'Cn3d-color-scheme', mode=MODE_TYPE) Cn3d_color_scheme._cont = ASN1Dict([(u'element', 1), (u'object', 2), (u'molecule', 3), (u'domain', 4), (u'secondary-structure', 5), (u'user-select', 6), (u'aligned', 7), (u'identity', 8), (u'variety', 9), (u'weighted-variety', 10), (u'information-content', 11), (u'fit', 12), (u'temperature', 13), (u'hydrophobicity', 14), (u'charge', 15), (u'rainbow', 16), (u'block-fit', 17), (u'block-z-fit', 18), (u'block-row-fit', 19), (u'residue', 20)]) Cn3d_color_scheme._ext = None #-----< Cn3d-color >-----# Cn3d_color = SEQ(name=u'Cn3d-color', mode=MODE_TYPE) _Cn3d_color_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=255) _Cn3d_color_red = INT(name=u'red', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_color_green = INT(name=u'green', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_color_blue = INT(name=u'blue', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_color_alpha = INT(name=u'alpha', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=255) Cn3d_color._cont = ASN1Dict([ (u'scale-factor', _Cn3d_color_scale_factor), (u'red', _Cn3d_color_red), (u'green', _Cn3d_color_green), (u'blue', _Cn3d_color_blue), (u'alpha', _Cn3d_color_alpha), ]) Cn3d_color._ext = None #-----< Cn3d-backbone-style >-----# Cn3d_backbone_style = SEQ(name=u'Cn3d-backbone-style', mode=MODE_TYPE) _Cn3d_backbone_style_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-backbone-type'))) _Cn3d_backbone_style_style = ENUM(name=u'style', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-drawing-style'))) _Cn3d_backbone_style_color_scheme = ENUM(name=u'color-scheme', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-color-scheme'))) _Cn3d_backbone_style_user_color = SEQ(name=u'user-color', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-color'))) Cn3d_backbone_style._cont = ASN1Dict([ (u'type', _Cn3d_backbone_style_type), (u'style', _Cn3d_backbone_style_style), (u'color-scheme', _Cn3d_backbone_style_color_scheme), (u'user-color', _Cn3d_backbone_style_user_color), ]) Cn3d_backbone_style._ext = None #-----< Cn3d-general-style >-----# Cn3d_general_style = SEQ(name=u'Cn3d-general-style', mode=MODE_TYPE) _Cn3d_general_style_is_on = BOOL(name=u'is-on', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_general_style_style = ENUM(name=u'style', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-drawing-style'))) _Cn3d_general_style_color_scheme = ENUM(name=u'color-scheme', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-color-scheme'))) _Cn3d_general_style_user_color = SEQ(name=u'user-color', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-color'))) Cn3d_general_style._cont = ASN1Dict([ (u'is-on', _Cn3d_general_style_is_on), (u'style', _Cn3d_general_style_style), (u'color-scheme', _Cn3d_general_style_color_scheme), (u'user-color', _Cn3d_general_style_user_color), ]) Cn3d_general_style._ext = None #-----< Cn3d-backbone-label-style >-----# Cn3d_backbone_label_style = SEQ(name=u'Cn3d-backbone-label-style', mode=MODE_TYPE) _Cn3d_backbone_label_style_spacing = INT(name=u'spacing', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_backbone_label_style_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_backbone_label_style_type._cont = ASN1Dict([(u'one-letter', 1), (u'three-letter', 2)]) _Cn3d_backbone_label_style_type._ext = None _Cn3d_backbone_label_style_number = ENUM(name=u'number', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_backbone_label_style_number._cont = ASN1Dict([(u'none', 0), (u'sequential', 1), (u'pdb', 2)]) _Cn3d_backbone_label_style_number._ext = None _Cn3d_backbone_label_style_termini = BOOL(name=u'termini', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_backbone_label_style_white = BOOL(name=u'white', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Cn3d_backbone_label_style._cont = ASN1Dict([ (u'spacing', _Cn3d_backbone_label_style_spacing), (u'type', _Cn3d_backbone_label_style_type), (u'number', _Cn3d_backbone_label_style_number), (u'termini', _Cn3d_backbone_label_style_termini), (u'white', _Cn3d_backbone_label_style_white), ]) Cn3d_backbone_label_style._ext = None #-----< Cn3d-style-settings >-----# Cn3d_style_settings = SEQ(name=u'Cn3d-style-settings', mode=MODE_TYPE) _Cn3d_style_settings_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cn3d_style_settings_protein_backbone = SEQ(name=u'protein-backbone', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-backbone-style'))) _Cn3d_style_settings_nucleotide_backbone = SEQ(name=u'nucleotide-backbone', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-backbone-style'))) _Cn3d_style_settings_protein_sidechains = SEQ(name=u'protein-sidechains', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_nucleotide_sidechains = SEQ(name=u'nucleotide-sidechains', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_heterogens = SEQ(name=u'heterogens', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_solvents = SEQ(name=u'solvents', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_connections = SEQ(name=u'connections', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_helix_objects = SEQ(name=u'helix-objects', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_strand_objects = SEQ(name=u'strand-objects', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-general-style'))) _Cn3d_style_settings_virtual_disulfides_on = BOOL(name=u'virtual-disulfides-on', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_virtual_disulfide_color = SEQ(name=u'virtual-disulfide-color', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-color'))) _Cn3d_style_settings_hydrogens_on = BOOL(name=u'hydrogens-on', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_background_color = SEQ(name=u'background-color', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-color'))) _Cn3d_style_settings_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_space_fill_proportion = INT(name=u'space-fill-proportion', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_ball_radius = INT(name=u'ball-radius', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_stick_radius = INT(name=u'stick-radius', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_tube_radius = INT(name=u'tube-radius', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_tube_worm_radius = INT(name=u'tube-worm-radius', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_helix_radius = INT(name=u'helix-radius', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_strand_width = INT(name=u'strand-width', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_strand_thickness = INT(name=u'strand-thickness', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_style_settings_protein_labels = SEQ(name=u'protein-labels', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-backbone-label-style')), opt=True) _Cn3d_style_settings_nucleotide_labels = SEQ(name=u'nucleotide-labels', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-backbone-label-style')), opt=True) _Cn3d_style_settings_ion_labels = BOOL(name=u'ion-labels', mode=MODE_TYPE, tag=(25, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cn3d_style_settings._cont = ASN1Dict([ (u'name', _Cn3d_style_settings_name), (u'protein-backbone', _Cn3d_style_settings_protein_backbone), (u'nucleotide-backbone', _Cn3d_style_settings_nucleotide_backbone), (u'protein-sidechains', _Cn3d_style_settings_protein_sidechains), (u'nucleotide-sidechains', _Cn3d_style_settings_nucleotide_sidechains), (u'heterogens', _Cn3d_style_settings_heterogens), (u'solvents', _Cn3d_style_settings_solvents), (u'connections', _Cn3d_style_settings_connections), (u'helix-objects', _Cn3d_style_settings_helix_objects), (u'strand-objects', _Cn3d_style_settings_strand_objects), (u'virtual-disulfides-on', _Cn3d_style_settings_virtual_disulfides_on), (u'virtual-disulfide-color', _Cn3d_style_settings_virtual_disulfide_color), (u'hydrogens-on', _Cn3d_style_settings_hydrogens_on), (u'background-color', _Cn3d_style_settings_background_color), (u'scale-factor', _Cn3d_style_settings_scale_factor), (u'space-fill-proportion', _Cn3d_style_settings_space_fill_proportion), (u'ball-radius', _Cn3d_style_settings_ball_radius), (u'stick-radius', _Cn3d_style_settings_stick_radius), (u'tube-radius', _Cn3d_style_settings_tube_radius), (u'tube-worm-radius', _Cn3d_style_settings_tube_worm_radius), (u'helix-radius', _Cn3d_style_settings_helix_radius), (u'strand-width', _Cn3d_style_settings_strand_width), (u'strand-thickness', _Cn3d_style_settings_strand_thickness), (u'protein-labels', _Cn3d_style_settings_protein_labels), (u'nucleotide-labels', _Cn3d_style_settings_nucleotide_labels), (u'ion-labels', _Cn3d_style_settings_ion_labels), ]) Cn3d_style_settings._ext = None #-----< Cn3d-style-settings-set >-----# Cn3d_style_settings_set = SET_OF(name=u'Cn3d-style-settings-set', mode=MODE_TYPE) _Cn3d_style_settings_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-settings'))) Cn3d_style_settings_set._cont = _Cn3d_style_settings_set__item_ #-----< Cn3d-style-table-id >-----# Cn3d_style_table_id = INT(name=u'Cn3d-style-table-id', mode=MODE_TYPE) #-----< Cn3d-style-table-item >-----# Cn3d_style_table_item = SEQ(name=u'Cn3d-style-table-item', mode=MODE_TYPE) _Cn3d_style_table_item_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-table-id'))) _Cn3d_style_table_item_style = SEQ(name=u'style', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-settings'))) Cn3d_style_table_item._cont = ASN1Dict([ (u'id', _Cn3d_style_table_item_id), (u'style', _Cn3d_style_table_item_style), ]) Cn3d_style_table_item._ext = None #-----< Cn3d-style-dictionary >-----# Cn3d_style_dictionary = SEQ(name=u'Cn3d-style-dictionary', mode=MODE_TYPE) _Cn3d_style_dictionary_global_style = SEQ(name=u'global-style', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-settings'))) _Cn3d_style_dictionary_style_table = SEQ_OF(name=u'style-table', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cn3d_style_dictionary_style_table__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-table-item'))) _Cn3d_style_dictionary_style_table._cont = __Cn3d_style_dictionary_style_table__item_ Cn3d_style_dictionary._cont = ASN1Dict([ (u'global-style', _Cn3d_style_dictionary_global_style), (u'style-table', _Cn3d_style_dictionary_style_table), ]) Cn3d_style_dictionary._ext = None #-----< Cn3d-residue-range >-----# Cn3d_residue_range = SEQ(name=u'Cn3d-residue-range', mode=MODE_TYPE) _Cn3d_residue_range_from_ = INT(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) _Cn3d_residue_range_to = INT(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) Cn3d_residue_range._cont = ASN1Dict([ (u'from', _Cn3d_residue_range_from_), (u'to', _Cn3d_residue_range_to), ]) Cn3d_residue_range._ext = None #-----< Cn3d-molecule-location >-----# Cn3d_molecule_location = SEQ(name=u'Cn3d-molecule-location', mode=MODE_TYPE) _Cn3d_molecule_location_molecule_id = INT(name=u'molecule-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Cn3d_molecule_location_residues = SEQ_OF(name=u'residues', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cn3d_molecule_location_residues__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-residue-range'))) _Cn3d_molecule_location_residues._cont = __Cn3d_molecule_location_residues__item_ Cn3d_molecule_location._cont = ASN1Dict([ (u'molecule-id', _Cn3d_molecule_location_molecule_id), (u'residues', _Cn3d_molecule_location_residues), ]) Cn3d_molecule_location._ext = None #-----< Cn3d-object-location >-----# Cn3d_object_location = SEQ(name=u'Cn3d-object-location', mode=MODE_TYPE) _Cn3d_object_location_structure_id = CHOICE(name=u'structure-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Cn3d_object_location_residues = SEQ_OF(name=u'residues', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cn3d_object_location_residues__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-molecule-location'))) _Cn3d_object_location_residues._cont = __Cn3d_object_location_residues__item_ Cn3d_object_location._cont = ASN1Dict([ (u'structure-id', _Cn3d_object_location_structure_id), (u'residues', _Cn3d_object_location_residues), ]) Cn3d_object_location._ext = None #-----< Cn3d-user-annotation >-----# Cn3d_user_annotation = SEQ(name=u'Cn3d-user-annotation', mode=MODE_TYPE) _Cn3d_user_annotation_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Cn3d_user_annotation_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cn3d_user_annotation_style_id = INT(name=u'style-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-table-id'))) _Cn3d_user_annotation_residues = SEQ_OF(name=u'residues', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Cn3d_user_annotation_residues__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-object-location'))) _Cn3d_user_annotation_residues._cont = __Cn3d_user_annotation_residues__item_ _Cn3d_user_annotation_is_on = BOOL(name=u'is-on', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Cn3d_user_annotation._cont = ASN1Dict([ (u'name', _Cn3d_user_annotation_name), (u'description', _Cn3d_user_annotation_description), (u'style-id', _Cn3d_user_annotation_style_id), (u'residues', _Cn3d_user_annotation_residues), (u'is-on', _Cn3d_user_annotation_is_on), ]) Cn3d_user_annotation._ext = None #-----< Cn3d-GL-matrix >-----# Cn3d_GL_matrix = SEQ(name=u'Cn3d-GL-matrix', mode=MODE_TYPE) _Cn3d_GL_matrix_m0 = REAL(name=u'm0', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m1 = REAL(name=u'm1', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m2 = REAL(name=u'm2', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m3 = REAL(name=u'm3', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m4 = REAL(name=u'm4', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m5 = REAL(name=u'm5', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m6 = REAL(name=u'm6', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m7 = REAL(name=u'm7', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m8 = REAL(name=u'm8', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m9 = REAL(name=u'm9', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m10 = REAL(name=u'm10', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m11 = REAL(name=u'm11', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m12 = REAL(name=u'm12', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m13 = REAL(name=u'm13', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m14 = REAL(name=u'm14', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_GL_matrix_m15 = REAL(name=u'm15', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) Cn3d_GL_matrix._cont = ASN1Dict([ (u'm0', _Cn3d_GL_matrix_m0), (u'm1', _Cn3d_GL_matrix_m1), (u'm2', _Cn3d_GL_matrix_m2), (u'm3', _Cn3d_GL_matrix_m3), (u'm4', _Cn3d_GL_matrix_m4), (u'm5', _Cn3d_GL_matrix_m5), (u'm6', _Cn3d_GL_matrix_m6), (u'm7', _Cn3d_GL_matrix_m7), (u'm8', _Cn3d_GL_matrix_m8), (u'm9', _Cn3d_GL_matrix_m9), (u'm10', _Cn3d_GL_matrix_m10), (u'm11', _Cn3d_GL_matrix_m11), (u'm12', _Cn3d_GL_matrix_m12), (u'm13', _Cn3d_GL_matrix_m13), (u'm14', _Cn3d_GL_matrix_m14), (u'm15', _Cn3d_GL_matrix_m15), ]) Cn3d_GL_matrix._ext = None #-----< Cn3d-vector >-----# Cn3d_vector = SEQ(name=u'Cn3d-vector', mode=MODE_TYPE) _Cn3d_vector_x = REAL(name=u'x', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_vector_y = REAL(name=u'y', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_vector_z = REAL(name=u'z', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) Cn3d_vector._cont = ASN1Dict([ (u'x', _Cn3d_vector_x), (u'y', _Cn3d_vector_y), (u'z', _Cn3d_vector_z), ]) Cn3d_vector._ext = None #-----< Cn3d-view-settings >-----# Cn3d_view_settings = SEQ(name=u'Cn3d-view-settings', mode=MODE_TYPE) _Cn3d_view_settings_camera_distance = REAL(name=u'camera-distance', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_view_settings_camera_angle_rad = REAL(name=u'camera-angle-rad', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_view_settings_camera_look_at_X = REAL(name=u'camera-look-at-X', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_view_settings_camera_look_at_Y = REAL(name=u'camera-look-at-Y', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_view_settings_camera_clip_near = REAL(name=u'camera-clip-near', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_view_settings_camera_clip_far = REAL(name=u'camera-clip-far', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Cn3d_view_settings_matrix = SEQ(name=u'matrix', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-GL-matrix'))) _Cn3d_view_settings_rotation_center = SEQ(name=u'rotation-center', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-vector'))) Cn3d_view_settings._cont = ASN1Dict([ (u'camera-distance', _Cn3d_view_settings_camera_distance), (u'camera-angle-rad', _Cn3d_view_settings_camera_angle_rad), (u'camera-look-at-X', _Cn3d_view_settings_camera_look_at_X), (u'camera-look-at-Y', _Cn3d_view_settings_camera_look_at_Y), (u'camera-clip-near', _Cn3d_view_settings_camera_clip_near), (u'camera-clip-far', _Cn3d_view_settings_camera_clip_far), (u'matrix', _Cn3d_view_settings_matrix), (u'rotation-center', _Cn3d_view_settings_rotation_center), ]) Cn3d_view_settings._ext = None #-----< Cn3d-user-annotations >-----# Cn3d_user_annotations = SEQ(name=u'Cn3d-user-annotations', mode=MODE_TYPE) _Cn3d_user_annotations_annotations = SEQ_OF(name=u'annotations', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cn3d_user_annotations_annotations__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotation'))) _Cn3d_user_annotations_annotations._cont = __Cn3d_user_annotations_annotations__item_ _Cn3d_user_annotations_view = SEQ(name=u'view', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-view-settings')), opt=True) Cn3d_user_annotations._cont = ASN1Dict([ (u'annotations', _Cn3d_user_annotations_annotations), (u'view', _Cn3d_user_annotations_view), ]) Cn3d_user_annotations._ext = None _all_ = [ Cn3d_backbone_type, Cn3d_drawing_style, Cn3d_color_scheme, _Cn3d_color_scale_factor, _Cn3d_color_red, _Cn3d_color_green, _Cn3d_color_blue, _Cn3d_color_alpha, Cn3d_color, _Cn3d_backbone_style_type, _Cn3d_backbone_style_style, _Cn3d_backbone_style_color_scheme, _Cn3d_backbone_style_user_color, Cn3d_backbone_style, _Cn3d_general_style_is_on, _Cn3d_general_style_style, _Cn3d_general_style_color_scheme, _Cn3d_general_style_user_color, Cn3d_general_style, _Cn3d_backbone_label_style_spacing, _Cn3d_backbone_label_style_type, _Cn3d_backbone_label_style_number, _Cn3d_backbone_label_style_termini, _Cn3d_backbone_label_style_white, Cn3d_backbone_label_style, _Cn3d_style_settings_name, _Cn3d_style_settings_protein_backbone, _Cn3d_style_settings_nucleotide_backbone, _Cn3d_style_settings_protein_sidechains, _Cn3d_style_settings_nucleotide_sidechains, _Cn3d_style_settings_heterogens, _Cn3d_style_settings_solvents, _Cn3d_style_settings_connections, _Cn3d_style_settings_helix_objects, _Cn3d_style_settings_strand_objects, _Cn3d_style_settings_virtual_disulfides_on, _Cn3d_style_settings_virtual_disulfide_color, _Cn3d_style_settings_hydrogens_on, _Cn3d_style_settings_background_color, _Cn3d_style_settings_scale_factor, _Cn3d_style_settings_space_fill_proportion, _Cn3d_style_settings_ball_radius, _Cn3d_style_settings_stick_radius, _Cn3d_style_settings_tube_radius, _Cn3d_style_settings_tube_worm_radius, _Cn3d_style_settings_helix_radius, _Cn3d_style_settings_strand_width, _Cn3d_style_settings_strand_thickness, _Cn3d_style_settings_protein_labels, _Cn3d_style_settings_nucleotide_labels, _Cn3d_style_settings_ion_labels, Cn3d_style_settings, _Cn3d_style_settings_set__item_, Cn3d_style_settings_set, Cn3d_style_table_id, _Cn3d_style_table_item_id, _Cn3d_style_table_item_style, Cn3d_style_table_item, _Cn3d_style_dictionary_global_style, __Cn3d_style_dictionary_style_table__item_, _Cn3d_style_dictionary_style_table, Cn3d_style_dictionary, _Cn3d_residue_range_from_, _Cn3d_residue_range_to, Cn3d_residue_range, _Cn3d_molecule_location_molecule_id, __Cn3d_molecule_location_residues__item_, _Cn3d_molecule_location_residues, Cn3d_molecule_location, _Cn3d_object_location_structure_id, __Cn3d_object_location_residues__item_, _Cn3d_object_location_residues, Cn3d_object_location, _Cn3d_user_annotation_name, _Cn3d_user_annotation_description, _Cn3d_user_annotation_style_id, __Cn3d_user_annotation_residues__item_, _Cn3d_user_annotation_residues, _Cn3d_user_annotation_is_on, Cn3d_user_annotation, _Cn3d_GL_matrix_m0, _Cn3d_GL_matrix_m1, _Cn3d_GL_matrix_m2, _Cn3d_GL_matrix_m3, _Cn3d_GL_matrix_m4, _Cn3d_GL_matrix_m5, _Cn3d_GL_matrix_m6, _Cn3d_GL_matrix_m7, _Cn3d_GL_matrix_m8, _Cn3d_GL_matrix_m9, _Cn3d_GL_matrix_m10, _Cn3d_GL_matrix_m11, _Cn3d_GL_matrix_m12, _Cn3d_GL_matrix_m13, _Cn3d_GL_matrix_m14, _Cn3d_GL_matrix_m15, Cn3d_GL_matrix, _Cn3d_vector_x, _Cn3d_vector_y, _Cn3d_vector_z, Cn3d_vector, _Cn3d_view_settings_camera_distance, _Cn3d_view_settings_camera_angle_rad, _Cn3d_view_settings_camera_look_at_X, _Cn3d_view_settings_camera_look_at_Y, _Cn3d_view_settings_camera_clip_near, _Cn3d_view_settings_camera_clip_far, _Cn3d_view_settings_matrix, _Cn3d_view_settings_rotation_center, Cn3d_view_settings, __Cn3d_user_annotations_annotations__item_, _Cn3d_user_annotations_annotations, _Cn3d_user_annotations_view, Cn3d_user_annotations, ] class Docsum_3_4: _name_ = u'Docsum-3-4' _oid_ = [] _obj_ = [ u'Assay', u'Assembly', u'BaseURL', u'Component', u'ExchangeSet', u'FxnSet', u'MapLoc', u'PrimarySequence', u'Rs', u'RsLinkout', u'RsStruct', u'Ss', ] _type_ = [ u'Assay', u'Assembly', u'BaseURL', u'Component', u'ExchangeSet', u'FxnSet', u'MapLoc', u'PrimarySequence', u'Rs', u'RsLinkout', u'RsStruct', u'Ss', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Assay >-----# Assay = SEQ(name=u'Assay', mode=MODE_TYPE) _Assay_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assay_attlist_handle = STR_VIS(name=u'handle', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_batch = STR_VIS(name=u'batch', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_batchId = INT(name=u'batchId', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_batchType = ENUM(name=u'batchType', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_batchType._cont = ASN1Dict([(u'snpassay', 1), (u'validation', 2), (u'doublehit', 3)]) __Assay_attlist_batchType._ext = None __Assay_attlist_molType = ENUM(name=u'molType', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_molType._cont = ASN1Dict([(u'genomic', 1), (u'cDNA', 2), (u'mito', 3), (u'chloro', 4)]) __Assay_attlist_molType._ext = None __Assay_attlist_sampleSize = INT(name=u'sampleSize', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_population = STR_VIS(name=u'population', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_attlist_linkoutUrl = STR_VIS(name=u'linkoutUrl', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Assay_attlist._cont = ASN1Dict([ (u'handle', __Assay_attlist_handle), (u'batch', __Assay_attlist_batch), (u'batchId', __Assay_attlist_batchId), (u'batchType', __Assay_attlist_batchType), (u'molType', __Assay_attlist_molType), (u'sampleSize', __Assay_attlist_sampleSize), (u'population', __Assay_attlist_population), (u'linkoutUrl', __Assay_attlist_linkoutUrl), ]) _Assay_attlist._ext = None _Assay_method = SEQ(name=u'method', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assay_method_eMethod = SEQ(name=u'eMethod', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Assay_method_eMethod_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Assay_method_eMethod_attlist_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Assay_method_eMethod_attlist_id = STR_VIS(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Assay_method_eMethod_attlist._cont = ASN1Dict([ (u'name', ____Assay_method_eMethod_attlist_name), (u'id', ____Assay_method_eMethod_attlist_id), ]) ___Assay_method_eMethod_attlist._ext = None ___Assay_method_eMethod_exception = STR_VIS(name=u'exception', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assay_method_eMethod._cont = ASN1Dict([ (u'attlist', ___Assay_method_eMethod_attlist), (u'exception', ___Assay_method_eMethod_exception), ]) __Assay_method_eMethod._ext = None _Assay_method._cont = ASN1Dict([ (u'eMethod', __Assay_method_eMethod), ]) _Assay_method._ext = None _Assay_taxonomy = SEQ(name=u'taxonomy', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assay_taxonomy_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Assay_taxonomy_attlist_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Assay_taxonomy_attlist_organism = STR_VIS(name=u'organism', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_taxonomy_attlist._cont = ASN1Dict([ (u'id', ___Assay_taxonomy_attlist_id), (u'organism', ___Assay_taxonomy_attlist_organism), ]) __Assay_taxonomy_attlist._ext = None __Assay_taxonomy_taxonomy = NULL(name=u'taxonomy', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Assay_taxonomy._cont = ASN1Dict([ (u'attlist', __Assay_taxonomy_attlist), (u'taxonomy', __Assay_taxonomy_taxonomy), ]) _Assay_taxonomy._ext = None _Assay_strains = SEQ_OF(name=u'strains', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_strains__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Assay_strains._cont = __Assay_strains__item_ _Assay_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Assay_citation = SEQ_OF(name=u'citation', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assay_citation__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Assay_citation._cont = __Assay_citation__item_ Assay._cont = ASN1Dict([ (u'attlist', _Assay_attlist), (u'method', _Assay_method), (u'taxonomy', _Assay_taxonomy), (u'strains', _Assay_strains), (u'comment', _Assay_comment), (u'citation', _Assay_citation), ]) Assay._ext = None #-----< Assembly >-----# Assembly = SEQ(name=u'Assembly', mode=MODE_TYPE) _Assembly_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assembly_attlist_dbSnpBuild = INT(name=u'dbSnpBuild', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assembly_attlist_genomeBuild = STR_VIS(name=u'genomeBuild', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assembly_attlist_groupLabel = STR_VIS(name=u'groupLabel', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assembly_attlist_assemblySource = STR_VIS(name=u'assemblySource', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assembly_attlist_current = BOOL(name=u'current', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assembly_attlist_reference = BOOL(name=u'reference', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Assembly_attlist._cont = ASN1Dict([ (u'dbSnpBuild', __Assembly_attlist_dbSnpBuild), (u'genomeBuild', __Assembly_attlist_genomeBuild), (u'groupLabel', __Assembly_attlist_groupLabel), (u'assemblySource', __Assembly_attlist_assemblySource), (u'current', __Assembly_attlist_current), (u'reference', __Assembly_attlist_reference), ]) _Assembly_attlist._ext = None _Assembly_component = SEQ_OF(name=u'component', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assembly_component__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'Component'))) _Assembly_component._cont = __Assembly_component__item_ _Assembly_snpStat = SEQ(name=u'snpStat', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Assembly_snpStat_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Assembly_snpStat_attlist_mapWeight = ENUM(name=u'mapWeight', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Assembly_snpStat_attlist_mapWeight._cont = ASN1Dict([(u'unmapped', 1), (u'unique-in-contig', 2), (u'two-hits-in-contig', 3), (u'less-10-hits', 4), (u'multiple-hits', 5)]) ___Assembly_snpStat_attlist_mapWeight._ext = None ___Assembly_snpStat_attlist_chromCount = INT(name=u'chromCount', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Assembly_snpStat_attlist_placedContigCount = INT(name=u'placedContigCount', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Assembly_snpStat_attlist_unplacedContigCount = INT(name=u'unplacedContigCount', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Assembly_snpStat_attlist_seqlocCount = INT(name=u'seqlocCount', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Assembly_snpStat_attlist_hapCount = INT(name=u'hapCount', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Assembly_snpStat_attlist._cont = ASN1Dict([ (u'mapWeight', ___Assembly_snpStat_attlist_mapWeight), (u'chromCount', ___Assembly_snpStat_attlist_chromCount), (u'placedContigCount', ___Assembly_snpStat_attlist_placedContigCount), (u'unplacedContigCount', ___Assembly_snpStat_attlist_unplacedContigCount), (u'seqlocCount', ___Assembly_snpStat_attlist_seqlocCount), (u'hapCount', ___Assembly_snpStat_attlist_hapCount), ]) __Assembly_snpStat_attlist._ext = None __Assembly_snpStat_snpStat = NULL(name=u'snpStat', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Assembly_snpStat._cont = ASN1Dict([ (u'attlist', __Assembly_snpStat_attlist), (u'snpStat', __Assembly_snpStat_snpStat), ]) _Assembly_snpStat._ext = None Assembly._cont = ASN1Dict([ (u'attlist', _Assembly_attlist), (u'component', _Assembly_component), (u'snpStat', _Assembly_snpStat), ]) Assembly._ext = None #-----< BaseURL >-----# BaseURL = SEQ(name=u'BaseURL', mode=MODE_TYPE) _BaseURL_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __BaseURL_attlist_urlId = INT(name=u'urlId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __BaseURL_attlist_resourceName = STR_VIS(name=u'resourceName', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __BaseURL_attlist_resourceId = STR_VIS(name=u'resourceId', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BaseURL_attlist._cont = ASN1Dict([ (u'urlId', __BaseURL_attlist_urlId), (u'resourceName', __BaseURL_attlist_resourceName), (u'resourceId', __BaseURL_attlist_resourceId), ]) _BaseURL_attlist._ext = None _BaseURL_baseURL = STR_VIS(name=u'baseURL', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) BaseURL._cont = ASN1Dict([ (u'attlist', _BaseURL_attlist), (u'baseURL', _BaseURL_baseURL), ]) BaseURL._ext = None #-----< Component >-----# Component = SEQ(name=u'Component', mode=MODE_TYPE) _Component_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Component_attlist_componentType = ENUM(name=u'componentType', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_componentType._cont = ASN1Dict([(u'contig', 1), (u'mrna', 2)]) __Component_attlist_componentType._ext = None __Component_attlist_ctgId = INT(name=u'ctgId', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_chromosome = STR_VIS(name=u'chromosome', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_start = INT(name=u'start', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_end = INT(name=u'end', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_orientation = ENUM(name=u'orientation', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_orientation._cont = ASN1Dict([(u'fwd', 1), (u'rev', 2), (u'unknown', 3)]) __Component_attlist_orientation._ext = None __Component_attlist_gi = STR_VIS(name=u'gi', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_groupTerm = STR_VIS(name=u'groupTerm', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Component_attlist_contigLabel = STR_VIS(name=u'contigLabel', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Component_attlist._cont = ASN1Dict([ (u'componentType', __Component_attlist_componentType), (u'ctgId', __Component_attlist_ctgId), (u'accession', __Component_attlist_accession), (u'name', __Component_attlist_name), (u'chromosome', __Component_attlist_chromosome), (u'start', __Component_attlist_start), (u'end', __Component_attlist_end), (u'orientation', __Component_attlist_orientation), (u'gi', __Component_attlist_gi), (u'groupTerm', __Component_attlist_groupTerm), (u'contigLabel', __Component_attlist_contigLabel), ]) _Component_attlist._ext = None _Component_mapLoc = SEQ_OF(name=u'mapLoc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Component_mapLoc__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'MapLoc'))) _Component_mapLoc._cont = __Component_mapLoc__item_ Component._cont = ASN1Dict([ (u'attlist', _Component_attlist), (u'mapLoc', _Component_mapLoc), ]) Component._ext = None #-----< ExchangeSet >-----# ExchangeSet = SEQ(name=u'ExchangeSet', mode=MODE_TYPE) _ExchangeSet_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ExchangeSet_attlist_setType = STR_VIS(name=u'setType', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_attlist_setDepth = STR_VIS(name=u'setDepth', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_attlist_specVersion = STR_VIS(name=u'specVersion', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_attlist_dbSnpBuild = INT(name=u'dbSnpBuild', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_attlist_generated = STR_VIS(name=u'generated', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ExchangeSet_attlist._cont = ASN1Dict([ (u'setType', __ExchangeSet_attlist_setType), (u'setDepth', __ExchangeSet_attlist_setDepth), (u'specVersion', __ExchangeSet_attlist_specVersion), (u'dbSnpBuild', __ExchangeSet_attlist_dbSnpBuild), (u'generated', __ExchangeSet_attlist_generated), ]) _ExchangeSet_attlist._ext = None _ExchangeSet_sourceDatabase = SEQ(name=u'sourceDatabase', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_sourceDatabase_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___ExchangeSet_sourceDatabase_attlist_taxId = INT(name=u'taxId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___ExchangeSet_sourceDatabase_attlist_organism = STR_VIS(name=u'organism', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___ExchangeSet_sourceDatabase_attlist_dbSnpOrgAbbr = STR_VIS(name=u'dbSnpOrgAbbr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_sourceDatabase_attlist_gpipeOrgAbbr = STR_VIS(name=u'gpipeOrgAbbr', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_sourceDatabase_attlist._cont = ASN1Dict([ (u'taxId', ___ExchangeSet_sourceDatabase_attlist_taxId), (u'organism', ___ExchangeSet_sourceDatabase_attlist_organism), (u'dbSnpOrgAbbr', ___ExchangeSet_sourceDatabase_attlist_dbSnpOrgAbbr), (u'gpipeOrgAbbr', ___ExchangeSet_sourceDatabase_attlist_gpipeOrgAbbr), ]) __ExchangeSet_sourceDatabase_attlist._ext = None __ExchangeSet_sourceDatabase_sourceDatabase = NULL(name=u'sourceDatabase', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ExchangeSet_sourceDatabase._cont = ASN1Dict([ (u'attlist', __ExchangeSet_sourceDatabase_attlist), (u'sourceDatabase', __ExchangeSet_sourceDatabase_sourceDatabase), ]) _ExchangeSet_sourceDatabase._ext = None _ExchangeSet_rs = SEQ_OF(name=u'rs', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_rs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'Rs'))) _ExchangeSet_rs._cont = __ExchangeSet_rs__item_ _ExchangeSet_assay = SEQ(name=u'assay', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('Docsum-3-4', 'Assay')), opt=True) _ExchangeSet_query = SEQ(name=u'query', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_query_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___ExchangeSet_query_attlist_date = STR_VIS(name=u'date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_query_attlist_string = STR_VIS(name=u'string', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_query_attlist._cont = ASN1Dict([ (u'date', ___ExchangeSet_query_attlist_date), (u'string', ___ExchangeSet_query_attlist_string), ]) __ExchangeSet_query_attlist._ext = None __ExchangeSet_query_query = NULL(name=u'query', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ExchangeSet_query._cont = ASN1Dict([ (u'attlist', __ExchangeSet_query_attlist), (u'query', __ExchangeSet_query_query), ]) _ExchangeSet_query._ext = None _ExchangeSet_summary = SEQ(name=u'summary', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_summary_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___ExchangeSet_summary_attlist_numRsIds = INT(name=u'numRsIds', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_totalSeqLength = INT(name=u'totalSeqLength', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_numContigHits = INT(name=u'numContigHits', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_numGeneHits = INT(name=u'numGeneHits', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_numGiHits = INT(name=u'numGiHits', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_num3dStructs = INT(name=u'num3dStructs', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_numAlleleFreqs = INT(name=u'numAlleleFreqs', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_numStsHits = INT(name=u'numStsHits', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___ExchangeSet_summary_attlist_numUnigeneCids = INT(name=u'numUnigeneCids', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_summary_attlist._cont = ASN1Dict([ (u'numRsIds', ___ExchangeSet_summary_attlist_numRsIds), (u'totalSeqLength', ___ExchangeSet_summary_attlist_totalSeqLength), (u'numContigHits', ___ExchangeSet_summary_attlist_numContigHits), (u'numGeneHits', ___ExchangeSet_summary_attlist_numGeneHits), (u'numGiHits', ___ExchangeSet_summary_attlist_numGiHits), (u'num3dStructs', ___ExchangeSet_summary_attlist_num3dStructs), (u'numAlleleFreqs', ___ExchangeSet_summary_attlist_numAlleleFreqs), (u'numStsHits', ___ExchangeSet_summary_attlist_numStsHits), (u'numUnigeneCids', ___ExchangeSet_summary_attlist_numUnigeneCids), ]) __ExchangeSet_summary_attlist._ext = None __ExchangeSet_summary_summary = NULL(name=u'summary', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ExchangeSet_summary._cont = ASN1Dict([ (u'attlist', __ExchangeSet_summary_attlist), (u'summary', __ExchangeSet_summary_summary), ]) _ExchangeSet_summary._ext = None _ExchangeSet_baseURL = SEQ_OF(name=u'baseURL', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExchangeSet_baseURL__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'BaseURL'))) _ExchangeSet_baseURL._cont = __ExchangeSet_baseURL__item_ ExchangeSet._cont = ASN1Dict([ (u'attlist', _ExchangeSet_attlist), (u'sourceDatabase', _ExchangeSet_sourceDatabase), (u'rs', _ExchangeSet_rs), (u'assay', _ExchangeSet_assay), (u'query', _ExchangeSet_query), (u'summary', _ExchangeSet_summary), (u'baseURL', _ExchangeSet_baseURL), ]) ExchangeSet._ext = None #-----< FxnSet >-----# FxnSet = SEQ(name=u'FxnSet', mode=MODE_TYPE) _FxnSet_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __FxnSet_attlist_geneId = INT(name=u'geneId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_symbol = STR_VIS(name=u'symbol', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_mrnaAcc = STR_VIS(name=u'mrnaAcc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_mrnaVer = INT(name=u'mrnaVer', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_protAcc = STR_VIS(name=u'protAcc', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_protVer = INT(name=u'protVer', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_fxnClass = ENUM(name=u'fxnClass', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_fxnClass._cont = ASN1Dict([(u'locus-region', 1), (u'coding-unknown', 2), (u'synonymous-codon', 3), (u'non-synonymous-codon', 4), (u'mrna-utr', 5), (u'intron-variant', 6), (u'splice-region-variant', 7), (u'reference', 8), (u'coding-exception', 9), (u'coding-sequence-variant', 10), (u'nc-transcript-variant', 11), (u'downstream-variant-500B', 12), (u'upstream-variant-2KB', 13), (u'nonsense', 14), (u'missense', 15), (u'frameshift-variant', 16), (u'utr-variant-3-prime', 17), (u'utr-variant-5-prime', 18), (u'splice-acceptor-variant', 19), (u'splice-donor-variant', 20), (u'cds-indel', 21), (u'stop-gained', 22), (u'stop-lost', 23), (u'complex-change-in-transcript', 24), (u'incomplete-terminal-codon-variant', 25), (u'nmd-transcript-variant', 26), (u'mature-miRNA-variant', 27), (u'upstream-variant-5KB', 28), (u'downstream-variant-5KB', 29), (u'intergenic', 30)]) __FxnSet_attlist_fxnClass._ext = None __FxnSet_attlist_readingFrame = INT(name=u'readingFrame', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_allele = STR_VIS(name=u'allele', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_residue = STR_VIS(name=u'residue', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_aaPosition = INT(name=u'aaPosition', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_mrnaPosition = INT(name=u'mrnaPosition', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __FxnSet_attlist_soTerm = STR_VIS(name=u'soTerm', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _FxnSet_attlist._cont = ASN1Dict([ (u'geneId', __FxnSet_attlist_geneId), (u'symbol', __FxnSet_attlist_symbol), (u'mrnaAcc', __FxnSet_attlist_mrnaAcc), (u'mrnaVer', __FxnSet_attlist_mrnaVer), (u'protAcc', __FxnSet_attlist_protAcc), (u'protVer', __FxnSet_attlist_protVer), (u'fxnClass', __FxnSet_attlist_fxnClass), (u'readingFrame', __FxnSet_attlist_readingFrame), (u'allele', __FxnSet_attlist_allele), (u'residue', __FxnSet_attlist_residue), (u'aaPosition', __FxnSet_attlist_aaPosition), (u'mrnaPosition', __FxnSet_attlist_mrnaPosition), (u'soTerm', __FxnSet_attlist_soTerm), ]) _FxnSet_attlist._ext = None _FxnSet_fxnSet = NULL(name=u'fxnSet', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) FxnSet._cont = ASN1Dict([ (u'attlist', _FxnSet_attlist), (u'fxnSet', _FxnSet_fxnSet), ]) FxnSet._ext = None #-----< MapLoc >-----# MapLoc = SEQ(name=u'MapLoc', mode=MODE_TYPE) _MapLoc_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MapLoc_attlist_asnFrom = INT(name=u'asnFrom', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MapLoc_attlist_asnTo = INT(name=u'asnTo', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MapLoc_attlist_locType = ENUM(name=u'locType', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MapLoc_attlist_locType._cont = ASN1Dict([(u'insertion', 1), (u'exact', 2), (u'deletion', 3), (u'range-ins', 4), (u'range-exact', 5), (u'range-del', 6)]) __MapLoc_attlist_locType._ext = None __MapLoc_attlist_alnQuality = REAL(name=u'alnQuality', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) __MapLoc_attlist_orient = ENUM(name=u'orient', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_orient._cont = ASN1Dict([(u'forward', 1), (u'reverse', 2)]) __MapLoc_attlist_orient._ext = None __MapLoc_attlist_physMapInt = INT(name=u'physMapInt', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_leftFlankNeighborPos = INT(name=u'leftFlankNeighborPos', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_rightFlankNeighborPos = INT(name=u'rightFlankNeighborPos', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_leftContigNeighborPos = INT(name=u'leftContigNeighborPos', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_rightContigNeighborPos = INT(name=u'rightContigNeighborPos', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_numberOfMismatches = INT(name=u'numberOfMismatches', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_numberOfDeletions = INT(name=u'numberOfDeletions', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_numberOfInsertions = INT(name=u'numberOfInsertions', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_attlist_refAllele = STR_VIS(name=u'refAllele', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MapLoc_attlist._cont = ASN1Dict([ (u'asnFrom', __MapLoc_attlist_asnFrom), (u'asnTo', __MapLoc_attlist_asnTo), (u'locType', __MapLoc_attlist_locType), (u'alnQuality', __MapLoc_attlist_alnQuality), (u'orient', __MapLoc_attlist_orient), (u'physMapInt', __MapLoc_attlist_physMapInt), (u'leftFlankNeighborPos', __MapLoc_attlist_leftFlankNeighborPos), (u'rightFlankNeighborPos', __MapLoc_attlist_rightFlankNeighborPos), (u'leftContigNeighborPos', __MapLoc_attlist_leftContigNeighborPos), (u'rightContigNeighborPos', __MapLoc_attlist_rightContigNeighborPos), (u'numberOfMismatches', __MapLoc_attlist_numberOfMismatches), (u'numberOfDeletions', __MapLoc_attlist_numberOfDeletions), (u'numberOfInsertions', __MapLoc_attlist_numberOfInsertions), (u'refAllele', __MapLoc_attlist_refAllele), ]) _MapLoc_attlist._ext = None _MapLoc_fxnSet = SEQ_OF(name=u'fxnSet', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MapLoc_fxnSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'FxnSet'))) _MapLoc_fxnSet._cont = __MapLoc_fxnSet__item_ MapLoc._cont = ASN1Dict([ (u'attlist', _MapLoc_attlist), (u'fxnSet', _MapLoc_fxnSet), ]) MapLoc._ext = None #-----< PrimarySequence >-----# PrimarySequence = SEQ(name=u'PrimarySequence', mode=MODE_TYPE) _PrimarySequence_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PrimarySequence_attlist_dbSnpBuild = INT(name=u'dbSnpBuild', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PrimarySequence_attlist_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PrimarySequence_attlist_source = ENUM(name=u'source', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PrimarySequence_attlist_source._cont = ASN1Dict([(u'submitter', 1), (u'blastmb', 2), (u'xm', 3), (u'remap', 4), (u'hgvs', 5)]) __PrimarySequence_attlist_source._ext = None __PrimarySequence_attlist_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrimarySequence_attlist._cont = ASN1Dict([ (u'dbSnpBuild', __PrimarySequence_attlist_dbSnpBuild), (u'gi', __PrimarySequence_attlist_gi), (u'source', __PrimarySequence_attlist_source), (u'accession', __PrimarySequence_attlist_accession), ]) _PrimarySequence_attlist._ext = None _PrimarySequence_mapLoc = SEQ_OF(name=u'mapLoc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PrimarySequence_mapLoc__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'MapLoc'))) _PrimarySequence_mapLoc._cont = __PrimarySequence_mapLoc__item_ PrimarySequence._cont = ASN1Dict([ (u'attlist', _PrimarySequence_attlist), (u'mapLoc', _PrimarySequence_mapLoc), ]) PrimarySequence._ext = None #-----< Rs >-----# Rs = SEQ(name=u'Rs', mode=MODE_TYPE) _Rs_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_attlist_rsId = INT(name=u'rsId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_attlist_snpClass = ENUM(name=u'snpClass', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_attlist_snpClass._cont = ASN1Dict([(u'snp', 1), (u'in-del', 2), (u'heterozygous', 3), (u'microsatellite', 4), (u'named-locus', 5), (u'no-variation', 6), (u'mixed', 7), (u'multinucleotide-polymorphism', 8)]) __Rs_attlist_snpClass._ext = None __Rs_attlist_snpType = ENUM(name=u'snpType', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_attlist_snpType._cont = ASN1Dict([(u'notwithdrawn', 1), (u'artifact', 2), (u'gene-duplication', 3), (u'duplicate-submission', 4), (u'notspecified', 5), (u'ambiguous-location', 6), (u'low-map-quality', 7)]) __Rs_attlist_snpType._ext = None __Rs_attlist_molType = ENUM(name=u'molType', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_attlist_molType._cont = ASN1Dict([(u'genomic', 1), (u'cDNA', 2), (u'mito', 3), (u'chloro', 4), (u'unknown', 5)]) __Rs_attlist_molType._ext = None __Rs_attlist_validProbMin = INT(name=u'validProbMin', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_attlist_validProbMax = INT(name=u'validProbMax', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_attlist_genotype = BOOL(name=u'genotype', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_attlist_bitField = STR_VIS(name=u'bitField', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_attlist_taxId = INT(name=u'taxId', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Rs_attlist._cont = ASN1Dict([ (u'rsId', __Rs_attlist_rsId), (u'snpClass', __Rs_attlist_snpClass), (u'snpType', __Rs_attlist_snpType), (u'molType', __Rs_attlist_molType), (u'validProbMin', __Rs_attlist_validProbMin), (u'validProbMax', __Rs_attlist_validProbMax), (u'genotype', __Rs_attlist_genotype), (u'bitField', __Rs_attlist_bitField), (u'taxId', __Rs_attlist_taxId), ]) _Rs_attlist._ext = None _Rs_het = SEQ(name=u'het', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_het_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_het_attlist_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_het_attlist_type._cont = ASN1Dict([(u'est', 1), (u'obs', 2)]) ___Rs_het_attlist_type._ext = None ___Rs_het_attlist_value = REAL(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) ___Rs_het_attlist_stdError = REAL(name=u'stdError', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) __Rs_het_attlist._cont = ASN1Dict([ (u'type', ___Rs_het_attlist_type), (u'value', ___Rs_het_attlist_value), (u'stdError', ___Rs_het_attlist_stdError), ]) __Rs_het_attlist._ext = None __Rs_het_het = NULL(name=u'het', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rs_het._cont = ASN1Dict([ (u'attlist', __Rs_het_attlist), (u'het', __Rs_het_het), ]) _Rs_het._ext = None _Rs_validation = SEQ(name=u'validation', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_validation_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_validation_attlist_byCluster = BOOL(name=u'byCluster', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_attlist_byFrequency = BOOL(name=u'byFrequency', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_attlist_byOtherPop = BOOL(name=u'byOtherPop', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_attlist_by2Hit2Allele = BOOL(name=u'by2Hit2Allele', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_attlist_byHapMap = BOOL(name=u'byHapMap', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_attlist_by1000G = BOOL(name=u'by1000G', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_attlist_suspect = BOOL(name=u'suspect', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_validation_attlist._cont = ASN1Dict([ (u'byCluster', ___Rs_validation_attlist_byCluster), (u'byFrequency', ___Rs_validation_attlist_byFrequency), (u'byOtherPop', ___Rs_validation_attlist_byOtherPop), (u'by2Hit2Allele', ___Rs_validation_attlist_by2Hit2Allele), (u'byHapMap', ___Rs_validation_attlist_byHapMap), (u'by1000G', ___Rs_validation_attlist_by1000G), (u'suspect', ___Rs_validation_attlist_suspect), ]) __Rs_validation_attlist._ext = None __Rs_validation_otherPopBatchId = SEQ_OF(name=u'otherPopBatchId', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_otherPopBatchId__item_ = INT(name='_item_', mode=MODE_TYPE) __Rs_validation_otherPopBatchId._cont = ___Rs_validation_otherPopBatchId__item_ __Rs_validation_twoHit2AlleleBatchId = SEQ_OF(name=u'twoHit2AlleleBatchId', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_twoHit2AlleleBatchId__item_ = INT(name='_item_', mode=MODE_TYPE) __Rs_validation_twoHit2AlleleBatchId._cont = ___Rs_validation_twoHit2AlleleBatchId__item_ __Rs_validation_frequencyClass = SEQ_OF(name=u'frequencyClass', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_frequencyClass__item_ = INT(name='_item_', mode=MODE_TYPE) __Rs_validation_frequencyClass._cont = ___Rs_validation_frequencyClass__item_ __Rs_validation_hapMapPhase = SEQ_OF(name=u'hapMapPhase', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_hapMapPhase__item_ = INT(name='_item_', mode=MODE_TYPE) __Rs_validation_hapMapPhase._cont = ___Rs_validation_hapMapPhase__item_ __Rs_validation_tGPPhase = SEQ_OF(name=u'tGPPhase', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_tGPPhase__item_ = INT(name='_item_', mode=MODE_TYPE) __Rs_validation_tGPPhase._cont = ___Rs_validation_tGPPhase__item_ __Rs_validation_suspectEvidence = SEQ_OF(name=u'suspectEvidence', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_validation_suspectEvidence__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) __Rs_validation_suspectEvidence._cont = ___Rs_validation_suspectEvidence__item_ _Rs_validation._cont = ASN1Dict([ (u'attlist', __Rs_validation_attlist), (u'otherPopBatchId', __Rs_validation_otherPopBatchId), (u'twoHit2AlleleBatchId', __Rs_validation_twoHit2AlleleBatchId), (u'frequencyClass', __Rs_validation_frequencyClass), (u'hapMapPhase', __Rs_validation_hapMapPhase), (u'tGPPhase', __Rs_validation_tGPPhase), (u'suspectEvidence', __Rs_validation_suspectEvidence), ]) _Rs_validation._ext = None _Rs_create = SEQ(name=u'create', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_create_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_create_attlist_build = INT(name=u'build', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_create_attlist_date = STR_VIS(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_create_attlist._cont = ASN1Dict([ (u'build', ___Rs_create_attlist_build), (u'date', ___Rs_create_attlist_date), ]) __Rs_create_attlist._ext = None __Rs_create_create = NULL(name=u'create', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rs_create._cont = ASN1Dict([ (u'attlist', __Rs_create_attlist), (u'create', __Rs_create_create), ]) _Rs_create._ext = None _Rs_update = SEQ(name=u'update', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_update_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_update_attlist_build = INT(name=u'build', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_update_attlist_date = STR_VIS(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_update_attlist._cont = ASN1Dict([ (u'build', ___Rs_update_attlist_build), (u'date', ___Rs_update_attlist_date), ]) __Rs_update_attlist._ext = None __Rs_update_update = NULL(name=u'update', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rs_update._cont = ASN1Dict([ (u'attlist', __Rs_update_attlist), (u'update', __Rs_update_update), ]) _Rs_update._ext = None _Rs_sequence = SEQ(name=u'sequence', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_sequence_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_sequence_attlist_exemplarSs = INT(name=u'exemplarSs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Rs_sequence_attlist_ancestralAllele = STR_VIS(name=u'ancestralAllele', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_sequence_attlist._cont = ASN1Dict([ (u'exemplarSs', ___Rs_sequence_attlist_exemplarSs), (u'ancestralAllele', ___Rs_sequence_attlist_ancestralAllele), ]) __Rs_sequence_attlist._ext = None __Rs_sequence_seq5 = STR_VIS(name=u'seq5', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_sequence_observed = STR_VIS(name=u'observed', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_sequence_seq3 = STR_VIS(name=u'seq3', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Rs_sequence._cont = ASN1Dict([ (u'attlist', __Rs_sequence_attlist), (u'seq5', __Rs_sequence_seq5), (u'observed', __Rs_sequence_observed), (u'seq3', __Rs_sequence_seq3), ]) _Rs_sequence._ext = None _Rs_ss = SEQ_OF(name=u'ss', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_ss__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'Ss'))) _Rs_ss._cont = __Rs_ss__item_ _Rs_assembly = SEQ_OF(name=u'assembly', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_assembly__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'Assembly'))) _Rs_assembly._cont = __Rs_assembly__item_ _Rs_primarySequence = SEQ_OF(name=u'primarySequence', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_primarySequence__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'PrimarySequence'))) _Rs_primarySequence._cont = __Rs_primarySequence__item_ _Rs_rsStruct = SEQ_OF(name=u'rsStruct', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_rsStruct__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'RsStruct'))) _Rs_rsStruct._cont = __Rs_rsStruct__item_ _Rs_rsLinkout = SEQ_OF(name=u'rsLinkout', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_rsLinkout__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('Docsum-3-4', 'RsLinkout'))) _Rs_rsLinkout._cont = __Rs_rsLinkout__item_ _Rs_mergeHistory = SEQ_OF(name=u'mergeHistory', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_mergeHistory__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Rs_mergeHistory__item__attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Rs_mergeHistory__item__attlist_rsId = INT(name=u'rsId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Rs_mergeHistory__item__attlist_buildId = INT(name=u'buildId', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Rs_mergeHistory__item__attlist_orientFlip = BOOL(name=u'orientFlip', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_mergeHistory__item__attlist._cont = ASN1Dict([ (u'rsId', ____Rs_mergeHistory__item__attlist_rsId), (u'buildId', ____Rs_mergeHistory__item__attlist_buildId), (u'orientFlip', ____Rs_mergeHistory__item__attlist_orientFlip), ]) ___Rs_mergeHistory__item__attlist._ext = None ___Rs_mergeHistory__item__mergeHistory = NULL(name=u'mergeHistory', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_mergeHistory__item_._cont = ASN1Dict([ (u'attlist', ___Rs_mergeHistory__item__attlist), (u'mergeHistory', ___Rs_mergeHistory__item__mergeHistory), ]) __Rs_mergeHistory__item_._ext = None _Rs_mergeHistory._cont = __Rs_mergeHistory__item_ _Rs_hgvs = SEQ_OF(name=u'hgvs', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_hgvs__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Rs_hgvs._cont = __Rs_hgvs__item_ _Rs_alleleOrigin = SEQ_OF(name=u'alleleOrigin', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_alleleOrigin__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Rs_alleleOrigin__item__attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Rs_alleleOrigin__item__attlist_allele = STR_VIS(name=u'allele', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_alleleOrigin__item__attlist._cont = ASN1Dict([ (u'allele', ____Rs_alleleOrigin__item__attlist_allele), ]) ___Rs_alleleOrigin__item__attlist._ext = None ___Rs_alleleOrigin__item__alleleOrigin = INT(name=u'alleleOrigin', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_alleleOrigin__item_._cont = ASN1Dict([ (u'attlist', ___Rs_alleleOrigin__item__attlist), (u'alleleOrigin', ___Rs_alleleOrigin__item__alleleOrigin), ]) __Rs_alleleOrigin__item_._ext = None _Rs_alleleOrigin._cont = __Rs_alleleOrigin__item_ _Rs_phenotype = SEQ_OF(name=u'phenotype', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_phenotype__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Rs_phenotype__item__clinicalSignificance = SEQ_OF(name=u'clinicalSignificance', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Rs_phenotype__item__clinicalSignificance__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) ___Rs_phenotype__item__clinicalSignificance._cont = ____Rs_phenotype__item__clinicalSignificance__item_ __Rs_phenotype__item_._cont = ASN1Dict([ (u'clinicalSignificance', ___Rs_phenotype__item__clinicalSignificance), ]) __Rs_phenotype__item_._ext = None _Rs_phenotype._cont = __Rs_phenotype__item_ _Rs_bioSource = SEQ_OF(name=u'bioSource', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_bioSource__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Rs_bioSource__item__genome = SEQ_OF(name=u'genome', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Rs_bioSource__item__genome__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) ___Rs_bioSource__item__genome._cont = ____Rs_bioSource__item__genome__item_ ___Rs_bioSource__item__origin = SEQ_OF(name=u'origin', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Rs_bioSource__item__origin__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) ___Rs_bioSource__item__origin._cont = ____Rs_bioSource__item__origin__item_ __Rs_bioSource__item_._cont = ASN1Dict([ (u'genome', ___Rs_bioSource__item__genome), (u'origin', ___Rs_bioSource__item__origin), ]) __Rs_bioSource__item_._ext = None _Rs_bioSource._cont = __Rs_bioSource__item_ _Rs_frequency = SEQ_OF(name=u'frequency', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Rs_frequency__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Rs_frequency__item__attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Rs_frequency__item__attlist_freq = REAL(name=u'freq', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) ____Rs_frequency__item__attlist_allele = STR_VIS(name=u'allele', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Rs_frequency__item__attlist_popId = INT(name=u'popId', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Rs_frequency__item__attlist_sampleSize = INT(name=u'sampleSize', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Rs_frequency__item__attlist._cont = ASN1Dict([ (u'freq', ____Rs_frequency__item__attlist_freq), (u'allele', ____Rs_frequency__item__attlist_allele), (u'popId', ____Rs_frequency__item__attlist_popId), (u'sampleSize', ____Rs_frequency__item__attlist_sampleSize), ]) ___Rs_frequency__item__attlist._ext = None ___Rs_frequency__item__frequency = NULL(name=u'frequency', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Rs_frequency__item_._cont = ASN1Dict([ (u'attlist', ___Rs_frequency__item__attlist), (u'frequency', ___Rs_frequency__item__frequency), ]) __Rs_frequency__item_._ext = None _Rs_frequency._cont = __Rs_frequency__item_ Rs._cont = ASN1Dict([ (u'attlist', _Rs_attlist), (u'het', _Rs_het), (u'validation', _Rs_validation), (u'create', _Rs_create), (u'update', _Rs_update), (u'sequence', _Rs_sequence), (u'ss', _Rs_ss), (u'assembly', _Rs_assembly), (u'primarySequence', _Rs_primarySequence), (u'rsStruct', _Rs_rsStruct), (u'rsLinkout', _Rs_rsLinkout), (u'mergeHistory', _Rs_mergeHistory), (u'hgvs', _Rs_hgvs), (u'alleleOrigin', _Rs_alleleOrigin), (u'phenotype', _Rs_phenotype), (u'bioSource', _Rs_bioSource), (u'frequency', _Rs_frequency), ]) Rs._ext = None #-----< RsLinkout >-----# RsLinkout = SEQ(name=u'RsLinkout', mode=MODE_TYPE) _RsLinkout_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RsLinkout_attlist_resourceId = STR_VIS(name=u'resourceId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RsLinkout_attlist_linkValue = STR_VIS(name=u'linkValue', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RsLinkout_attlist._cont = ASN1Dict([ (u'resourceId', __RsLinkout_attlist_resourceId), (u'linkValue', __RsLinkout_attlist_linkValue), ]) _RsLinkout_attlist._ext = None _RsLinkout_rsLinkout = NULL(name=u'rsLinkout', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) RsLinkout._cont = ASN1Dict([ (u'attlist', _RsLinkout_attlist), (u'rsLinkout', _RsLinkout_rsLinkout), ]) RsLinkout._ext = None #-----< RsStruct >-----# RsStruct = SEQ(name=u'RsStruct', mode=MODE_TYPE) _RsStruct_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RsStruct_attlist_protAcc = STR_VIS(name=u'protAcc', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_protGi = INT(name=u'protGi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_protLoc = INT(name=u'protLoc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_protResidue = STR_VIS(name=u'protResidue', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_rsResidue = STR_VIS(name=u'rsResidue', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_structGi = INT(name=u'structGi', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_structLoc = INT(name=u'structLoc', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __RsStruct_attlist_structResidue = STR_VIS(name=u'structResidue', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _RsStruct_attlist._cont = ASN1Dict([ (u'protAcc', __RsStruct_attlist_protAcc), (u'protGi', __RsStruct_attlist_protGi), (u'protLoc', __RsStruct_attlist_protLoc), (u'protResidue', __RsStruct_attlist_protResidue), (u'rsResidue', __RsStruct_attlist_rsResidue), (u'structGi', __RsStruct_attlist_structGi), (u'structLoc', __RsStruct_attlist_structLoc), (u'structResidue', __RsStruct_attlist_structResidue), ]) _RsStruct_attlist._ext = None _RsStruct_rsStruct = NULL(name=u'rsStruct', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) RsStruct._cont = ASN1Dict([ (u'attlist', _RsStruct_attlist), (u'rsStruct', _RsStruct_rsStruct), ]) RsStruct._ext = None #-----< Ss >-----# Ss = SEQ(name=u'Ss', mode=MODE_TYPE) _Ss_attlist = SET(name=u'attlist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Ss_attlist_ssId = INT(name=u'ssId', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Ss_attlist_handle = STR_VIS(name=u'handle', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Ss_attlist_batchId = INT(name=u'batchId', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Ss_attlist_locSnpId = STR_VIS(name=u'locSnpId', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_subSnpClass = ENUM(name=u'subSnpClass', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_subSnpClass._cont = ASN1Dict([(u'snp', 1), (u'in-del', 2), (u'heterozygous', 3), (u'microsatellite', 4), (u'named-locus', 5), (u'no-variation', 6), (u'mixed', 7), (u'multinucleotide-polymorphism', 8)]) __Ss_attlist_subSnpClass._ext = None __Ss_attlist_orient = ENUM(name=u'orient', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_orient._cont = ASN1Dict([(u'forward', 1), (u'reverse', 2)]) __Ss_attlist_orient._ext = None __Ss_attlist_strand = ENUM(name=u'strand', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_strand._cont = ASN1Dict([(u'top', 1), (u'bottom', 2)]) __Ss_attlist_strand._ext = None __Ss_attlist_molType = ENUM(name=u'molType', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_molType._cont = ASN1Dict([(u'genomic', 1), (u'cDNA', 2), (u'mito', 3), (u'chloro', 4), (u'unknown', 5)]) __Ss_attlist_molType._ext = None __Ss_attlist_buildId = INT(name=u'buildId', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_methodClass = ENUM(name=u'methodClass', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_methodClass._cont = ASN1Dict([(u'dHPLC', 1), (u'hybridize', 2), (u'computed', 3), (u'sSCP', 4), (u'other', 5), (u'unknown', 6), (u'rFLP', 7), (u'sequence', 8)]) __Ss_attlist_methodClass._ext = None __Ss_attlist_validated = ENUM(name=u'validated', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_validated._cont = ASN1Dict([(u'by-submitter', 1), (u'by-frequency', 2), (u'by-cluster', 3)]) __Ss_attlist_validated._ext = None __Ss_attlist_linkoutUrl = STR_VIS(name=u'linkoutUrl', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_ssAlias = STR_VIS(name=u'ssAlias', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_alleleOrigin = INT(name=u'alleleOrigin', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_attlist_clinicalSignificance = STR_VIS(name=u'clinicalSignificance', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Ss_attlist._cont = ASN1Dict([ (u'ssId', __Ss_attlist_ssId), (u'handle', __Ss_attlist_handle), (u'batchId', __Ss_attlist_batchId), (u'locSnpId', __Ss_attlist_locSnpId), (u'subSnpClass', __Ss_attlist_subSnpClass), (u'orient', __Ss_attlist_orient), (u'strand', __Ss_attlist_strand), (u'molType', __Ss_attlist_molType), (u'buildId', __Ss_attlist_buildId), (u'methodClass', __Ss_attlist_methodClass), (u'validated', __Ss_attlist_validated), (u'linkoutUrl', __Ss_attlist_linkoutUrl), (u'ssAlias', __Ss_attlist_ssAlias), (u'alleleOrigin', __Ss_attlist_alleleOrigin), (u'clinicalSignificance', __Ss_attlist_clinicalSignificance), ]) _Ss_attlist._ext = None _Ss_sequence = SEQ(name=u'sequence', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Ss_sequence_seq5 = STR_VIS(name=u'seq5', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Ss_sequence_observed = STR_VIS(name=u'observed', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Ss_sequence_seq3 = STR_VIS(name=u'seq3', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Ss_sequence._cont = ASN1Dict([ (u'seq5', __Ss_sequence_seq5), (u'observed', __Ss_sequence_observed), (u'seq3', __Ss_sequence_seq3), ]) _Ss_sequence._ext = None Ss._cont = ASN1Dict([ (u'attlist', _Ss_attlist), (u'sequence', _Ss_sequence), ]) Ss._ext = None _all_ = [ __Assay_attlist_handle, __Assay_attlist_batch, __Assay_attlist_batchId, __Assay_attlist_batchType, __Assay_attlist_molType, __Assay_attlist_sampleSize, __Assay_attlist_population, __Assay_attlist_linkoutUrl, _Assay_attlist, ____Assay_method_eMethod_attlist_name, ____Assay_method_eMethod_attlist_id, ___Assay_method_eMethod_attlist, ___Assay_method_eMethod_exception, __Assay_method_eMethod, _Assay_method, ___Assay_taxonomy_attlist_id, ___Assay_taxonomy_attlist_organism, __Assay_taxonomy_attlist, __Assay_taxonomy_taxonomy, _Assay_taxonomy, __Assay_strains__item_, _Assay_strains, _Assay_comment, __Assay_citation__item_, _Assay_citation, Assay, __Assembly_attlist_dbSnpBuild, __Assembly_attlist_genomeBuild, __Assembly_attlist_groupLabel, __Assembly_attlist_assemblySource, __Assembly_attlist_current, __Assembly_attlist_reference, _Assembly_attlist, __Assembly_component__item_, _Assembly_component, ___Assembly_snpStat_attlist_mapWeight, ___Assembly_snpStat_attlist_chromCount, ___Assembly_snpStat_attlist_placedContigCount, ___Assembly_snpStat_attlist_unplacedContigCount, ___Assembly_snpStat_attlist_seqlocCount, ___Assembly_snpStat_attlist_hapCount, __Assembly_snpStat_attlist, __Assembly_snpStat_snpStat, _Assembly_snpStat, Assembly, __BaseURL_attlist_urlId, __BaseURL_attlist_resourceName, __BaseURL_attlist_resourceId, _BaseURL_attlist, _BaseURL_baseURL, BaseURL, __Component_attlist_componentType, __Component_attlist_ctgId, __Component_attlist_accession, __Component_attlist_name, __Component_attlist_chromosome, __Component_attlist_start, __Component_attlist_end, __Component_attlist_orientation, __Component_attlist_gi, __Component_attlist_groupTerm, __Component_attlist_contigLabel, _Component_attlist, __Component_mapLoc__item_, _Component_mapLoc, Component, __ExchangeSet_attlist_setType, __ExchangeSet_attlist_setDepth, __ExchangeSet_attlist_specVersion, __ExchangeSet_attlist_dbSnpBuild, __ExchangeSet_attlist_generated, _ExchangeSet_attlist, ___ExchangeSet_sourceDatabase_attlist_taxId, ___ExchangeSet_sourceDatabase_attlist_organism, ___ExchangeSet_sourceDatabase_attlist_dbSnpOrgAbbr, ___ExchangeSet_sourceDatabase_attlist_gpipeOrgAbbr, __ExchangeSet_sourceDatabase_attlist, __ExchangeSet_sourceDatabase_sourceDatabase, _ExchangeSet_sourceDatabase, __ExchangeSet_rs__item_, _ExchangeSet_rs, _ExchangeSet_assay, ___ExchangeSet_query_attlist_date, ___ExchangeSet_query_attlist_string, __ExchangeSet_query_attlist, __ExchangeSet_query_query, _ExchangeSet_query, ___ExchangeSet_summary_attlist_numRsIds, ___ExchangeSet_summary_attlist_totalSeqLength, ___ExchangeSet_summary_attlist_numContigHits, ___ExchangeSet_summary_attlist_numGeneHits, ___ExchangeSet_summary_attlist_numGiHits, ___ExchangeSet_summary_attlist_num3dStructs, ___ExchangeSet_summary_attlist_numAlleleFreqs, ___ExchangeSet_summary_attlist_numStsHits, ___ExchangeSet_summary_attlist_numUnigeneCids, __ExchangeSet_summary_attlist, __ExchangeSet_summary_summary, _ExchangeSet_summary, __ExchangeSet_baseURL__item_, _ExchangeSet_baseURL, ExchangeSet, __FxnSet_attlist_geneId, __FxnSet_attlist_symbol, __FxnSet_attlist_mrnaAcc, __FxnSet_attlist_mrnaVer, __FxnSet_attlist_protAcc, __FxnSet_attlist_protVer, __FxnSet_attlist_fxnClass, __FxnSet_attlist_readingFrame, __FxnSet_attlist_allele, __FxnSet_attlist_residue, __FxnSet_attlist_aaPosition, __FxnSet_attlist_mrnaPosition, __FxnSet_attlist_soTerm, _FxnSet_attlist, _FxnSet_fxnSet, FxnSet, __MapLoc_attlist_asnFrom, __MapLoc_attlist_asnTo, __MapLoc_attlist_locType, __MapLoc_attlist_alnQuality, __MapLoc_attlist_orient, __MapLoc_attlist_physMapInt, __MapLoc_attlist_leftFlankNeighborPos, __MapLoc_attlist_rightFlankNeighborPos, __MapLoc_attlist_leftContigNeighborPos, __MapLoc_attlist_rightContigNeighborPos, __MapLoc_attlist_numberOfMismatches, __MapLoc_attlist_numberOfDeletions, __MapLoc_attlist_numberOfInsertions, __MapLoc_attlist_refAllele, _MapLoc_attlist, __MapLoc_fxnSet__item_, _MapLoc_fxnSet, MapLoc, __PrimarySequence_attlist_dbSnpBuild, __PrimarySequence_attlist_gi, __PrimarySequence_attlist_source, __PrimarySequence_attlist_accession, _PrimarySequence_attlist, __PrimarySequence_mapLoc__item_, _PrimarySequence_mapLoc, PrimarySequence, __Rs_attlist_rsId, __Rs_attlist_snpClass, __Rs_attlist_snpType, __Rs_attlist_molType, __Rs_attlist_validProbMin, __Rs_attlist_validProbMax, __Rs_attlist_genotype, __Rs_attlist_bitField, __Rs_attlist_taxId, _Rs_attlist, ___Rs_het_attlist_type, ___Rs_het_attlist_value, ___Rs_het_attlist_stdError, __Rs_het_attlist, __Rs_het_het, _Rs_het, ___Rs_validation_attlist_byCluster, ___Rs_validation_attlist_byFrequency, ___Rs_validation_attlist_byOtherPop, ___Rs_validation_attlist_by2Hit2Allele, ___Rs_validation_attlist_byHapMap, ___Rs_validation_attlist_by1000G, ___Rs_validation_attlist_suspect, __Rs_validation_attlist, ___Rs_validation_otherPopBatchId__item_, __Rs_validation_otherPopBatchId, ___Rs_validation_twoHit2AlleleBatchId__item_, __Rs_validation_twoHit2AlleleBatchId, ___Rs_validation_frequencyClass__item_, __Rs_validation_frequencyClass, ___Rs_validation_hapMapPhase__item_, __Rs_validation_hapMapPhase, ___Rs_validation_tGPPhase__item_, __Rs_validation_tGPPhase, ___Rs_validation_suspectEvidence__item_, __Rs_validation_suspectEvidence, _Rs_validation, ___Rs_create_attlist_build, ___Rs_create_attlist_date, __Rs_create_attlist, __Rs_create_create, _Rs_create, ___Rs_update_attlist_build, ___Rs_update_attlist_date, __Rs_update_attlist, __Rs_update_update, _Rs_update, ___Rs_sequence_attlist_exemplarSs, ___Rs_sequence_attlist_ancestralAllele, __Rs_sequence_attlist, __Rs_sequence_seq5, __Rs_sequence_observed, __Rs_sequence_seq3, _Rs_sequence, __Rs_ss__item_, _Rs_ss, __Rs_assembly__item_, _Rs_assembly, __Rs_primarySequence__item_, _Rs_primarySequence, __Rs_rsStruct__item_, _Rs_rsStruct, __Rs_rsLinkout__item_, _Rs_rsLinkout, ____Rs_mergeHistory__item__attlist_rsId, ____Rs_mergeHistory__item__attlist_buildId, ____Rs_mergeHistory__item__attlist_orientFlip, ___Rs_mergeHistory__item__attlist, ___Rs_mergeHistory__item__mergeHistory, __Rs_mergeHistory__item_, _Rs_mergeHistory, __Rs_hgvs__item_, _Rs_hgvs, ____Rs_alleleOrigin__item__attlist_allele, ___Rs_alleleOrigin__item__attlist, ___Rs_alleleOrigin__item__alleleOrigin, __Rs_alleleOrigin__item_, _Rs_alleleOrigin, ____Rs_phenotype__item__clinicalSignificance__item_, ___Rs_phenotype__item__clinicalSignificance, __Rs_phenotype__item_, _Rs_phenotype, ____Rs_bioSource__item__genome__item_, ___Rs_bioSource__item__genome, ____Rs_bioSource__item__origin__item_, ___Rs_bioSource__item__origin, __Rs_bioSource__item_, _Rs_bioSource, ____Rs_frequency__item__attlist_freq, ____Rs_frequency__item__attlist_allele, ____Rs_frequency__item__attlist_popId, ____Rs_frequency__item__attlist_sampleSize, ___Rs_frequency__item__attlist, ___Rs_frequency__item__frequency, __Rs_frequency__item_, _Rs_frequency, Rs, __RsLinkout_attlist_resourceId, __RsLinkout_attlist_linkValue, _RsLinkout_attlist, _RsLinkout_rsLinkout, RsLinkout, __RsStruct_attlist_protAcc, __RsStruct_attlist_protGi, __RsStruct_attlist_protLoc, __RsStruct_attlist_protResidue, __RsStruct_attlist_rsResidue, __RsStruct_attlist_structGi, __RsStruct_attlist_structLoc, __RsStruct_attlist_structResidue, _RsStruct_attlist, _RsStruct_rsStruct, RsStruct, __Ss_attlist_ssId, __Ss_attlist_handle, __Ss_attlist_batchId, __Ss_attlist_locSnpId, __Ss_attlist_subSnpClass, __Ss_attlist_orient, __Ss_attlist_strand, __Ss_attlist_molType, __Ss_attlist_buildId, __Ss_attlist_methodClass, __Ss_attlist_validated, __Ss_attlist_linkoutUrl, __Ss_attlist_ssAlias, __Ss_attlist_alleleOrigin, __Ss_attlist_clinicalSignificance, _Ss_attlist, __Ss_sequence_seq5, __Ss_sequence_observed, __Ss_sequence_seq3, _Ss_sequence, Ss, ] class NCBI_Entrez2: _name_ = u'NCBI-Entrez2' _oid_ = [] _obj_ = [ u'Entrez2-dt', u'Entrez2-db-id', u'Entrez2-field-id', u'Entrez2-link-id', u'Entrez2-id-list', u'Entrez2-boolean-exp', u'Entrez2-boolean-element', u'Entrez2-boolean-term', u'Entrez2-operator', u'Entrez2-request', u'E2Request', u'Entrez2-eval-boolean', u'Entrez2-dt-filter', u'Entrez2-limits', u'Entrez2-id', u'Entrez2-term-query', u'Entrez2-hier-query', u'Entrez2-term-pos', u'Entrez2-get-links', u'Entrez2-reply', u'E2Reply', u'Entrez2-info', u'Entrez2-db-info', u'Entrez2-field-info', u'Entrez2-link-info', u'Entrez2-docsum-field-type', u'Entrez2-docsum-field-info', u'Entrez2-boolean-reply', u'Entrez2-docsum-list', u'Entrez2-docsum', u'Entrez2-docsum-data', u'Entrez2-term-list', u'Entrez2-term', u'Entrez2-hier-node', u'Entrez2-link-set', u'Entrez2-link-count-list', u'Entrez2-link-count', ] _type_ = [ u'Entrez2-dt', u'Entrez2-db-id', u'Entrez2-field-id', u'Entrez2-link-id', u'Entrez2-id-list', u'Entrez2-boolean-exp', u'Entrez2-boolean-element', u'Entrez2-boolean-term', u'Entrez2-operator', u'Entrez2-request', u'E2Request', u'Entrez2-eval-boolean', u'Entrez2-dt-filter', u'Entrez2-limits', u'Entrez2-id', u'Entrez2-term-query', u'Entrez2-hier-query', u'Entrez2-term-pos', u'Entrez2-get-links', u'Entrez2-reply', u'E2Reply', u'Entrez2-info', u'Entrez2-db-info', u'Entrez2-field-info', u'Entrez2-link-info', u'Entrez2-docsum-field-type', u'Entrez2-docsum-field-info', u'Entrez2-boolean-reply', u'Entrez2-docsum-list', u'Entrez2-docsum', u'Entrez2-docsum-data', u'Entrez2-term-list', u'Entrez2-term', u'Entrez2-hier-node', u'Entrez2-link-set', u'Entrez2-link-count-list', u'Entrez2-link-count', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Entrez2-dt >-----# Entrez2_dt = INT(name=u'Entrez2-dt', mode=MODE_TYPE) #-----< Entrez2-db-id >-----# Entrez2_db_id = STR_VIS(name=u'Entrez2-db-id', mode=MODE_TYPE) #-----< Entrez2-field-id >-----# Entrez2_field_id = STR_VIS(name=u'Entrez2-field-id', mode=MODE_TYPE) #-----< Entrez2-link-id >-----# Entrez2_link_id = STR_VIS(name=u'Entrez2-link-id', mode=MODE_TYPE) #-----< Entrez2-id-list >-----# Entrez2_id_list = SEQ(name=u'Entrez2-id-list', mode=MODE_TYPE) _Entrez2_id_list_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_id_list_num = INT(name=u'num', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_id_list_uids = OCT_STR(name=u'uids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_id_list._cont = ASN1Dict([ (u'db', _Entrez2_id_list_db), (u'num', _Entrez2_id_list_num), (u'uids', _Entrez2_id_list_uids), ]) Entrez2_id_list._ext = None #-----< Entrez2-boolean-exp >-----# Entrez2_boolean_exp = SEQ(name=u'Entrez2-boolean-exp', mode=MODE_TYPE) _Entrez2_boolean_exp_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_boolean_exp_exp = SEQ_OF(name=u'exp', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_boolean_exp_exp__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-boolean-element'))) _Entrez2_boolean_exp_exp._cont = __Entrez2_boolean_exp_exp__item_ _Entrez2_boolean_exp_limits = SEQ(name=u'limits', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-limits')), opt=True) Entrez2_boolean_exp._cont = ASN1Dict([ (u'db', _Entrez2_boolean_exp_db), (u'exp', _Entrez2_boolean_exp_exp), (u'limits', _Entrez2_boolean_exp_limits), ]) Entrez2_boolean_exp._ext = None #-----< Entrez2-boolean-element >-----# Entrez2_boolean_element = CHOICE(name=u'Entrez2-boolean-element', mode=MODE_TYPE) _Entrez2_boolean_element_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_boolean_element_op = INT(name=u'op', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-operator'))) _Entrez2_boolean_element_term = SEQ(name=u'term', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-boolean-term'))) _Entrez2_boolean_element_ids = SEQ(name=u'ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id-list'))) _Entrez2_boolean_element_key = STR_VIS(name=u'key', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Entrez2_boolean_element._cont = ASN1Dict([ (u'str', _Entrez2_boolean_element_str), (u'op', _Entrez2_boolean_element_op), (u'term', _Entrez2_boolean_element_term), (u'ids', _Entrez2_boolean_element_ids), (u'key', _Entrez2_boolean_element_key), ]) Entrez2_boolean_element._ext = None #-----< Entrez2-boolean-term >-----# Entrez2_boolean_term = SEQ(name=u'Entrez2-boolean-term', mode=MODE_TYPE) _Entrez2_boolean_term_field = STR_VIS(name=u'field', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-id'))) _Entrez2_boolean_term_term = STR_VIS(name=u'term', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_boolean_term_term_count = INT(name=u'term-count', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_boolean_term_do_not_explode = BOOL(name=u'do-not-explode', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Entrez2_boolean_term_do_not_translate = BOOL(name=u'do-not-translate', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) Entrez2_boolean_term._cont = ASN1Dict([ (u'field', _Entrez2_boolean_term_field), (u'term', _Entrez2_boolean_term_term), (u'term-count', _Entrez2_boolean_term_term_count), (u'do-not-explode', _Entrez2_boolean_term_do_not_explode), (u'do-not-translate', _Entrez2_boolean_term_do_not_translate), ]) Entrez2_boolean_term._ext = None #-----< Entrez2-operator >-----# Entrez2_operator = INT(name=u'Entrez2-operator', mode=MODE_TYPE) Entrez2_operator._cont = ASN1Dict([(u'and', 1), (u'or', 2), (u'butnot', 3), (u'range', 4), (u'left-paren', 5), (u'right-paren', 6)]) #-----< Entrez2-request >-----# Entrez2_request = SEQ(name=u'Entrez2-request', mode=MODE_TYPE) _Entrez2_request_request = CHOICE(name=u'request', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'E2Request'))) _Entrez2_request_version = INT(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_request_tool = STR_VIS(name=u'tool', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_request_cookie = STR_VIS(name=u'cookie', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_request_use_history = BOOL(name=u'use-history', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) Entrez2_request._cont = ASN1Dict([ (u'request', _Entrez2_request_request), (u'version', _Entrez2_request_version), (u'tool', _Entrez2_request_tool), (u'cookie', _Entrez2_request_cookie), (u'use-history', _Entrez2_request_use_history), ]) Entrez2_request._ext = None #-----< E2Request >-----# E2Request = CHOICE(name=u'E2Request', mode=MODE_TYPE) _E2Request_get_info = NULL(name=u'get-info', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _E2Request_eval_boolean = SEQ(name=u'eval-boolean', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-eval-boolean'))) _E2Request_get_docsum = SEQ(name=u'get-docsum', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id-list'))) _E2Request_get_term_pos = SEQ(name=u'get-term-pos', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-term-query'))) _E2Request_get_term_list = SEQ(name=u'get-term-list', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-term-pos'))) _E2Request_get_term_hierarchy = SEQ(name=u'get-term-hierarchy', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-hier-query'))) _E2Request_get_links = SEQ(name=u'get-links', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-get-links'))) _E2Request_get_linked = SEQ(name=u'get-linked', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-get-links'))) _E2Request_get_link_counts = SEQ(name=u'get-link-counts', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id'))) E2Request._cont = ASN1Dict([ (u'get-info', _E2Request_get_info), (u'eval-boolean', _E2Request_eval_boolean), (u'get-docsum', _E2Request_get_docsum), (u'get-term-pos', _E2Request_get_term_pos), (u'get-term-list', _E2Request_get_term_list), (u'get-term-hierarchy', _E2Request_get_term_hierarchy), (u'get-links', _E2Request_get_links), (u'get-linked', _E2Request_get_linked), (u'get-link-counts', _E2Request_get_link_counts), ]) E2Request._ext = None #-----< Entrez2-eval-boolean >-----# Entrez2_eval_boolean = SEQ(name=u'Entrez2-eval-boolean', mode=MODE_TYPE) _Entrez2_eval_boolean_return_UIDs = BOOL(name=u'return-UIDs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Entrez2_eval_boolean_return_parse = BOOL(name=u'return-parse', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Entrez2_eval_boolean_query = SEQ(name=u'query', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-boolean-exp'))) Entrez2_eval_boolean._cont = ASN1Dict([ (u'return-UIDs', _Entrez2_eval_boolean_return_UIDs), (u'return-parse', _Entrez2_eval_boolean_return_parse), (u'query', _Entrez2_eval_boolean_query), ]) Entrez2_eval_boolean._ext = None #-----< Entrez2-dt-filter >-----# Entrez2_dt_filter = SEQ(name=u'Entrez2-dt-filter', mode=MODE_TYPE) _Entrez2_dt_filter_begin_date = INT(name=u'begin-date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-dt'))) _Entrez2_dt_filter_end_date = INT(name=u'end-date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-dt'))) _Entrez2_dt_filter_type_date = STR_VIS(name=u'type-date', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-id'))) Entrez2_dt_filter._cont = ASN1Dict([ (u'begin-date', _Entrez2_dt_filter_begin_date), (u'end-date', _Entrez2_dt_filter_end_date), (u'type-date', _Entrez2_dt_filter_type_date), ]) Entrez2_dt_filter._ext = None #-----< Entrez2-limits >-----# Entrez2_limits = SEQ(name=u'Entrez2-limits', mode=MODE_TYPE) _Entrez2_limits_filter_date = SEQ(name=u'filter-date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-dt-filter')), opt=True) _Entrez2_limits_max_UIDs = INT(name=u'max-UIDs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_limits_offset_UIDs = INT(name=u'offset-UIDs', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_limits._cont = ASN1Dict([ (u'filter-date', _Entrez2_limits_filter_date), (u'max-UIDs', _Entrez2_limits_max_UIDs), (u'offset-UIDs', _Entrez2_limits_offset_UIDs), ]) Entrez2_limits._ext = None #-----< Entrez2-id >-----# Entrez2_id = SEQ(name=u'Entrez2-id', mode=MODE_TYPE) _Entrez2_id_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_id_uid = INT(name=u'uid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Entrez2_id._cont = ASN1Dict([ (u'db', _Entrez2_id_db), (u'uid', _Entrez2_id_uid), ]) Entrez2_id._ext = None #-----< Entrez2-term-query >-----# Entrez2_term_query = SEQ(name=u'Entrez2-term-query', mode=MODE_TYPE) _Entrez2_term_query_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_term_query_field = STR_VIS(name=u'field', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-id'))) _Entrez2_term_query_term = STR_VIS(name=u'term', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Entrez2_term_query._cont = ASN1Dict([ (u'db', _Entrez2_term_query_db), (u'field', _Entrez2_term_query_field), (u'term', _Entrez2_term_query_term), ]) Entrez2_term_query._ext = None #-----< Entrez2-hier-query >-----# Entrez2_hier_query = SEQ(name=u'Entrez2-hier-query', mode=MODE_TYPE) _Entrez2_hier_query_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_hier_query_field = STR_VIS(name=u'field', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-id'))) _Entrez2_hier_query_term = STR_VIS(name=u'term', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_hier_query_txid = INT(name=u'txid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_hier_query._cont = ASN1Dict([ (u'db', _Entrez2_hier_query_db), (u'field', _Entrez2_hier_query_field), (u'term', _Entrez2_hier_query_term), (u'txid', _Entrez2_hier_query_txid), ]) Entrez2_hier_query._ext = None #-----< Entrez2-term-pos >-----# Entrez2_term_pos = SEQ(name=u'Entrez2-term-pos', mode=MODE_TYPE) _Entrez2_term_pos_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_term_pos_field = STR_VIS(name=u'field', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-id'))) _Entrez2_term_pos_first_term_pos = INT(name=u'first-term-pos', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_term_pos_number_of_terms = INT(name=u'number-of-terms', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_term_pos._cont = ASN1Dict([ (u'db', _Entrez2_term_pos_db), (u'field', _Entrez2_term_pos_field), (u'first-term-pos', _Entrez2_term_pos_first_term_pos), (u'number-of-terms', _Entrez2_term_pos_number_of_terms), ]) Entrez2_term_pos._ext = None #-----< Entrez2-get-links >-----# Entrez2_get_links = SEQ(name=u'Entrez2-get-links', mode=MODE_TYPE) _Entrez2_get_links_uids = SEQ(name=u'uids', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id-list'))) _Entrez2_get_links_linktype = STR_VIS(name=u'linktype', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-id'))) _Entrez2_get_links_max_UIDS = INT(name=u'max-UIDS', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_get_links_count_only = BOOL(name=u'count-only', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_get_links_parents_persist = BOOL(name=u'parents-persist', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_get_links._cont = ASN1Dict([ (u'uids', _Entrez2_get_links_uids), (u'linktype', _Entrez2_get_links_linktype), (u'max-UIDS', _Entrez2_get_links_max_UIDS), (u'count-only', _Entrez2_get_links_count_only), (u'parents-persist', _Entrez2_get_links_parents_persist), ]) Entrez2_get_links._ext = None #-----< Entrez2-reply >-----# Entrez2_reply = SEQ(name=u'Entrez2-reply', mode=MODE_TYPE) _Entrez2_reply_reply = CHOICE(name=u'reply', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'E2Reply'))) _Entrez2_reply_dt = INT(name=u'dt', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-dt'))) _Entrez2_reply_server = STR_VIS(name=u'server', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_reply_msg = STR_VIS(name=u'msg', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_reply_key = STR_VIS(name=u'key', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_reply_cookie = STR_VIS(name=u'cookie', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_reply._cont = ASN1Dict([ (u'reply', _Entrez2_reply_reply), (u'dt', _Entrez2_reply_dt), (u'server', _Entrez2_reply_server), (u'msg', _Entrez2_reply_msg), (u'key', _Entrez2_reply_key), (u'cookie', _Entrez2_reply_cookie), ]) Entrez2_reply._ext = None #-----< E2Reply >-----# E2Reply = CHOICE(name=u'E2Reply', mode=MODE_TYPE) _E2Reply_error = STR_VIS(name=u'error', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _E2Reply_get_info = SEQ(name=u'get-info', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-info'))) _E2Reply_eval_boolean = SEQ(name=u'eval-boolean', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-boolean-reply'))) _E2Reply_get_docsum = SEQ(name=u'get-docsum', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-docsum-list'))) _E2Reply_get_term_pos = INT(name=u'get-term-pos', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _E2Reply_get_term_list = SEQ(name=u'get-term-list', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-term-list'))) _E2Reply_get_term_hierarchy = SEQ(name=u'get-term-hierarchy', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-hier-node'))) _E2Reply_get_links = SEQ(name=u'get-links', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-set'))) _E2Reply_get_linked = SEQ(name=u'get-linked', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id-list'))) _E2Reply_get_link_counts = SEQ(name=u'get-link-counts', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-count-list'))) E2Reply._cont = ASN1Dict([ (u'error', _E2Reply_error), (u'get-info', _E2Reply_get_info), (u'eval-boolean', _E2Reply_eval_boolean), (u'get-docsum', _E2Reply_get_docsum), (u'get-term-pos', _E2Reply_get_term_pos), (u'get-term-list', _E2Reply_get_term_list), (u'get-term-hierarchy', _E2Reply_get_term_hierarchy), (u'get-links', _E2Reply_get_links), (u'get-linked', _E2Reply_get_linked), (u'get-link-counts', _E2Reply_get_link_counts), ]) E2Reply._ext = None #-----< Entrez2-info >-----# Entrez2_info = SEQ(name=u'Entrez2-info', mode=MODE_TYPE) _Entrez2_info_db_count = INT(name=u'db-count', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_info_build_date = INT(name=u'build-date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-dt'))) _Entrez2_info_db_info = SEQ_OF(name=u'db-info', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_info_db_info__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-info'))) _Entrez2_info_db_info._cont = __Entrez2_info_db_info__item_ Entrez2_info._cont = ASN1Dict([ (u'db-count', _Entrez2_info_db_count), (u'build-date', _Entrez2_info_build_date), (u'db-info', _Entrez2_info_db_info), ]) Entrez2_info._ext = None #-----< Entrez2-db-info >-----# Entrez2_db_info = SEQ(name=u'Entrez2-db-info', mode=MODE_TYPE) _Entrez2_db_info_db_name = STR_VIS(name=u'db-name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_db_info_db_menu = STR_VIS(name=u'db-menu', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_db_info_db_descr = STR_VIS(name=u'db-descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_db_info_doc_count = INT(name=u'doc-count', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_db_info_field_count = INT(name=u'field-count', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_db_info_fields = SEQ_OF(name=u'fields', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_db_info_fields__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-info'))) _Entrez2_db_info_fields._cont = __Entrez2_db_info_fields__item_ _Entrez2_db_info_link_count = INT(name=u'link-count', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_db_info_links = SEQ_OF(name=u'links', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_db_info_links__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-info'))) _Entrez2_db_info_links._cont = __Entrez2_db_info_links__item_ _Entrez2_db_info_docsum_field_count = INT(name=u'docsum-field-count', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_db_info_docsum_fields = SEQ_OF(name=u'docsum-fields', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_db_info_docsum_fields__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-docsum-field-info'))) _Entrez2_db_info_docsum_fields._cont = __Entrez2_db_info_docsum_fields__item_ Entrez2_db_info._cont = ASN1Dict([ (u'db-name', _Entrez2_db_info_db_name), (u'db-menu', _Entrez2_db_info_db_menu), (u'db-descr', _Entrez2_db_info_db_descr), (u'doc-count', _Entrez2_db_info_doc_count), (u'field-count', _Entrez2_db_info_field_count), (u'fields', _Entrez2_db_info_fields), (u'link-count', _Entrez2_db_info_link_count), (u'links', _Entrez2_db_info_links), (u'docsum-field-count', _Entrez2_db_info_docsum_field_count), (u'docsum-fields', _Entrez2_db_info_docsum_fields), ]) Entrez2_db_info._ext = None #-----< Entrez2-field-info >-----# Entrez2_field_info = SEQ(name=u'Entrez2-field-info', mode=MODE_TYPE) _Entrez2_field_info_field_name = STR_VIS(name=u'field-name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-field-id'))) _Entrez2_field_info_field_menu = STR_VIS(name=u'field-menu', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_field_info_field_descr = STR_VIS(name=u'field-descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_field_info_term_count = INT(name=u'term-count', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_field_info_is_date = BOOL(name=u'is-date', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_field_info_is_numerical = BOOL(name=u'is-numerical', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_field_info_single_token = BOOL(name=u'single-token', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_field_info_hierarchy_avail = BOOL(name=u'hierarchy-avail', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_field_info_is_rangable = BOOL(name=u'is-rangable', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_field_info_is_truncatable = BOOL(name=u'is-truncatable', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_field_info._cont = ASN1Dict([ (u'field-name', _Entrez2_field_info_field_name), (u'field-menu', _Entrez2_field_info_field_menu), (u'field-descr', _Entrez2_field_info_field_descr), (u'term-count', _Entrez2_field_info_term_count), (u'is-date', _Entrez2_field_info_is_date), (u'is-numerical', _Entrez2_field_info_is_numerical), (u'single-token', _Entrez2_field_info_single_token), (u'hierarchy-avail', _Entrez2_field_info_hierarchy_avail), (u'is-rangable', _Entrez2_field_info_is_rangable), (u'is-truncatable', _Entrez2_field_info_is_truncatable), ]) Entrez2_field_info._ext = None #-----< Entrez2-link-info >-----# Entrez2_link_info = SEQ(name=u'Entrez2-link-info', mode=MODE_TYPE) _Entrez2_link_info_link_name = STR_VIS(name=u'link-name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-id'))) _Entrez2_link_info_link_menu = STR_VIS(name=u'link-menu', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_link_info_link_descr = STR_VIS(name=u'link-descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_link_info_db_to = STR_VIS(name=u'db-to', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-db-id'))) _Entrez2_link_info_data_size = INT(name=u'data-size', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_link_info._cont = ASN1Dict([ (u'link-name', _Entrez2_link_info_link_name), (u'link-menu', _Entrez2_link_info_link_menu), (u'link-descr', _Entrez2_link_info_link_descr), (u'db-to', _Entrez2_link_info_db_to), (u'data-size', _Entrez2_link_info_data_size), ]) Entrez2_link_info._ext = None #-----< Entrez2-docsum-field-type >-----# Entrez2_docsum_field_type = INT(name=u'Entrez2-docsum-field-type', mode=MODE_TYPE) Entrez2_docsum_field_type._cont = ASN1Dict([(u'string', 1), (u'int', 2), (u'float', 3), (u'date-pubmed', 4)]) #-----< Entrez2-docsum-field-info >-----# Entrez2_docsum_field_info = SEQ(name=u'Entrez2-docsum-field-info', mode=MODE_TYPE) _Entrez2_docsum_field_info_field_name = STR_VIS(name=u'field-name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_docsum_field_info_field_description = STR_VIS(name=u'field-description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_docsum_field_info_field_type = INT(name=u'field-type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-docsum-field-type'))) Entrez2_docsum_field_info._cont = ASN1Dict([ (u'field-name', _Entrez2_docsum_field_info_field_name), (u'field-description', _Entrez2_docsum_field_info_field_description), (u'field-type', _Entrez2_docsum_field_info_field_type), ]) Entrez2_docsum_field_info._ext = None #-----< Entrez2-boolean-reply >-----# Entrez2_boolean_reply = SEQ(name=u'Entrez2-boolean-reply', mode=MODE_TYPE) _Entrez2_boolean_reply_count = INT(name=u'count', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_boolean_reply_uids = SEQ(name=u'uids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id-list')), opt=True) _Entrez2_boolean_reply_query = SEQ(name=u'query', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-boolean-exp')), opt=True) Entrez2_boolean_reply._cont = ASN1Dict([ (u'count', _Entrez2_boolean_reply_count), (u'uids', _Entrez2_boolean_reply_uids), (u'query', _Entrez2_boolean_reply_query), ]) Entrez2_boolean_reply._ext = None #-----< Entrez2-docsum-list >-----# Entrez2_docsum_list = SEQ(name=u'Entrez2-docsum-list', mode=MODE_TYPE) _Entrez2_docsum_list_count = INT(name=u'count', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_docsum_list_list = SEQ_OF(name=u'list', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_docsum_list_list__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-docsum'))) _Entrez2_docsum_list_list._cont = __Entrez2_docsum_list_list__item_ Entrez2_docsum_list._cont = ASN1Dict([ (u'count', _Entrez2_docsum_list_count), (u'list', _Entrez2_docsum_list_list), ]) Entrez2_docsum_list._ext = None #-----< Entrez2-docsum >-----# Entrez2_docsum = SEQ(name=u'Entrez2-docsum', mode=MODE_TYPE) _Entrez2_docsum_uid = INT(name=u'uid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_docsum_docsum_data = SEQ_OF(name=u'docsum-data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_docsum_docsum_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-docsum-data'))) _Entrez2_docsum_docsum_data._cont = __Entrez2_docsum_docsum_data__item_ Entrez2_docsum._cont = ASN1Dict([ (u'uid', _Entrez2_docsum_uid), (u'docsum-data', _Entrez2_docsum_docsum_data), ]) Entrez2_docsum._ext = None #-----< Entrez2-docsum-data >-----# Entrez2_docsum_data = SEQ(name=u'Entrez2-docsum-data', mode=MODE_TYPE) _Entrez2_docsum_data_field_name = STR_VIS(name=u'field-name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_docsum_data_field_value = STR_VIS(name=u'field-value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Entrez2_docsum_data._cont = ASN1Dict([ (u'field-name', _Entrez2_docsum_data_field_name), (u'field-value', _Entrez2_docsum_data_field_value), ]) Entrez2_docsum_data._ext = None #-----< Entrez2-term-list >-----# Entrez2_term_list = SEQ(name=u'Entrez2-term-list', mode=MODE_TYPE) _Entrez2_term_list_pos = INT(name=u'pos', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_term_list_num = INT(name=u'num', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_term_list_list = SEQ_OF(name=u'list', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_term_list_list__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-term'))) _Entrez2_term_list_list._cont = __Entrez2_term_list_list__item_ Entrez2_term_list._cont = ASN1Dict([ (u'pos', _Entrez2_term_list_pos), (u'num', _Entrez2_term_list_num), (u'list', _Entrez2_term_list_list), ]) Entrez2_term_list._ext = None #-----< Entrez2-term >-----# Entrez2_term = SEQ(name=u'Entrez2-term', mode=MODE_TYPE) _Entrez2_term_term = STR_VIS(name=u'term', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_term_txid = INT(name=u'txid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_term_count = INT(name=u'count', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_term_is_leaf_node = BOOL(name=u'is-leaf-node', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_term._cont = ASN1Dict([ (u'term', _Entrez2_term_term), (u'txid', _Entrez2_term_txid), (u'count', _Entrez2_term_count), (u'is-leaf-node', _Entrez2_term_is_leaf_node), ]) Entrez2_term._ext = None #-----< Entrez2-hier-node >-----# Entrez2_hier_node = SEQ(name=u'Entrez2-hier-node', mode=MODE_TYPE) _Entrez2_hier_node_cannonical_form = STR_VIS(name=u'cannonical-form', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_hier_node_lineage_count = INT(name=u'lineage-count', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_hier_node_lineage = SEQ_OF(name=u'lineage', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrez2_hier_node_lineage__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-term'))) _Entrez2_hier_node_lineage._cont = __Entrez2_hier_node_lineage__item_ _Entrez2_hier_node_child_count = INT(name=u'child-count', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_hier_node_children = SEQ_OF(name=u'children', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_hier_node_children__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-term'))) _Entrez2_hier_node_children._cont = __Entrez2_hier_node_children__item_ _Entrez2_hier_node_is_ambiguous = BOOL(name=u'is-ambiguous', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_hier_node._cont = ASN1Dict([ (u'cannonical-form', _Entrez2_hier_node_cannonical_form), (u'lineage-count', _Entrez2_hier_node_lineage_count), (u'lineage', _Entrez2_hier_node_lineage), (u'child-count', _Entrez2_hier_node_child_count), (u'children', _Entrez2_hier_node_children), (u'is-ambiguous', _Entrez2_hier_node_is_ambiguous), ]) Entrez2_hier_node._ext = None #-----< Entrez2-link-set >-----# Entrez2_link_set = SEQ(name=u'Entrez2-link-set', mode=MODE_TYPE) _Entrez2_link_set_ids = SEQ(name=u'ids', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-id-list'))) _Entrez2_link_set_data_size = INT(name=u'data-size', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez2_link_set_data = OCT_STR(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez2_link_set._cont = ASN1Dict([ (u'ids', _Entrez2_link_set_ids), (u'data-size', _Entrez2_link_set_data_size), (u'data', _Entrez2_link_set_data), ]) Entrez2_link_set._ext = None #-----< Entrez2-link-count-list >-----# Entrez2_link_count_list = SEQ(name=u'Entrez2-link-count-list', mode=MODE_TYPE) _Entrez2_link_count_list_link_type_count = INT(name=u'link-type-count', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrez2_link_count_list_links = SEQ_OF(name=u'links', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Entrez2_link_count_list_links__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-count'))) _Entrez2_link_count_list_links._cont = __Entrez2_link_count_list_links__item_ Entrez2_link_count_list._cont = ASN1Dict([ (u'link-type-count', _Entrez2_link_count_list_link_type_count), (u'links', _Entrez2_link_count_list_links), ]) Entrez2_link_count_list._ext = None #-----< Entrez2-link-count >-----# Entrez2_link_count = SEQ(name=u'Entrez2-link-count', mode=MODE_TYPE) _Entrez2_link_count_link_type = STR_VIS(name=u'link-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrez2', 'Entrez2-link-id'))) _Entrez2_link_count_link_count = INT(name=u'link-count', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Entrez2_link_count._cont = ASN1Dict([ (u'link-type', _Entrez2_link_count_link_type), (u'link-count', _Entrez2_link_count_link_count), ]) Entrez2_link_count._ext = None _all_ = [ Entrez2_dt, Entrez2_db_id, Entrez2_field_id, Entrez2_link_id, _Entrez2_id_list_db, _Entrez2_id_list_num, _Entrez2_id_list_uids, Entrez2_id_list, _Entrez2_boolean_exp_db, __Entrez2_boolean_exp_exp__item_, _Entrez2_boolean_exp_exp, _Entrez2_boolean_exp_limits, Entrez2_boolean_exp, _Entrez2_boolean_element_str, _Entrez2_boolean_element_op, _Entrez2_boolean_element_term, _Entrez2_boolean_element_ids, _Entrez2_boolean_element_key, Entrez2_boolean_element, _Entrez2_boolean_term_field, _Entrez2_boolean_term_term, _Entrez2_boolean_term_term_count, _Entrez2_boolean_term_do_not_explode, _Entrez2_boolean_term_do_not_translate, Entrez2_boolean_term, Entrez2_operator, _Entrez2_request_request, _Entrez2_request_version, _Entrez2_request_tool, _Entrez2_request_cookie, _Entrez2_request_use_history, Entrez2_request, _E2Request_get_info, _E2Request_eval_boolean, _E2Request_get_docsum, _E2Request_get_term_pos, _E2Request_get_term_list, _E2Request_get_term_hierarchy, _E2Request_get_links, _E2Request_get_linked, _E2Request_get_link_counts, E2Request, _Entrez2_eval_boolean_return_UIDs, _Entrez2_eval_boolean_return_parse, _Entrez2_eval_boolean_query, Entrez2_eval_boolean, _Entrez2_dt_filter_begin_date, _Entrez2_dt_filter_end_date, _Entrez2_dt_filter_type_date, Entrez2_dt_filter, _Entrez2_limits_filter_date, _Entrez2_limits_max_UIDs, _Entrez2_limits_offset_UIDs, Entrez2_limits, _Entrez2_id_db, _Entrez2_id_uid, Entrez2_id, _Entrez2_term_query_db, _Entrez2_term_query_field, _Entrez2_term_query_term, Entrez2_term_query, _Entrez2_hier_query_db, _Entrez2_hier_query_field, _Entrez2_hier_query_term, _Entrez2_hier_query_txid, Entrez2_hier_query, _Entrez2_term_pos_db, _Entrez2_term_pos_field, _Entrez2_term_pos_first_term_pos, _Entrez2_term_pos_number_of_terms, Entrez2_term_pos, _Entrez2_get_links_uids, _Entrez2_get_links_linktype, _Entrez2_get_links_max_UIDS, _Entrez2_get_links_count_only, _Entrez2_get_links_parents_persist, Entrez2_get_links, _Entrez2_reply_reply, _Entrez2_reply_dt, _Entrez2_reply_server, _Entrez2_reply_msg, _Entrez2_reply_key, _Entrez2_reply_cookie, Entrez2_reply, _E2Reply_error, _E2Reply_get_info, _E2Reply_eval_boolean, _E2Reply_get_docsum, _E2Reply_get_term_pos, _E2Reply_get_term_list, _E2Reply_get_term_hierarchy, _E2Reply_get_links, _E2Reply_get_linked, _E2Reply_get_link_counts, E2Reply, _Entrez2_info_db_count, _Entrez2_info_build_date, __Entrez2_info_db_info__item_, _Entrez2_info_db_info, Entrez2_info, _Entrez2_db_info_db_name, _Entrez2_db_info_db_menu, _Entrez2_db_info_db_descr, _Entrez2_db_info_doc_count, _Entrez2_db_info_field_count, __Entrez2_db_info_fields__item_, _Entrez2_db_info_fields, _Entrez2_db_info_link_count, __Entrez2_db_info_links__item_, _Entrez2_db_info_links, _Entrez2_db_info_docsum_field_count, __Entrez2_db_info_docsum_fields__item_, _Entrez2_db_info_docsum_fields, Entrez2_db_info, _Entrez2_field_info_field_name, _Entrez2_field_info_field_menu, _Entrez2_field_info_field_descr, _Entrez2_field_info_term_count, _Entrez2_field_info_is_date, _Entrez2_field_info_is_numerical, _Entrez2_field_info_single_token, _Entrez2_field_info_hierarchy_avail, _Entrez2_field_info_is_rangable, _Entrez2_field_info_is_truncatable, Entrez2_field_info, _Entrez2_link_info_link_name, _Entrez2_link_info_link_menu, _Entrez2_link_info_link_descr, _Entrez2_link_info_db_to, _Entrez2_link_info_data_size, Entrez2_link_info, Entrez2_docsum_field_type, _Entrez2_docsum_field_info_field_name, _Entrez2_docsum_field_info_field_description, _Entrez2_docsum_field_info_field_type, Entrez2_docsum_field_info, _Entrez2_boolean_reply_count, _Entrez2_boolean_reply_uids, _Entrez2_boolean_reply_query, Entrez2_boolean_reply, _Entrez2_docsum_list_count, __Entrez2_docsum_list_list__item_, _Entrez2_docsum_list_list, Entrez2_docsum_list, _Entrez2_docsum_uid, __Entrez2_docsum_docsum_data__item_, _Entrez2_docsum_docsum_data, Entrez2_docsum, _Entrez2_docsum_data_field_name, _Entrez2_docsum_data_field_value, Entrez2_docsum_data, _Entrez2_term_list_pos, _Entrez2_term_list_num, __Entrez2_term_list_list__item_, _Entrez2_term_list_list, Entrez2_term_list, _Entrez2_term_term, _Entrez2_term_txid, _Entrez2_term_count, _Entrez2_term_is_leaf_node, Entrez2_term, _Entrez2_hier_node_cannonical_form, _Entrez2_hier_node_lineage_count, __Entrez2_hier_node_lineage__item_, _Entrez2_hier_node_lineage, _Entrez2_hier_node_child_count, __Entrez2_hier_node_children__item_, _Entrez2_hier_node_children, _Entrez2_hier_node_is_ambiguous, Entrez2_hier_node, _Entrez2_link_set_ids, _Entrez2_link_set_data_size, _Entrez2_link_set_data, Entrez2_link_set, _Entrez2_link_count_list_link_type_count, __Entrez2_link_count_list_links__item_, _Entrez2_link_count_list_links, Entrez2_link_count_list, _Entrez2_link_count_link_type, _Entrez2_link_count_link_count, Entrez2_link_count, ] class NCBI_Entrezgene: _name_ = u'NCBI-Entrezgene' _oid_ = [] _obj_ = [ u'Entrezgene', u'Entrezgene-Set', u'Gene-track', u'Gene-source', u'Gene-commentary', u'Other-source', u'Maps', u'Xtra-Terms', ] _type_ = [ u'Entrezgene', u'Entrezgene-Set', u'Gene-track', u'Gene-source', u'Gene-commentary', u'Other-source', u'Maps', u'Xtra-Terms', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Entrezgene >-----# Entrezgene = SEQ(name=u'Entrezgene', mode=MODE_TYPE) _Entrezgene_track_info = SEQ(name=u'track-info', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-track')), opt=True) _Entrezgene_type = INT(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Entrezgene_type._cont = ASN1Dict([(u'unknown', 0), (u'tRNA', 1), (u'rRNA', 2), (u'snRNA', 3), (u'scRNA', 4), (u'snoRNA', 5), (u'protein-coding', 6), (u'pseudo', 7), (u'transposon', 8), (u'miscRNA', 9), (u'ncRNA', 10), (u'biological-region', 11), (u'other', 255)]) _Entrezgene_source = SEQ(name=u'source', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'BioSource'))) _Entrezgene_gene = SEQ(name=u'gene', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Gene', 'Gene-ref'))) _Entrezgene_prot = SEQ(name=u'prot', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Protein', 'Prot-ref')), opt=True) _Entrezgene_rna = SEQ(name=u'rna', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-RNA', 'RNA-ref')), opt=True) _Entrezgene_summary = STR_VIS(name=u'summary', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrezgene_location = SEQ_OF(name=u'location', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_location__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Maps'))) _Entrezgene_location._cont = __Entrezgene_location__item_ _Entrezgene_gene_source = SEQ(name=u'gene-source', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-source')), opt=True) _Entrezgene_locus = SEQ_OF(name=u'locus', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_locus__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Entrezgene_locus._cont = __Entrezgene_locus__item_ _Entrezgene_properties = SEQ_OF(name=u'properties', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_properties__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Entrezgene_properties._cont = __Entrezgene_properties__item_ _Entrezgene_refgene = SEQ_OF(name=u'refgene', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_refgene__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Entrezgene_refgene._cont = __Entrezgene_refgene__item_ _Entrezgene_homology = SEQ_OF(name=u'homology', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_homology__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Entrezgene_homology._cont = __Entrezgene_homology__item_ _Entrezgene_comments = SEQ_OF(name=u'comments', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_comments__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Entrezgene_comments._cont = __Entrezgene_comments__item_ _Entrezgene_unique_keys = SEQ_OF(name=u'unique-keys', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_unique_keys__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Entrezgene_unique_keys._cont = __Entrezgene_unique_keys__item_ _Entrezgene_xtra_index_terms = SEQ_OF(name=u'xtra-index-terms', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_xtra_index_terms__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Entrezgene_xtra_index_terms._cont = __Entrezgene_xtra_index_terms__item_ _Entrezgene_xtra_properties = SEQ_OF(name=u'xtra-properties', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_xtra_properties__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Xtra-Terms'))) _Entrezgene_xtra_properties._cont = __Entrezgene_xtra_properties__item_ _Entrezgene_xtra_iq = SEQ_OF(name=u'xtra-iq', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_xtra_iq__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Xtra-Terms'))) _Entrezgene_xtra_iq._cont = __Entrezgene_xtra_iq__item_ _Entrezgene_non_unique_keys = SEQ_OF(name=u'non-unique-keys', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Entrezgene_non_unique_keys__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Entrezgene_non_unique_keys._cont = __Entrezgene_non_unique_keys__item_ Entrezgene._cont = ASN1Dict([ (u'track-info', _Entrezgene_track_info), (u'type', _Entrezgene_type), (u'source', _Entrezgene_source), (u'gene', _Entrezgene_gene), (u'prot', _Entrezgene_prot), (u'rna', _Entrezgene_rna), (u'summary', _Entrezgene_summary), (u'location', _Entrezgene_location), (u'gene-source', _Entrezgene_gene_source), (u'locus', _Entrezgene_locus), (u'properties', _Entrezgene_properties), (u'refgene', _Entrezgene_refgene), (u'homology', _Entrezgene_homology), (u'comments', _Entrezgene_comments), (u'unique-keys', _Entrezgene_unique_keys), (u'xtra-index-terms', _Entrezgene_xtra_index_terms), (u'xtra-properties', _Entrezgene_xtra_properties), (u'xtra-iq', _Entrezgene_xtra_iq), (u'non-unique-keys', _Entrezgene_non_unique_keys), ]) Entrezgene._ext = None #-----< Entrezgene-Set >-----# Entrezgene_Set = SET_OF(name=u'Entrezgene-Set', mode=MODE_TYPE) _Entrezgene_Set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Entrezgene'))) Entrezgene_Set._cont = _Entrezgene_Set__item_ #-----< Gene-track >-----# Gene_track = SEQ(name=u'Gene-track', mode=MODE_TYPE) _Gene_track_geneid = INT(name=u'geneid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Gene_track_status = INT(name=u'status', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _Gene_track_status._cont = ASN1Dict([(u'live', 0), (u'secondary', 1), (u'discontinued', 2)]) _Gene_track_current_id = SEQ_OF(name=u'current-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_track_current_id__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Gene_track_current_id._cont = __Gene_track_current_id__item_ _Gene_track_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Gene_track_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Gene_track_discontinue_date = CHOICE(name=u'discontinue-date', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) Gene_track._cont = ASN1Dict([ (u'geneid', _Gene_track_geneid), (u'status', _Gene_track_status), (u'current-id', _Gene_track_current_id), (u'create-date', _Gene_track_create_date), (u'update-date', _Gene_track_update_date), (u'discontinue-date', _Gene_track_discontinue_date), ]) Gene_track._ext = None #-----< Gene-source >-----# Gene_source = SEQ(name=u'Gene-source', mode=MODE_TYPE) _Gene_source_src = STR_VIS(name=u'src', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Gene_source_src_int = INT(name=u'src-int', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_source_src_str1 = STR_VIS(name=u'src-str1', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_source_src_str2 = STR_VIS(name=u'src-str2', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_source_gene_display = BOOL(name=u'gene-display', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Gene_source_locus_display = BOOL(name=u'locus-display', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Gene_source_extra_terms = BOOL(name=u'extra-terms', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) Gene_source._cont = ASN1Dict([ (u'src', _Gene_source_src), (u'src-int', _Gene_source_src_int), (u'src-str1', _Gene_source_src_str1), (u'src-str2', _Gene_source_src_str2), (u'gene-display', _Gene_source_gene_display), (u'locus-display', _Gene_source_locus_display), (u'extra-terms', _Gene_source_extra_terms), ]) Gene_source._ext = None #-----< Gene-commentary >-----# Gene_commentary = SEQ(name=u'Gene-commentary', mode=MODE_TYPE) _Gene_commentary_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Gene_commentary_type._cont = ASN1Dict([(u'genomic', 1), (u'pre-RNA', 2), (u'mRNA', 3), (u'rRNA', 4), (u'tRNA', 5), (u'snRNA', 6), (u'scRNA', 7), (u'peptide', 8), (u'other-genetic', 9), (u'genomic-mRNA', 10), (u'cRNA', 11), (u'mature-peptide', 12), (u'pre-protein', 13), (u'miscRNA', 14), (u'snoRNA', 15), (u'property', 16), (u'reference', 17), (u'generif', 18), (u'phenotype', 19), (u'complex', 20), (u'compound', 21), (u'ncRNA', 22), (u'gene-group', 23), (u'assembly', 24), (u'assembly-unit', 25), (u'comment', 254), (u'other', 255)]) _Gene_commentary_heading = STR_VIS(name=u'heading', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_commentary_label = STR_VIS(name=u'label', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_commentary_text = STR_VIS(name=u'text', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_commentary_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_commentary_version = INT(name=u'version', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_commentary_xtra_properties = SEQ_OF(name=u'xtra-properties', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_xtra_properties__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Xtra-Terms'))) _Gene_commentary_xtra_properties._cont = __Gene_commentary_xtra_properties__item_ _Gene_commentary_refs = SEQ_OF(name=u'refs', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_refs__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Gene_commentary_refs._cont = __Gene_commentary_refs__item_ _Gene_commentary_source = SEQ_OF(name=u'source', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_source__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Other-source'))) _Gene_commentary_source._cont = __Gene_commentary_source__item_ _Gene_commentary_genomic_coords = SEQ_OF(name=u'genomic-coords', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_genomic_coords__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Gene_commentary_genomic_coords._cont = __Gene_commentary_genomic_coords__item_ _Gene_commentary_seqs = SEQ_OF(name=u'seqs', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_seqs__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Gene_commentary_seqs._cont = __Gene_commentary_seqs__item_ _Gene_commentary_products = SEQ_OF(name=u'products', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_products__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Gene_commentary_products._cont = __Gene_commentary_products__item_ _Gene_commentary_properties = SEQ_OF(name=u'properties', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_properties__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Gene_commentary_properties._cont = __Gene_commentary_properties__item_ _Gene_commentary_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_commentary_comment__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Entrezgene', 'Gene-commentary'))) _Gene_commentary_comment._cont = __Gene_commentary_comment__item_ _Gene_commentary_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Gene_commentary_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Gene_commentary_rna = SEQ(name=u'rna', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-RNA', 'RNA-ref')), opt=True) Gene_commentary._cont = ASN1Dict([ (u'type', _Gene_commentary_type), (u'heading', _Gene_commentary_heading), (u'label', _Gene_commentary_label), (u'text', _Gene_commentary_text), (u'accession', _Gene_commentary_accession), (u'version', _Gene_commentary_version), (u'xtra-properties', _Gene_commentary_xtra_properties), (u'refs', _Gene_commentary_refs), (u'source', _Gene_commentary_source), (u'genomic-coords', _Gene_commentary_genomic_coords), (u'seqs', _Gene_commentary_seqs), (u'products', _Gene_commentary_products), (u'properties', _Gene_commentary_properties), (u'comment', _Gene_commentary_comment), (u'create-date', _Gene_commentary_create_date), (u'update-date', _Gene_commentary_update_date), (u'rna', _Gene_commentary_rna), ]) Gene_commentary._ext = None #-----< Other-source >-----# Other_source = SEQ(name=u'Other-source', mode=MODE_TYPE) _Other_source_src = SEQ(name=u'src', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag')), opt=True) _Other_source_pre_text = STR_VIS(name=u'pre-text', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Other_source_anchor = STR_VIS(name=u'anchor', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Other_source_url = STR_VIS(name=u'url', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Other_source_post_text = STR_VIS(name=u'post-text', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Other_source._cont = ASN1Dict([ (u'src', _Other_source_src), (u'pre-text', _Other_source_pre_text), (u'anchor', _Other_source_anchor), (u'url', _Other_source_url), (u'post-text', _Other_source_post_text), ]) Other_source._ext = None #-----< Maps >-----# Maps = SEQ(name=u'Maps', mode=MODE_TYPE) _Maps_display_str = STR_VIS(name=u'display-str', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Maps_method = CHOICE(name=u'method', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Maps_method_proxy = STR_VIS(name=u'proxy', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Maps_method_map_type = ENUM(name=u'map-type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Maps_method_map_type._cont = ASN1Dict([(u'cyto', 0), (u'bp', 1), (u'cM', 2), (u'cR', 3), (u'min', 4)]) __Maps_method_map_type._ext = None _Maps_method._cont = ASN1Dict([ (u'proxy', __Maps_method_proxy), (u'map-type', __Maps_method_map_type), ]) _Maps_method._ext = None Maps._cont = ASN1Dict([ (u'display-str', _Maps_display_str), (u'method', _Maps_method), ]) Maps._ext = None #-----< Xtra-Terms >-----# Xtra_Terms = SEQ(name=u'Xtra-Terms', mode=MODE_TYPE) _Xtra_Terms_tag = STR_VIS(name=u'tag', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Xtra_Terms_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Xtra_Terms._cont = ASN1Dict([ (u'tag', _Xtra_Terms_tag), (u'value', _Xtra_Terms_value), ]) Xtra_Terms._ext = None _all_ = [ _Entrezgene_track_info, _Entrezgene_type, _Entrezgene_source, _Entrezgene_gene, _Entrezgene_prot, _Entrezgene_rna, _Entrezgene_summary, __Entrezgene_location__item_, _Entrezgene_location, _Entrezgene_gene_source, __Entrezgene_locus__item_, _Entrezgene_locus, __Entrezgene_properties__item_, _Entrezgene_properties, __Entrezgene_refgene__item_, _Entrezgene_refgene, __Entrezgene_homology__item_, _Entrezgene_homology, __Entrezgene_comments__item_, _Entrezgene_comments, __Entrezgene_unique_keys__item_, _Entrezgene_unique_keys, __Entrezgene_xtra_index_terms__item_, _Entrezgene_xtra_index_terms, __Entrezgene_xtra_properties__item_, _Entrezgene_xtra_properties, __Entrezgene_xtra_iq__item_, _Entrezgene_xtra_iq, __Entrezgene_non_unique_keys__item_, _Entrezgene_non_unique_keys, Entrezgene, _Entrezgene_Set__item_, Entrezgene_Set, _Gene_track_geneid, _Gene_track_status, __Gene_track_current_id__item_, _Gene_track_current_id, _Gene_track_create_date, _Gene_track_update_date, _Gene_track_discontinue_date, Gene_track, _Gene_source_src, _Gene_source_src_int, _Gene_source_src_str1, _Gene_source_src_str2, _Gene_source_gene_display, _Gene_source_locus_display, _Gene_source_extra_terms, Gene_source, _Gene_commentary_type, _Gene_commentary_heading, _Gene_commentary_label, _Gene_commentary_text, _Gene_commentary_accession, _Gene_commentary_version, __Gene_commentary_xtra_properties__item_, _Gene_commentary_xtra_properties, __Gene_commentary_refs__item_, _Gene_commentary_refs, __Gene_commentary_source__item_, _Gene_commentary_source, __Gene_commentary_genomic_coords__item_, _Gene_commentary_genomic_coords, __Gene_commentary_seqs__item_, _Gene_commentary_seqs, __Gene_commentary_products__item_, _Gene_commentary_products, __Gene_commentary_properties__item_, _Gene_commentary_properties, __Gene_commentary_comment__item_, _Gene_commentary_comment, _Gene_commentary_create_date, _Gene_commentary_update_date, _Gene_commentary_rna, Gene_commentary, _Other_source_src, _Other_source_pre_text, _Other_source_anchor, _Other_source_url, _Other_source_post_text, Other_source, _Maps_display_str, __Maps_method_proxy, __Maps_method_map_type, _Maps_method, Maps, _Xtra_Terms_tag, _Xtra_Terms_value, Xtra_Terms, ] class NCBI_FeatDef: _name_ = u'NCBI-FeatDef' _oid_ = [] _obj_ = [ u'FeatDef', u'FeatMolType', u'FeatDefSet', u'FeatDispGroup', u'FeatDispGroupSet', u'FeatDefGroupSet', ] _type_ = [ u'FeatDef', u'FeatMolType', u'FeatDefSet', u'FeatDispGroup', u'FeatDispGroupSet', u'FeatDefGroupSet', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< FeatDef >-----# FeatDef = SEQ(name=u'FeatDef', mode=MODE_TYPE) _FeatDef_typelabel = STR_VIS(name=u'typelabel', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDef_menulabel = STR_VIS(name=u'menulabel', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDef_featdef_key = INT(name=u'featdef-key', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDef_seqfeat_key = INT(name=u'seqfeat-key', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDef_entrygroup = INT(name=u'entrygroup', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDef_displaygroup = INT(name=u'displaygroup', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDef_molgroup = ENUM(name=u'molgroup', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-FeatDef', 'FeatMolType'))) FeatDef._cont = ASN1Dict([ (u'typelabel', _FeatDef_typelabel), (u'menulabel', _FeatDef_menulabel), (u'featdef-key', _FeatDef_featdef_key), (u'seqfeat-key', _FeatDef_seqfeat_key), (u'entrygroup', _FeatDef_entrygroup), (u'displaygroup', _FeatDef_displaygroup), (u'molgroup', _FeatDef_molgroup), ]) FeatDef._ext = None #-----< FeatMolType >-----# FeatMolType = ENUM(name=u'FeatMolType', mode=MODE_TYPE) FeatMolType._cont = ASN1Dict([(u'aa', 1), (u'na', 2), (u'both', 3)]) FeatMolType._ext = None #-----< FeatDefSet >-----# FeatDefSet = SEQ_OF(name=u'FeatDefSet', mode=MODE_TYPE) _FeatDefSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-FeatDef', 'FeatDef'))) FeatDefSet._cont = _FeatDefSet__item_ #-----< FeatDispGroup >-----# FeatDispGroup = SEQ(name=u'FeatDispGroup', mode=MODE_TYPE) _FeatDispGroup_groupkey = INT(name=u'groupkey', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FeatDispGroup_groupname = STR_VIS(name=u'groupname', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) FeatDispGroup._cont = ASN1Dict([ (u'groupkey', _FeatDispGroup_groupkey), (u'groupname', _FeatDispGroup_groupname), ]) FeatDispGroup._ext = None #-----< FeatDispGroupSet >-----# FeatDispGroupSet = SEQ_OF(name=u'FeatDispGroupSet', mode=MODE_TYPE) _FeatDispGroupSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-FeatDef', 'FeatDispGroup'))) FeatDispGroupSet._cont = _FeatDispGroupSet__item_ #-----< FeatDefGroupSet >-----# FeatDefGroupSet = SEQ(name=u'FeatDefGroupSet', mode=MODE_TYPE) _FeatDefGroupSet_groups = SEQ_OF(name=u'groups', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-FeatDef', 'FeatDispGroupSet'))) _FeatDefGroupSet_defs = SEQ_OF(name=u'defs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-FeatDef', 'FeatDefSet'))) FeatDefGroupSet._cont = ASN1Dict([ (u'groups', _FeatDefGroupSet_groups), (u'defs', _FeatDefGroupSet_defs), ]) FeatDefGroupSet._ext = None _all_ = [ _FeatDef_typelabel, _FeatDef_menulabel, _FeatDef_featdef_key, _FeatDef_seqfeat_key, _FeatDef_entrygroup, _FeatDef_displaygroup, _FeatDef_molgroup, FeatDef, FeatMolType, _FeatDefSet__item_, FeatDefSet, _FeatDispGroup_groupkey, _FeatDispGroup_groupname, FeatDispGroup, _FeatDispGroupSet__item_, FeatDispGroupSet, _FeatDefGroupSet_groups, _FeatDefGroupSet_defs, FeatDefGroupSet, ] class NCBI_GBSeq: _name_ = u'NCBI-GBSeq' _oid_ = [] _obj_ = [ u'GBSet', u'GBSeq', u'GBSeqid', u'GBSecondary-accn', u'GBKeyword', u'GBReference', u'GBAuthor', u'GBXref', u'GBComment', u'GBCommentParagraph', u'GBStrucComment', u'GBStrucCommentItem', u'GBFeatureSet', u'GBFeature', u'GBInterval', u'GBQualifier', u'GBAltSeqData', u'GBAltSeqItem', ] _type_ = [ u'GBSet', u'GBSeq', u'GBSeqid', u'GBSecondary-accn', u'GBKeyword', u'GBReference', u'GBAuthor', u'GBXref', u'GBComment', u'GBCommentParagraph', u'GBStrucComment', u'GBStrucCommentItem', u'GBFeatureSet', u'GBFeature', u'GBInterval', u'GBQualifier', u'GBAltSeqData', u'GBAltSeqItem', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< GBSet >-----# GBSet = SEQ_OF(name=u'GBSet', mode=MODE_TYPE) _GBSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBSeq'))) GBSet._cont = _GBSet__item_ #-----< GBSeq >-----# GBSeq = SEQ(name=u'GBSeq', mode=MODE_TYPE) _GBSeq_locus = STR_VIS(name=u'locus', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_length = INT(name=u'length', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBSeq_strandedness = STR_VIS(name=u'strandedness', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_moltype = STR_VIS(name=u'moltype', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBSeq_topology = STR_VIS(name=u'topology', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_division = STR_VIS(name=u'division', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_update_date = STR_VIS(name=u'update-date', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_create_date = STR_VIS(name=u'create-date', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_update_release = STR_VIS(name=u'update-release', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_create_release = STR_VIS(name=u'create-release', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_definition = STR_VIS(name=u'definition', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_primary_accession = STR_VIS(name=u'primary-accession', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_entry_version = STR_VIS(name=u'entry-version', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_accession_version = STR_VIS(name=u'accession-version', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_other_seqids = SEQ_OF(name=u'other-seqids', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_other_seqids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBSeqid'))) _GBSeq_other_seqids._cont = __GBSeq_other_seqids__item_ _GBSeq_secondary_accessions = SEQ_OF(name=u'secondary-accessions', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_secondary_accessions__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBSecondary-accn'))) _GBSeq_secondary_accessions._cont = __GBSeq_secondary_accessions__item_ _GBSeq_project = STR_VIS(name=u'project', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_keywords = SEQ_OF(name=u'keywords', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBKeyword'))) _GBSeq_keywords._cont = __GBSeq_keywords__item_ _GBSeq_segment = STR_VIS(name=u'segment', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_organism = STR_VIS(name=u'organism', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_taxonomy = STR_VIS(name=u'taxonomy', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_references = SEQ_OF(name=u'references', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_references__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBReference'))) _GBSeq_references._cont = __GBSeq_references__item_ _GBSeq_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_comment_set = SEQ_OF(name=u'comment-set', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_comment_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBComment'))) _GBSeq_comment_set._cont = __GBSeq_comment_set__item_ _GBSeq_struc_comments = SEQ_OF(name=u'struc-comments', mode=MODE_TYPE, tag=(25, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_struc_comments__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBStrucComment'))) _GBSeq_struc_comments._cont = __GBSeq_struc_comments__item_ _GBSeq_primary = STR_VIS(name=u'primary', mode=MODE_TYPE, tag=(26, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_source_db = STR_VIS(name=u'source-db', mode=MODE_TYPE, tag=(27, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_database_reference = STR_VIS(name=u'database-reference', mode=MODE_TYPE, tag=(28, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_feature_table = SEQ_OF(name=u'feature-table', mode=MODE_TYPE, tag=(29, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_feature_table__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBFeature'))) _GBSeq_feature_table._cont = __GBSeq_feature_table__item_ _GBSeq_feature_set = SEQ_OF(name=u'feature-set', mode=MODE_TYPE, tag=(30, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_feature_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBFeatureSet'))) _GBSeq_feature_set._cont = __GBSeq_feature_set__item_ _GBSeq_sequence = STR_VIS(name=u'sequence', mode=MODE_TYPE, tag=(31, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_contig = STR_VIS(name=u'contig', mode=MODE_TYPE, tag=(32, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBSeq_alt_seq = SEQ_OF(name=u'alt-seq', mode=MODE_TYPE, tag=(33, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_alt_seq__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBAltSeqData'))) _GBSeq_alt_seq._cont = __GBSeq_alt_seq__item_ _GBSeq_xrefs = SEQ_OF(name=u'xrefs', mode=MODE_TYPE, tag=(34, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBSeq_xrefs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBXref'))) _GBSeq_xrefs._cont = __GBSeq_xrefs__item_ GBSeq._cont = ASN1Dict([ (u'locus', _GBSeq_locus), (u'length', _GBSeq_length), (u'strandedness', _GBSeq_strandedness), (u'moltype', _GBSeq_moltype), (u'topology', _GBSeq_topology), (u'division', _GBSeq_division), (u'update-date', _GBSeq_update_date), (u'create-date', _GBSeq_create_date), (u'update-release', _GBSeq_update_release), (u'create-release', _GBSeq_create_release), (u'definition', _GBSeq_definition), (u'primary-accession', _GBSeq_primary_accession), (u'entry-version', _GBSeq_entry_version), (u'accession-version', _GBSeq_accession_version), (u'other-seqids', _GBSeq_other_seqids), (u'secondary-accessions', _GBSeq_secondary_accessions), (u'project', _GBSeq_project), (u'keywords', _GBSeq_keywords), (u'segment', _GBSeq_segment), (u'source', _GBSeq_source), (u'organism', _GBSeq_organism), (u'taxonomy', _GBSeq_taxonomy), (u'references', _GBSeq_references), (u'comment', _GBSeq_comment), (u'comment-set', _GBSeq_comment_set), (u'struc-comments', _GBSeq_struc_comments), (u'primary', _GBSeq_primary), (u'source-db', _GBSeq_source_db), (u'database-reference', _GBSeq_database_reference), (u'feature-table', _GBSeq_feature_table), (u'feature-set', _GBSeq_feature_set), (u'sequence', _GBSeq_sequence), (u'contig', _GBSeq_contig), (u'alt-seq', _GBSeq_alt_seq), (u'xrefs', _GBSeq_xrefs), ]) GBSeq._ext = None #-----< GBSeqid >-----# GBSeqid = STR_VIS(name=u'GBSeqid', mode=MODE_TYPE) #-----< GBSecondary-accn >-----# GBSecondary_accn = STR_VIS(name=u'GBSecondary-accn', mode=MODE_TYPE) #-----< GBKeyword >-----# GBKeyword = STR_VIS(name=u'GBKeyword', mode=MODE_TYPE) #-----< GBReference >-----# GBReference = SEQ(name=u'GBReference', mode=MODE_TYPE) _GBReference_reference = STR_VIS(name=u'reference', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBReference_position = STR_VIS(name=u'position', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBReference_authors = SEQ_OF(name=u'authors', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBReference_authors__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBAuthor'))) _GBReference_authors._cont = __GBReference_authors__item_ _GBReference_consortium = STR_VIS(name=u'consortium', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBReference_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBReference_journal = STR_VIS(name=u'journal', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBReference_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBReference_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBXref'))) _GBReference_xref._cont = __GBReference_xref__item_ _GBReference_pubmed = INT(name=u'pubmed', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBReference_remark = STR_VIS(name=u'remark', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) GBReference._cont = ASN1Dict([ (u'reference', _GBReference_reference), (u'position', _GBReference_position), (u'authors', _GBReference_authors), (u'consortium', _GBReference_consortium), (u'title', _GBReference_title), (u'journal', _GBReference_journal), (u'xref', _GBReference_xref), (u'pubmed', _GBReference_pubmed), (u'remark', _GBReference_remark), ]) GBReference._ext = None #-----< GBAuthor >-----# GBAuthor = STR_VIS(name=u'GBAuthor', mode=MODE_TYPE) #-----< GBXref >-----# GBXref = SEQ(name=u'GBXref', mode=MODE_TYPE) _GBXref_dbname = STR_VIS(name=u'dbname', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBXref_id = STR_VIS(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) GBXref._cont = ASN1Dict([ (u'dbname', _GBXref_dbname), (u'id', _GBXref_id), ]) GBXref._ext = None #-----< GBComment >-----# GBComment = SEQ(name=u'GBComment', mode=MODE_TYPE) _GBComment_type = STR_VIS(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBComment_paragraphs = SEQ_OF(name=u'paragraphs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __GBComment_paragraphs__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBCommentParagraph'))) _GBComment_paragraphs._cont = __GBComment_paragraphs__item_ GBComment._cont = ASN1Dict([ (u'type', _GBComment_type), (u'paragraphs', _GBComment_paragraphs), ]) GBComment._ext = None #-----< GBCommentParagraph >-----# GBCommentParagraph = STR_VIS(name=u'GBCommentParagraph', mode=MODE_TYPE) #-----< GBStrucComment >-----# GBStrucComment = SEQ(name=u'GBStrucComment', mode=MODE_TYPE) _GBStrucComment_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBStrucComment_items = SEQ_OF(name=u'items', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __GBStrucComment_items__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBStrucCommentItem'))) _GBStrucComment_items._cont = __GBStrucComment_items__item_ GBStrucComment._cont = ASN1Dict([ (u'name', _GBStrucComment_name), (u'items', _GBStrucComment_items), ]) GBStrucComment._ext = None #-----< GBStrucCommentItem >-----# GBStrucCommentItem = SEQ(name=u'GBStrucCommentItem', mode=MODE_TYPE) _GBStrucCommentItem_tag = STR_VIS(name=u'tag', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBStrucCommentItem_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBStrucCommentItem_url = STR_VIS(name=u'url', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) GBStrucCommentItem._cont = ASN1Dict([ (u'tag', _GBStrucCommentItem_tag), (u'value', _GBStrucCommentItem_value), (u'url', _GBStrucCommentItem_url), ]) GBStrucCommentItem._ext = None #-----< GBFeatureSet >-----# GBFeatureSet = SEQ(name=u'GBFeatureSet', mode=MODE_TYPE) _GBFeatureSet_annot_source = STR_VIS(name=u'annot-source', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBFeatureSet_features = SEQ_OF(name=u'features', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __GBFeatureSet_features__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBFeature'))) _GBFeatureSet_features._cont = __GBFeatureSet_features__item_ GBFeatureSet._cont = ASN1Dict([ (u'annot-source', _GBFeatureSet_annot_source), (u'features', _GBFeatureSet_features), ]) GBFeatureSet._ext = None #-----< GBFeature >-----# GBFeature = SEQ(name=u'GBFeature', mode=MODE_TYPE) _GBFeature_key = STR_VIS(name=u'key', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBFeature_location = STR_VIS(name=u'location', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBFeature_intervals = SEQ_OF(name=u'intervals', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBFeature_intervals__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBInterval'))) _GBFeature_intervals._cont = __GBFeature_intervals__item_ _GBFeature_operator = STR_VIS(name=u'operator', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBFeature_partial5 = BOOL(name=u'partial5', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBFeature_partial3 = BOOL(name=u'partial3', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBFeature_quals = SEQ_OF(name=u'quals', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBFeature_quals__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBQualifier'))) _GBFeature_quals._cont = __GBFeature_quals__item_ _GBFeature_xrefs = SEQ_OF(name=u'xrefs', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBFeature_xrefs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBXref'))) _GBFeature_xrefs._cont = __GBFeature_xrefs__item_ GBFeature._cont = ASN1Dict([ (u'key', _GBFeature_key), (u'location', _GBFeature_location), (u'intervals', _GBFeature_intervals), (u'operator', _GBFeature_operator), (u'partial5', _GBFeature_partial5), (u'partial3', _GBFeature_partial3), (u'quals', _GBFeature_quals), (u'xrefs', _GBFeature_xrefs), ]) GBFeature._ext = None #-----< GBInterval >-----# GBInterval = SEQ(name=u'GBInterval', mode=MODE_TYPE) _GBInterval_from_ = INT(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBInterval_to = INT(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBInterval_point = INT(name=u'point', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBInterval_iscomp = BOOL(name=u'iscomp', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBInterval_interbp = BOOL(name=u'interbp', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBInterval_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) GBInterval._cont = ASN1Dict([ (u'from', _GBInterval_from_), (u'to', _GBInterval_to), (u'point', _GBInterval_point), (u'iscomp', _GBInterval_iscomp), (u'interbp', _GBInterval_interbp), (u'accession', _GBInterval_accession), ]) GBInterval._ext = None #-----< GBQualifier >-----# GBQualifier = SEQ(name=u'GBQualifier', mode=MODE_TYPE) _GBQualifier_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBQualifier_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) GBQualifier._cont = ASN1Dict([ (u'name', _GBQualifier_name), (u'value', _GBQualifier_value), ]) GBQualifier._ext = None #-----< GBAltSeqData >-----# GBAltSeqData = SEQ(name=u'GBAltSeqData', mode=MODE_TYPE) _GBAltSeqData_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GBAltSeqData_items = SEQ_OF(name=u'items', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GBAltSeqData_items__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-GBSeq', 'GBAltSeqItem'))) _GBAltSeqData_items._cont = __GBAltSeqData_items__item_ GBAltSeqData._cont = ASN1Dict([ (u'name', _GBAltSeqData_name), (u'items', _GBAltSeqData_items), ]) GBAltSeqData._ext = None #-----< GBAltSeqItem >-----# GBAltSeqItem = SEQ(name=u'GBAltSeqItem', mode=MODE_TYPE) _GBAltSeqItem_interval = SEQ(name=u'interval', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-GBSeq', 'GBInterval')), opt=True) _GBAltSeqItem_isgap = BOOL(name=u'isgap', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_gap_length = INT(name=u'gap-length', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_gap_type = STR_VIS(name=u'gap-type', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_gap_linkage = STR_VIS(name=u'gap-linkage', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_gap_comment = STR_VIS(name=u'gap-comment', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_first_accn = STR_VIS(name=u'first-accn', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_last_accn = STR_VIS(name=u'last-accn', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GBAltSeqItem_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) GBAltSeqItem._cont = ASN1Dict([ (u'interval', _GBAltSeqItem_interval), (u'isgap', _GBAltSeqItem_isgap), (u'gap-length', _GBAltSeqItem_gap_length), (u'gap-type', _GBAltSeqItem_gap_type), (u'gap-linkage', _GBAltSeqItem_gap_linkage), (u'gap-comment', _GBAltSeqItem_gap_comment), (u'first-accn', _GBAltSeqItem_first_accn), (u'last-accn', _GBAltSeqItem_last_accn), (u'value', _GBAltSeqItem_value), ]) GBAltSeqItem._ext = None _all_ = [ _GBSet__item_, GBSet, _GBSeq_locus, _GBSeq_length, _GBSeq_strandedness, _GBSeq_moltype, _GBSeq_topology, _GBSeq_division, _GBSeq_update_date, _GBSeq_create_date, _GBSeq_update_release, _GBSeq_create_release, _GBSeq_definition, _GBSeq_primary_accession, _GBSeq_entry_version, _GBSeq_accession_version, __GBSeq_other_seqids__item_, _GBSeq_other_seqids, __GBSeq_secondary_accessions__item_, _GBSeq_secondary_accessions, _GBSeq_project, __GBSeq_keywords__item_, _GBSeq_keywords, _GBSeq_segment, _GBSeq_source, _GBSeq_organism, _GBSeq_taxonomy, __GBSeq_references__item_, _GBSeq_references, _GBSeq_comment, __GBSeq_comment_set__item_, _GBSeq_comment_set, __GBSeq_struc_comments__item_, _GBSeq_struc_comments, _GBSeq_primary, _GBSeq_source_db, _GBSeq_database_reference, __GBSeq_feature_table__item_, _GBSeq_feature_table, __GBSeq_feature_set__item_, _GBSeq_feature_set, _GBSeq_sequence, _GBSeq_contig, __GBSeq_alt_seq__item_, _GBSeq_alt_seq, __GBSeq_xrefs__item_, _GBSeq_xrefs, GBSeq, GBSeqid, GBSecondary_accn, GBKeyword, _GBReference_reference, _GBReference_position, __GBReference_authors__item_, _GBReference_authors, _GBReference_consortium, _GBReference_title, _GBReference_journal, __GBReference_xref__item_, _GBReference_xref, _GBReference_pubmed, _GBReference_remark, GBReference, GBAuthor, _GBXref_dbname, _GBXref_id, GBXref, _GBComment_type, __GBComment_paragraphs__item_, _GBComment_paragraphs, GBComment, GBCommentParagraph, _GBStrucComment_name, __GBStrucComment_items__item_, _GBStrucComment_items, GBStrucComment, _GBStrucCommentItem_tag, _GBStrucCommentItem_value, _GBStrucCommentItem_url, GBStrucCommentItem, _GBFeatureSet_annot_source, __GBFeatureSet_features__item_, _GBFeatureSet_features, GBFeatureSet, _GBFeature_key, _GBFeature_location, __GBFeature_intervals__item_, _GBFeature_intervals, _GBFeature_operator, _GBFeature_partial5, _GBFeature_partial3, __GBFeature_quals__item_, _GBFeature_quals, __GBFeature_xrefs__item_, _GBFeature_xrefs, GBFeature, _GBInterval_from_, _GBInterval_to, _GBInterval_point, _GBInterval_iscomp, _GBInterval_interbp, _GBInterval_accession, GBInterval, _GBQualifier_name, _GBQualifier_value, GBQualifier, _GBAltSeqData_name, __GBAltSeqData_items__item_, _GBAltSeqData_items, GBAltSeqData, _GBAltSeqItem_interval, _GBAltSeqItem_isgap, _GBAltSeqItem_gap_length, _GBAltSeqItem_gap_type, _GBAltSeqItem_gap_linkage, _GBAltSeqItem_gap_comment, _GBAltSeqItem_first_accn, _GBAltSeqItem_last_accn, _GBAltSeqItem_value, GBAltSeqItem, ] class NCBI_General: _name_ = u'NCBI-General' _oid_ = [] _obj_ = [ u'Date', u'Date-std', u'Dbtag', u'Object-id', u'Person-id', u'Name-std', u'Int-fuzz', u'User-object', u'User-field', ] _type_ = [ u'Date', u'Date-std', u'Dbtag', u'Object-id', u'Person-id', u'Name-std', u'Int-fuzz', u'User-object', u'User-field', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Date >-----# Date = CHOICE(name=u'Date', mode=MODE_TYPE) _Date_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Date_std = SEQ(name=u'std', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date-std'))) Date._cont = ASN1Dict([ (u'str', _Date_str), (u'std', _Date_std), ]) Date._ext = None #-----< Date-std >-----# Date_std = SEQ(name=u'Date-std', mode=MODE_TYPE) _Date_std_year = INT(name=u'year', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Date_std_month = INT(name=u'month', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Date_std_day = INT(name=u'day', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Date_std_season = STR_VIS(name=u'season', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Date_std_hour = INT(name=u'hour', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Date_std_minute = INT(name=u'minute', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Date_std_second = INT(name=u'second', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Date_std._cont = ASN1Dict([ (u'year', _Date_std_year), (u'month', _Date_std_month), (u'day', _Date_std_day), (u'season', _Date_std_season), (u'hour', _Date_std_hour), (u'minute', _Date_std_minute), (u'second', _Date_std_second), ]) Date_std._ext = None #-----< Dbtag >-----# Dbtag = SEQ(name=u'Dbtag', mode=MODE_TYPE) _Dbtag_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Dbtag_tag = CHOICE(name=u'tag', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) Dbtag._cont = ASN1Dict([ (u'db', _Dbtag_db), (u'tag', _Dbtag_tag), ]) Dbtag._ext = None #-----< Object-id >-----# Object_id = CHOICE(name=u'Object-id', mode=MODE_TYPE) _Object_id_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Object_id_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Object_id._cont = ASN1Dict([ (u'id', _Object_id_id), (u'str', _Object_id_str), ]) Object_id._ext = None #-----< Person-id >-----# Person_id = CHOICE(name=u'Person-id', mode=MODE_TYPE) _Person_id_dbtag = SEQ(name=u'dbtag', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Person_id_name = SEQ(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Name-std'))) _Person_id_ml = STR_VIS(name=u'ml', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Person_id_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Person_id_consortium = STR_VIS(name=u'consortium', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Person_id._cont = ASN1Dict([ (u'dbtag', _Person_id_dbtag), (u'name', _Person_id_name), (u'ml', _Person_id_ml), (u'str', _Person_id_str), (u'consortium', _Person_id_consortium), ]) Person_id._ext = None #-----< Name-std >-----# Name_std = SEQ(name=u'Name-std', mode=MODE_TYPE) _Name_std_last = STR_VIS(name=u'last', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Name_std_first = STR_VIS(name=u'first', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Name_std_middle = STR_VIS(name=u'middle', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Name_std_full = STR_VIS(name=u'full', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Name_std_initials = STR_VIS(name=u'initials', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Name_std_suffix = STR_VIS(name=u'suffix', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Name_std_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Name_std._cont = ASN1Dict([ (u'last', _Name_std_last), (u'first', _Name_std_first), (u'middle', _Name_std_middle), (u'full', _Name_std_full), (u'initials', _Name_std_initials), (u'suffix', _Name_std_suffix), (u'title', _Name_std_title), ]) Name_std._ext = None #-----< Int-fuzz >-----# Int_fuzz = CHOICE(name=u'Int-fuzz', mode=MODE_TYPE) _Int_fuzz_p_m = INT(name=u'p-m', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_fuzz_range = SEQ(name=u'range', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Int_fuzz_range_max = INT(name=u'max', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Int_fuzz_range_min = INT(name=u'min', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_fuzz_range._cont = ASN1Dict([ (u'max', __Int_fuzz_range_max), (u'min', __Int_fuzz_range_min), ]) _Int_fuzz_range._ext = None _Int_fuzz_pct = INT(name=u'pct', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_fuzz_lim = ENUM(name=u'lim', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_fuzz_lim._cont = ASN1Dict([(u'unk', 0), (u'gt', 1), (u'lt', 2), (u'tr', 3), (u'tl', 4), (u'circle', 5), (u'other', 255)]) _Int_fuzz_lim._ext = None _Int_fuzz_alt = SET_OF(name=u'alt', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Int_fuzz_alt__item_ = INT(name='_item_', mode=MODE_TYPE) _Int_fuzz_alt._cont = __Int_fuzz_alt__item_ Int_fuzz._cont = ASN1Dict([ (u'p-m', _Int_fuzz_p_m), (u'range', _Int_fuzz_range), (u'pct', _Int_fuzz_pct), (u'lim', _Int_fuzz_lim), (u'alt', _Int_fuzz_alt), ]) Int_fuzz._ext = None #-----< User-object >-----# User_object = SEQ(name=u'User-object', mode=MODE_TYPE) _User_object_class_ = STR_VIS(name=u'class', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _User_object_type = CHOICE(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _User_object_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __User_object_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'User-field'))) _User_object_data._cont = __User_object_data__item_ User_object._cont = ASN1Dict([ (u'class', _User_object_class_), (u'type', _User_object_type), (u'data', _User_object_data), ]) User_object._ext = None #-----< User-field >-----# User_field = SEQ(name=u'User-field', mode=MODE_TYPE) _User_field_label = CHOICE(name=u'label', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _User_field_num = INT(name=u'num', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _User_field_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __User_field_data_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __User_field_data_int = INT(name=u'int', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __User_field_data_real = REAL(name=u'real', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) __User_field_data_bool = BOOL(name=u'bool', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __User_field_data_os = OCT_STR(name=u'os', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __User_field_data_object = SEQ(name=u'object', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object'))) __User_field_data_strs = SEQ_OF(name=u'strs', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___User_field_data_strs__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) __User_field_data_strs._cont = ___User_field_data_strs__item_ __User_field_data_ints = SEQ_OF(name=u'ints', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___User_field_data_ints__item_ = INT(name='_item_', mode=MODE_TYPE) __User_field_data_ints._cont = ___User_field_data_ints__item_ __User_field_data_reals = SEQ_OF(name=u'reals', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___User_field_data_reals__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) __User_field_data_reals._cont = ___User_field_data_reals__item_ __User_field_data_oss = SEQ_OF(name=u'oss', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___User_field_data_oss__item_ = OCT_STR(name='_item_', mode=MODE_TYPE) __User_field_data_oss._cont = ___User_field_data_oss__item_ __User_field_data_fields = SEQ_OF(name=u'fields', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___User_field_data_fields__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'User-field'))) __User_field_data_fields._cont = ___User_field_data_fields__item_ __User_field_data_objects = SEQ_OF(name=u'objects', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___User_field_data_objects__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'User-object'))) __User_field_data_objects._cont = ___User_field_data_objects__item_ _User_field_data._cont = ASN1Dict([ (u'str', __User_field_data_str), (u'int', __User_field_data_int), (u'real', __User_field_data_real), (u'bool', __User_field_data_bool), (u'os', __User_field_data_os), (u'object', __User_field_data_object), (u'strs', __User_field_data_strs), (u'ints', __User_field_data_ints), (u'reals', __User_field_data_reals), (u'oss', __User_field_data_oss), (u'fields', __User_field_data_fields), (u'objects', __User_field_data_objects), ]) _User_field_data._ext = None User_field._cont = ASN1Dict([ (u'label', _User_field_label), (u'num', _User_field_num), (u'data', _User_field_data), ]) User_field._ext = None _all_ = [ _Date_str, _Date_std, Date, _Date_std_year, _Date_std_month, _Date_std_day, _Date_std_season, _Date_std_hour, _Date_std_minute, _Date_std_second, Date_std, _Dbtag_db, _Dbtag_tag, Dbtag, _Object_id_id, _Object_id_str, Object_id, _Person_id_dbtag, _Person_id_name, _Person_id_ml, _Person_id_str, _Person_id_consortium, Person_id, _Name_std_last, _Name_std_first, _Name_std_middle, _Name_std_full, _Name_std_initials, _Name_std_suffix, _Name_std_title, Name_std, _Int_fuzz_p_m, __Int_fuzz_range_max, __Int_fuzz_range_min, _Int_fuzz_range, _Int_fuzz_pct, _Int_fuzz_lim, __Int_fuzz_alt__item_, _Int_fuzz_alt, Int_fuzz, _User_object_class_, _User_object_type, __User_object_data__item_, _User_object_data, User_object, _User_field_label, _User_field_num, __User_field_data_str, __User_field_data_int, __User_field_data_real, __User_field_data_bool, __User_field_data_os, __User_field_data_object, ___User_field_data_strs__item_, __User_field_data_strs, ___User_field_data_ints__item_, __User_field_data_ints, ___User_field_data_reals__item_, __User_field_data_reals, ___User_field_data_oss__item_, __User_field_data_oss, ___User_field_data_fields__item_, __User_field_data_fields, ___User_field_data_objects__item_, __User_field_data_objects, _User_field_data, User_field, ] class HomoloGene: _name_ = u'HomoloGene' _oid_ = [] _obj_ = [ u'HG-EntrySet', u'HG-Entry', u'HG-Gene', u'HG-Stats', u'HG-Commentary', u'HG-CommentarySet', u'HG-CommentaryContainer', u'HG-Link', u'HG-Domain', u'HG-Node', u'HG-Node-id', u'HG-Alignment', u'HG-AlignmentSet', ] _type_ = [ u'HG-EntrySet', u'HG-Entry', u'HG-Gene', u'HG-Stats', u'HG-Commentary', u'HG-CommentarySet', u'HG-CommentaryContainer', u'HG-Link', u'HG-Domain', u'HG-Node', u'HG-Node-id', u'HG-Alignment', u'HG-AlignmentSet', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< HG-EntrySet >-----# HG_EntrySet = SEQ(name=u'HG-EntrySet', mode=MODE_TYPE) _HG_EntrySet_entries = SET_OF(name=u'entries', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __HG_EntrySet_entries__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Entry'))) _HG_EntrySet_entries._cont = __HG_EntrySet_entries__item_ HG_EntrySet._cont = ASN1Dict([ (u'entries', _HG_EntrySet_entries), ]) HG_EntrySet._ext = None #-----< HG-Entry >-----# HG_Entry = SEQ(name=u'HG-Entry', mode=MODE_TYPE) _HG_Entry_hg_id = INT(name=u'hg-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Entry_version = INT(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Entry_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Entry_caption = STR_VIS(name=u'caption', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Entry_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Entry_genes = SET_OF(name=u'genes', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Entry_genes__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Gene'))) _HG_Entry_genes._cont = __HG_Entry_genes__item_ _HG_Entry_cr_date = CHOICE(name=u'cr-date', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _HG_Entry_up_date = CHOICE(name=u'up-date', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _HG_Entry_distances = SET_OF(name=u'distances', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Entry_distances__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Stats'))) _HG_Entry_distances._cont = __HG_Entry_distances__item_ _HG_Entry_commentaries = SET_OF(name=u'commentaries', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Entry_commentaries__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-CommentarySet'))) _HG_Entry_commentaries._cont = __HG_Entry_commentaries__item_ _HG_Entry_warnings = SET_OF(name=u'warnings', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Entry_warnings__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _HG_Entry_warnings._cont = __HG_Entry_warnings__item_ _HG_Entry_node = SEQ(name=u'node', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('HomoloGene', 'HG-Node')), opt=True) HG_Entry._cont = ASN1Dict([ (u'hg-id', _HG_Entry_hg_id), (u'version', _HG_Entry_version), (u'title', _HG_Entry_title), (u'caption', _HG_Entry_caption), (u'taxid', _HG_Entry_taxid), (u'genes', _HG_Entry_genes), (u'cr-date', _HG_Entry_cr_date), (u'up-date', _HG_Entry_up_date), (u'distances', _HG_Entry_distances), (u'commentaries', _HG_Entry_commentaries), (u'warnings', _HG_Entry_warnings), (u'node', _HG_Entry_node), ]) HG_Entry._ext = None #-----< HG-Gene >-----# HG_Gene = SEQ(name=u'HG-Gene', mode=MODE_TYPE) _HG_Gene_geneid = INT(name=u'geneid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Gene_otherid = INT(name=u'otherid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_symbol = STR_VIS(name=u'symbol', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_aliases = SET_OF(name=u'aliases', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Gene_aliases__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _HG_Gene_aliases._cont = __HG_Gene_aliases__item_ _HG_Gene_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Gene_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Gene_prot_gi = INT(name=u'prot-gi', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_prot_acc = STR_VIS(name=u'prot-acc', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_prot_len = INT(name=u'prot-len', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_nuc_gi = INT(name=u'nuc-gi', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_nuc_acc = STR_VIS(name=u'nuc-acc', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_gene_links = SET_OF(name=u'gene-links', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Gene_gene_links__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Link'))) _HG_Gene_gene_links._cont = __HG_Gene_gene_links__item_ _HG_Gene_prot_links = SET_OF(name=u'prot-links', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Gene_prot_links__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Link'))) _HG_Gene_prot_links._cont = __HG_Gene_prot_links__item_ _HG_Gene_domains = SET_OF(name=u'domains', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Gene_domains__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Domain'))) _HG_Gene_domains._cont = __HG_Gene_domains__item_ _HG_Gene_chr = STR_VIS(name=u'chr', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Gene_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) _HG_Gene_locus_tag = STR_VIS(name=u'locus-tag', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HG_Gene._cont = ASN1Dict([ (u'geneid', _HG_Gene_geneid), (u'otherid', _HG_Gene_otherid), (u'symbol', _HG_Gene_symbol), (u'aliases', _HG_Gene_aliases), (u'title', _HG_Gene_title), (u'taxid', _HG_Gene_taxid), (u'prot-gi', _HG_Gene_prot_gi), (u'prot-acc', _HG_Gene_prot_acc), (u'prot-len', _HG_Gene_prot_len), (u'nuc-gi', _HG_Gene_nuc_gi), (u'nuc-acc', _HG_Gene_nuc_acc), (u'gene-links', _HG_Gene_gene_links), (u'prot-links', _HG_Gene_prot_links), (u'domains', _HG_Gene_domains), (u'chr', _HG_Gene_chr), (u'location', _HG_Gene_location), (u'locus-tag', _HG_Gene_locus_tag), ]) HG_Gene._ext = None #-----< HG-Stats >-----# HG_Stats = SEQ(name=u'HG-Stats', mode=MODE_TYPE) _HG_Stats_gi1 = INT(name=u'gi1', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Stats_gi2 = INT(name=u'gi2', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Stats_nuc_change = REAL(name=u'nuc-change', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_nuc_change_jc = REAL(name=u'nuc-change-jc', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_prot_change = REAL(name=u'prot-change', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_ka = REAL(name=u'ka', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_ks = REAL(name=u'ks', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_knr = REAL(name=u'knr', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_knc = REAL(name=u'knc', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _HG_Stats_recip_best = BOOL(name=u'recip-best', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HG_Stats._cont = ASN1Dict([ (u'gi1', _HG_Stats_gi1), (u'gi2', _HG_Stats_gi2), (u'nuc-change', _HG_Stats_nuc_change), (u'nuc-change-jc', _HG_Stats_nuc_change_jc), (u'prot-change', _HG_Stats_prot_change), (u'ka', _HG_Stats_ka), (u'ks', _HG_Stats_ks), (u'knr', _HG_Stats_knr), (u'knc', _HG_Stats_knc), (u'recip-best', _HG_Stats_recip_best), ]) HG_Stats._ext = None #-----< HG-Commentary >-----# HG_Commentary = SEQ(name=u'HG-Commentary', mode=MODE_TYPE) _HG_Commentary_link = SEQ(name=u'link', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('HomoloGene', 'HG-Link'))) _HG_Commentary_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Commentary_caption = STR_VIS(name=u'caption', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Commentary_provider = STR_VIS(name=u'provider', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Commentary_other_links = SET_OF(name=u'other-links', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Commentary_other_links__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Link'))) _HG_Commentary_other_links._cont = __HG_Commentary_other_links__item_ _HG_Commentary_other_commentaries = SET_OF(name=u'other-commentaries', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Commentary_other_commentaries__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Commentary'))) _HG_Commentary_other_commentaries._cont = __HG_Commentary_other_commentaries__item_ _HG_Commentary_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Commentary_geneid = INT(name=u'geneid', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HG_Commentary._cont = ASN1Dict([ (u'link', _HG_Commentary_link), (u'description', _HG_Commentary_description), (u'caption', _HG_Commentary_caption), (u'provider', _HG_Commentary_provider), (u'other-links', _HG_Commentary_other_links), (u'other-commentaries', _HG_Commentary_other_commentaries), (u'taxid', _HG_Commentary_taxid), (u'geneid', _HG_Commentary_geneid), ]) HG_Commentary._ext = None #-----< HG-CommentarySet >-----# HG_CommentarySet = SEQ(name=u'HG-CommentarySet', mode=MODE_TYPE) _HG_CommentarySet_hg_id = INT(name=u'hg-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_CommentarySet_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_CommentarySet_commentaries = SET_OF(name=u'commentaries', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __HG_CommentarySet_commentaries__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Commentary'))) _HG_CommentarySet_commentaries._cont = __HG_CommentarySet_commentaries__item_ HG_CommentarySet._cont = ASN1Dict([ (u'hg-id', _HG_CommentarySet_hg_id), (u'title', _HG_CommentarySet_title), (u'commentaries', _HG_CommentarySet_commentaries), ]) HG_CommentarySet._ext = None #-----< HG-CommentaryContainer >-----# HG_CommentaryContainer = SET_OF(name=u'HG-CommentaryContainer', mode=MODE_TYPE) _HG_CommentaryContainer__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-CommentarySet'))) HG_CommentaryContainer._cont = _HG_CommentaryContainer__item_ #-----< HG-Link >-----# HG_Link = SEQ(name=u'HG-Link', mode=MODE_TYPE) _HG_Link_hypertext = STR_VIS(name=u'hypertext', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Link_url = STR_VIS(name=u'url', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HG_Link._cont = ASN1Dict([ (u'hypertext', _HG_Link_hypertext), (u'url', _HG_Link_url), ]) HG_Link._ext = None #-----< HG-Domain >-----# HG_Domain = SEQ(name=u'HG-Domain', mode=MODE_TYPE) _HG_Domain_begin = INT(name=u'begin', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Domain_end = INT(name=u'end', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Domain_pssm_id = INT(name=u'pssm-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Domain_cdd_id = STR_VIS(name=u'cdd-id', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Domain_cdd_name = STR_VIS(name=u'cdd-name', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HG_Domain._cont = ASN1Dict([ (u'begin', _HG_Domain_begin), (u'end', _HG_Domain_end), (u'pssm-id', _HG_Domain_pssm_id), (u'cdd-id', _HG_Domain_cdd_id), (u'cdd-name', _HG_Domain_cdd_name), ]) HG_Domain._ext = None #-----< HG-Node >-----# HG_Node = SEQ(name=u'HG-Node', mode=MODE_TYPE) _HG_Node_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Node_type._cont = ASN1Dict([(u'family', 0), (u'ortholog', 1), (u'paralog', 2), (u'leaf', 3)]) _HG_Node_type._ext = None _HG_Node_id = SEQ(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('HomoloGene', 'HG-Node-id'))) _HG_Node_caption = STR_VIS(name=u'caption', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Node_current_node = BOOL(name=u'current-node', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _HG_Node_children = SET_OF(name=u'children', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __HG_Node_children__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Node'))) _HG_Node_children._cont = __HG_Node_children__item_ _HG_Node_branch_len = INT(name=u'branch-len', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) HG_Node._cont = ASN1Dict([ (u'type', _HG_Node_type), (u'id', _HG_Node_id), (u'caption', _HG_Node_caption), (u'current-node', _HG_Node_current_node), (u'children', _HG_Node_children), (u'branch-len', _HG_Node_branch_len), ]) HG_Node._ext = None #-----< HG-Node-id >-----# HG_Node_id = SEQ(name=u'HG-Node-id', mode=MODE_TYPE) _HG_Node_id_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _HG_Node_id_id_type = ENUM(name=u'id-type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Node_id_id_type._cont = ASN1Dict([(u'none', 0), (u'geneid', 1), (u'hid', 2)]) _HG_Node_id_id_type._ext = None HG_Node_id._cont = ASN1Dict([ (u'id', _HG_Node_id_id), (u'id-type', _HG_Node_id_id_type), ]) HG_Node_id._ext = None #-----< HG-Alignment >-----# HG_Alignment = SEQ(name=u'HG-Alignment', mode=MODE_TYPE) _HG_Alignment_hg_id = INT(name=u'hg-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _HG_Alignment_alignment = SEQ(name=u'alignment', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) HG_Alignment._cont = ASN1Dict([ (u'hg-id', _HG_Alignment_hg_id), (u'alignment', _HG_Alignment_alignment), ]) HG_Alignment._ext = None #-----< HG-AlignmentSet >-----# HG_AlignmentSet = SET_OF(name=u'HG-AlignmentSet', mode=MODE_TYPE) _HG_AlignmentSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('HomoloGene', 'HG-Alignment'))) HG_AlignmentSet._cont = _HG_AlignmentSet__item_ _all_ = [ __HG_EntrySet_entries__item_, _HG_EntrySet_entries, HG_EntrySet, _HG_Entry_hg_id, _HG_Entry_version, _HG_Entry_title, _HG_Entry_caption, _HG_Entry_taxid, __HG_Entry_genes__item_, _HG_Entry_genes, _HG_Entry_cr_date, _HG_Entry_up_date, __HG_Entry_distances__item_, _HG_Entry_distances, __HG_Entry_commentaries__item_, _HG_Entry_commentaries, __HG_Entry_warnings__item_, _HG_Entry_warnings, _HG_Entry_node, HG_Entry, _HG_Gene_geneid, _HG_Gene_otherid, _HG_Gene_symbol, __HG_Gene_aliases__item_, _HG_Gene_aliases, _HG_Gene_title, _HG_Gene_taxid, _HG_Gene_prot_gi, _HG_Gene_prot_acc, _HG_Gene_prot_len, _HG_Gene_nuc_gi, _HG_Gene_nuc_acc, __HG_Gene_gene_links__item_, _HG_Gene_gene_links, __HG_Gene_prot_links__item_, _HG_Gene_prot_links, __HG_Gene_domains__item_, _HG_Gene_domains, _HG_Gene_chr, _HG_Gene_location, _HG_Gene_locus_tag, HG_Gene, _HG_Stats_gi1, _HG_Stats_gi2, _HG_Stats_nuc_change, _HG_Stats_nuc_change_jc, _HG_Stats_prot_change, _HG_Stats_ka, _HG_Stats_ks, _HG_Stats_knr, _HG_Stats_knc, _HG_Stats_recip_best, HG_Stats, _HG_Commentary_link, _HG_Commentary_description, _HG_Commentary_caption, _HG_Commentary_provider, __HG_Commentary_other_links__item_, _HG_Commentary_other_links, __HG_Commentary_other_commentaries__item_, _HG_Commentary_other_commentaries, _HG_Commentary_taxid, _HG_Commentary_geneid, HG_Commentary, _HG_CommentarySet_hg_id, _HG_CommentarySet_title, __HG_CommentarySet_commentaries__item_, _HG_CommentarySet_commentaries, HG_CommentarySet, _HG_CommentaryContainer__item_, HG_CommentaryContainer, _HG_Link_hypertext, _HG_Link_url, HG_Link, _HG_Domain_begin, _HG_Domain_end, _HG_Domain_pssm_id, _HG_Domain_cdd_id, _HG_Domain_cdd_name, HG_Domain, _HG_Node_type, _HG_Node_id, _HG_Node_caption, _HG_Node_current_node, __HG_Node_children__item_, _HG_Node_children, _HG_Node_branch_len, HG_Node, _HG_Node_id_id, _HG_Node_id_id_type, HG_Node_id, _HG_Alignment_hg_id, _HG_Alignment_alignment, HG_Alignment, _HG_AlignmentSet__item_, HG_AlignmentSet, ] class NCBI_ID1Access: _name_ = u'NCBI-ID1Access' _oid_ = [] _obj_ = [ u'ID1server-request', u'ID1server-maxcomplex', u'Entry-complexities', u'ID1Seq-hist', u'ID1server-back', u'ID1server-debug', u'ID1blob-info', u'ID1SeqEntry-info', ] _type_ = [ u'ID1server-request', u'ID1server-maxcomplex', u'Entry-complexities', u'ID1Seq-hist', u'ID1server-back', u'ID1server-debug', u'ID1blob-info', u'ID1SeqEntry-info', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< ID1server-request >-----# ID1server_request = CHOICE(name=u'ID1server-request', mode=MODE_TYPE) _ID1server_request_init = NULL(name=u'init', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_request_getgi = CHOICE(name=u'getgi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID1server_request_getsefromgi = SEQ(name=u'getsefromgi', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'ID1server-maxcomplex'))) _ID1server_request_fini = NULL(name=u'fini', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_request_getseqidsfromgi = INT(name=u'getseqidsfromgi', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_request_getgihist = INT(name=u'getgihist', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_request_getgirev = INT(name=u'getgirev', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_request_getgistate = INT(name=u'getgistate', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_request_getsewithinfo = SEQ(name=u'getsewithinfo', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'ID1server-maxcomplex'))) _ID1server_request_getblobinfo = SEQ(name=u'getblobinfo', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'ID1server-maxcomplex'))) ID1server_request._cont = ASN1Dict([ (u'init', _ID1server_request_init), (u'getgi', _ID1server_request_getgi), (u'getsefromgi', _ID1server_request_getsefromgi), (u'fini', _ID1server_request_fini), (u'getseqidsfromgi', _ID1server_request_getseqidsfromgi), (u'getgihist', _ID1server_request_getgihist), (u'getgirev', _ID1server_request_getgirev), (u'getgistate', _ID1server_request_getgistate), (u'getsewithinfo', _ID1server_request_getsewithinfo), (u'getblobinfo', _ID1server_request_getblobinfo), ]) ID1server_request._ext = None #-----< ID1server-maxcomplex >-----# ID1server_maxcomplex = SEQ(name=u'ID1server-maxcomplex', mode=MODE_TYPE) _ID1server_maxcomplex_maxplex = INT(name=u'maxplex', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'Entry-complexities'))) _ID1server_maxcomplex_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_maxcomplex_ent = INT(name=u'ent', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID1server_maxcomplex_sat = STR_VIS(name=u'sat', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID1server_maxcomplex._cont = ASN1Dict([ (u'maxplex', _ID1server_maxcomplex_maxplex), (u'gi', _ID1server_maxcomplex_gi), (u'ent', _ID1server_maxcomplex_ent), (u'sat', _ID1server_maxcomplex_sat), ]) ID1server_maxcomplex._ext = None #-----< Entry-complexities >-----# Entry_complexities = INT(name=u'Entry-complexities', mode=MODE_TYPE) Entry_complexities._cont = ASN1Dict([(u'entry', 0), (u'bioseq', 1), (u'bioseq-set', 2), (u'nuc-prot', 3), (u'pub-set', 4)]) #-----< ID1Seq-hist >-----# ID1Seq_hist = SEQ(name=u'ID1Seq-hist', mode=MODE_TYPE) _ID1Seq_hist_hist = SEQ(name=u'hist', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-hist'))) ID1Seq_hist._cont = ASN1Dict([ (u'hist', _ID1Seq_hist_hist), ]) ID1Seq_hist._ext = None #-----< ID1server-back >-----# ID1server_back = CHOICE(name=u'ID1server-back', mode=MODE_TYPE) _ID1server_back_init = NULL(name=u'init', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_back_error = INT(name=u'error', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_back_gotgi = INT(name=u'gotgi', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_back_gotseqentry = CHOICE(name=u'gotseqentry', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _ID1server_back_gotdeadseqentry = CHOICE(name=u'gotdeadseqentry', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _ID1server_back_fini = NULL(name=u'fini', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_back_gistate = INT(name=u'gistate', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1server_back_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID1server_back_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID1server_back_ids._cont = __ID1server_back_ids__item_ _ID1server_back_gihist = SET_OF(name=u'gihist', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID1server_back_gihist__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID1Access', 'ID1Seq-hist'))) _ID1server_back_gihist._cont = __ID1server_back_gihist__item_ _ID1server_back_girevhist = SET_OF(name=u'girevhist', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID1server_back_girevhist__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID1Access', 'ID1Seq-hist'))) _ID1server_back_girevhist._cont = __ID1server_back_girevhist__item_ _ID1server_back_gotsewithinfo = SEQ(name=u'gotsewithinfo', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'ID1SeqEntry-info'))) _ID1server_back_gotblobinfo = SEQ(name=u'gotblobinfo', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'ID1blob-info'))) ID1server_back._cont = ASN1Dict([ (u'init', _ID1server_back_init), (u'error', _ID1server_back_error), (u'gotgi', _ID1server_back_gotgi), (u'gotseqentry', _ID1server_back_gotseqentry), (u'gotdeadseqentry', _ID1server_back_gotdeadseqentry), (u'fini', _ID1server_back_fini), (u'gistate', _ID1server_back_gistate), (u'ids', _ID1server_back_ids), (u'gihist', _ID1server_back_gihist), (u'girevhist', _ID1server_back_girevhist), (u'gotsewithinfo', _ID1server_back_gotsewithinfo), (u'gotblobinfo', _ID1server_back_gotblobinfo), ]) ID1server_back._ext = None #-----< ID1server-debug >-----# ID1server_debug = SET_OF(name=u'ID1server-debug', mode=MODE_TYPE) _ID1server_debug__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID1Access', 'ID1server-back'))) ID1server_debug._cont = _ID1server_debug__item_ #-----< ID1blob-info >-----# ID1blob_info = SEQ(name=u'ID1blob-info', mode=MODE_TYPE) _ID1blob_info_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_sat = INT(name=u'sat', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_sat_key = INT(name=u'sat-key', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_satname = STR_VIS(name=u'satname', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_suppress = INT(name=u'suppress', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_withdrawn = INT(name=u'withdrawn', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_confidential = INT(name=u'confidential', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_blob_state = INT(name=u'blob-state', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID1blob_info_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID1blob_info_extfeatmask = INT(name=u'extfeatmask', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID1blob_info._cont = ASN1Dict([ (u'gi', _ID1blob_info_gi), (u'sat', _ID1blob_info_sat), (u'sat-key', _ID1blob_info_sat_key), (u'satname', _ID1blob_info_satname), (u'suppress', _ID1blob_info_suppress), (u'withdrawn', _ID1blob_info_withdrawn), (u'confidential', _ID1blob_info_confidential), (u'blob-state', _ID1blob_info_blob_state), (u'comment', _ID1blob_info_comment), (u'extfeatmask', _ID1blob_info_extfeatmask), ]) ID1blob_info._ext = None #-----< ID1SeqEntry-info >-----# ID1SeqEntry_info = SEQ(name=u'ID1SeqEntry-info', mode=MODE_TYPE) _ID1SeqEntry_info_blob_info = SEQ(name=u'blob-info', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID1Access', 'ID1blob-info'))) _ID1SeqEntry_info_blob = CHOICE(name=u'blob', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry')), opt=True) ID1SeqEntry_info._cont = ASN1Dict([ (u'blob-info', _ID1SeqEntry_info_blob_info), (u'blob', _ID1SeqEntry_info_blob), ]) ID1SeqEntry_info._ext = None _all_ = [ _ID1server_request_init, _ID1server_request_getgi, _ID1server_request_getsefromgi, _ID1server_request_fini, _ID1server_request_getseqidsfromgi, _ID1server_request_getgihist, _ID1server_request_getgirev, _ID1server_request_getgistate, _ID1server_request_getsewithinfo, _ID1server_request_getblobinfo, ID1server_request, _ID1server_maxcomplex_maxplex, _ID1server_maxcomplex_gi, _ID1server_maxcomplex_ent, _ID1server_maxcomplex_sat, ID1server_maxcomplex, Entry_complexities, _ID1Seq_hist_hist, ID1Seq_hist, _ID1server_back_init, _ID1server_back_error, _ID1server_back_gotgi, _ID1server_back_gotseqentry, _ID1server_back_gotdeadseqentry, _ID1server_back_fini, _ID1server_back_gistate, __ID1server_back_ids__item_, _ID1server_back_ids, __ID1server_back_gihist__item_, _ID1server_back_gihist, __ID1server_back_girevhist__item_, _ID1server_back_girevhist, _ID1server_back_gotsewithinfo, _ID1server_back_gotblobinfo, ID1server_back, _ID1server_debug__item_, ID1server_debug, _ID1blob_info_gi, _ID1blob_info_sat, _ID1blob_info_sat_key, _ID1blob_info_satname, _ID1blob_info_suppress, _ID1blob_info_withdrawn, _ID1blob_info_confidential, _ID1blob_info_blob_state, _ID1blob_info_comment, _ID1blob_info_extfeatmask, ID1blob_info, _ID1SeqEntry_info_blob_info, _ID1SeqEntry_info_blob, ID1SeqEntry_info, ] class NCBI_ID2Access: _name_ = u'NCBI-ID2Access' _oid_ = [] _obj_ = [ u'ID2-Request-Packet', u'ID2-Request', u'ID2-Request-Get-Packages', u'ID2-Request-Get-Seq-id', u'ID2-Seq-id', u'ID2-Request-Get-Blob-Id', u'ID2-Request-Get-Blob-Info', u'ID2-Request-ReGet-Blob', u'ID2S-Request-Get-Chunks', u'ID2-Get-Blob-Details', u'ID2-Reply', u'ID2-Error', u'ID2-Reply-Get-Package', u'ID2-Reply-Get-Seq-id', u'ID2-Blob-State', u'ID2-Reply-Get-Blob-Id', u'ID2-Reply-Get-Blob-Seq-ids', u'ID2-Reply-Get-Blob', u'ID2S-Reply-Get-Split-Info', u'ID2-Reply-ReGet-Blob', u'ID2S-Reply-Get-Chunk', u'ID2-Reply-Data', u'ID2-Blob-Seq-ids', u'ID2-Blob-Seq-id', u'ID2-Blob-Id', u'ID2-Params', u'ID2-Param', ] _type_ = [ u'ID2-Request-Packet', u'ID2-Request', u'ID2-Request-Get-Packages', u'ID2-Request-Get-Seq-id', u'ID2-Seq-id', u'ID2-Request-Get-Blob-Id', u'ID2-Request-Get-Blob-Info', u'ID2-Request-ReGet-Blob', u'ID2S-Request-Get-Chunks', u'ID2-Get-Blob-Details', u'ID2-Reply', u'ID2-Error', u'ID2-Reply-Get-Package', u'ID2-Reply-Get-Seq-id', u'ID2-Blob-State', u'ID2-Reply-Get-Blob-Id', u'ID2-Reply-Get-Blob-Seq-ids', u'ID2-Reply-Get-Blob', u'ID2S-Reply-Get-Split-Info', u'ID2-Reply-ReGet-Blob', u'ID2S-Reply-Get-Chunk', u'ID2-Reply-Data', u'ID2-Blob-Seq-ids', u'ID2-Blob-Seq-id', u'ID2-Blob-Id', u'ID2-Params', u'ID2-Param', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< ID2-Request-Packet >-----# ID2_Request_Packet = SEQ_OF(name=u'ID2-Request-Packet', mode=MODE_TYPE) _ID2_Request_Packet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request'))) ID2_Request_Packet._cont = _ID2_Request_Packet__item_ #-----< ID2-Request >-----# ID2_Request = SEQ(name=u'ID2-Request', mode=MODE_TYPE) _ID2_Request_serial_number = INT(name=u'serial-number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Request_params = SEQ_OF(name=u'params', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Params')), opt=True) _ID2_Request_request = CHOICE(name=u'request', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __ID2_Request_request_init = NULL(name=u'init', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2_Request_request_get_packages = SEQ(name=u'get-packages', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Packages'))) __ID2_Request_request_get_seq_id = SEQ(name=u'get-seq-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Seq-id'))) __ID2_Request_request_get_blob_id = SEQ(name=u'get-blob-id', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Blob-Id'))) __ID2_Request_request_get_blob_info = SEQ(name=u'get-blob-info', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Blob-Info'))) __ID2_Request_request_reget_blob = SEQ(name=u'reget-blob', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-ReGet-Blob'))) __ID2_Request_request_get_chunks = SEQ(name=u'get-chunks', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2S-Request-Get-Chunks'))) _ID2_Request_request._cont = ASN1Dict([ (u'init', __ID2_Request_request_init), (u'get-packages', __ID2_Request_request_get_packages), (u'get-seq-id', __ID2_Request_request_get_seq_id), (u'get-blob-id', __ID2_Request_request_get_blob_id), (u'get-blob-info', __ID2_Request_request_get_blob_info), (u'reget-blob', __ID2_Request_request_reget_blob), (u'get-chunks', __ID2_Request_request_get_chunks), ]) _ID2_Request_request._ext = None ID2_Request._cont = ASN1Dict([ (u'serial-number', _ID2_Request_serial_number), (u'params', _ID2_Request_params), (u'request', _ID2_Request_request), ]) ID2_Request._ext = None #-----< ID2-Request-Get-Packages >-----# ID2_Request_Get_Packages = SEQ(name=u'ID2-Request-Get-Packages', mode=MODE_TYPE) _ID2_Request_Get_Packages_names = SEQ_OF(name=u'names', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2_Request_Get_Packages_names__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _ID2_Request_Get_Packages_names._cont = __ID2_Request_Get_Packages_names__item_ _ID2_Request_Get_Packages_no_contents = NULL(name=u'no-contents', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Request_Get_Packages._cont = ASN1Dict([ (u'names', _ID2_Request_Get_Packages_names), (u'no-contents', _ID2_Request_Get_Packages_no_contents), ]) ID2_Request_Get_Packages._ext = None #-----< ID2-Request-Get-Seq-id >-----# ID2_Request_Get_Seq_id = SEQ(name=u'ID2-Request-Get-Seq-id', mode=MODE_TYPE) _ID2_Request_Get_Seq_id_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Seq-id'))) _ID2_Request_Get_Seq_id_seq_id_type = INT(name=u'seq-id-type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Request_Get_Seq_id_seq_id_type._cont = ASN1Dict([(u'any', 0), (u'gi', 1), (u'text', 2), (u'general', 4), (u'all', 127), (u'label', 128), (u'taxid', 256), (u'hash', 512)]) ID2_Request_Get_Seq_id._cont = ASN1Dict([ (u'seq-id', _ID2_Request_Get_Seq_id_seq_id), (u'seq-id-type', _ID2_Request_Get_Seq_id_seq_id_type), ]) ID2_Request_Get_Seq_id._ext = None #-----< ID2-Seq-id >-----# ID2_Seq_id = CHOICE(name=u'ID2-Seq-id', mode=MODE_TYPE) _ID2_Seq_id_string = STR_VIS(name=u'string', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Seq_id_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) ID2_Seq_id._cont = ASN1Dict([ (u'string', _ID2_Seq_id_string), (u'seq-id', _ID2_Seq_id_seq_id), ]) ID2_Seq_id._ext = None #-----< ID2-Request-Get-Blob-Id >-----# ID2_Request_Get_Blob_Id = SEQ(name=u'ID2-Request-Get-Blob-Id', mode=MODE_TYPE) _ID2_Request_Get_Blob_Id_seq_id = SEQ(name=u'seq-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Seq-id'))) _ID2_Request_Get_Blob_Id_sources = SEQ_OF(name=u'sources', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2_Request_Get_Blob_Id_sources__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _ID2_Request_Get_Blob_Id_sources._cont = __ID2_Request_Get_Blob_Id_sources__item_ _ID2_Request_Get_Blob_Id_external = NULL(name=u'external', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Request_Get_Blob_Id._cont = ASN1Dict([ (u'seq-id', _ID2_Request_Get_Blob_Id_seq_id), (u'sources', _ID2_Request_Get_Blob_Id_sources), (u'external', _ID2_Request_Get_Blob_Id_external), ]) ID2_Request_Get_Blob_Id._ext = None #-----< ID2-Request-Get-Blob-Info >-----# ID2_Request_Get_Blob_Info = SEQ(name=u'ID2-Request-Get-Blob-Info', mode=MODE_TYPE) _ID2_Request_Get_Blob_Info_blob_id = CHOICE(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __ID2_Request_Get_Blob_Info_blob_id_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) __ID2_Request_Get_Blob_Info_blob_id_resolve = SEQ(name=u'resolve', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___ID2_Request_Get_Blob_Info_blob_id_resolve_request = SEQ(name=u'request', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Blob-Id'))) ___ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs = SEQ_OF(name=u'exclude-blobs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) ___ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs._cont = ____ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs__item_ __ID2_Request_Get_Blob_Info_blob_id_resolve._cont = ASN1Dict([ (u'request', ___ID2_Request_Get_Blob_Info_blob_id_resolve_request), (u'exclude-blobs', ___ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs), ]) __ID2_Request_Get_Blob_Info_blob_id_resolve._ext = None _ID2_Request_Get_Blob_Info_blob_id._cont = ASN1Dict([ (u'blob-id', __ID2_Request_Get_Blob_Info_blob_id_blob_id), (u'resolve', __ID2_Request_Get_Blob_Info_blob_id_resolve), ]) _ID2_Request_Get_Blob_Info_blob_id._ext = None _ID2_Request_Get_Blob_Info_get_seq_ids = NULL(name=u'get-seq-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Request_Get_Blob_Info_get_data = SEQ(name=u'get-data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Get-Blob-Details')), opt=True) ID2_Request_Get_Blob_Info._cont = ASN1Dict([ (u'blob-id', _ID2_Request_Get_Blob_Info_blob_id), (u'get-seq-ids', _ID2_Request_Get_Blob_Info_get_seq_ids), (u'get-data', _ID2_Request_Get_Blob_Info_get_data), ]) ID2_Request_Get_Blob_Info._ext = None #-----< ID2-Request-ReGet-Blob >-----# ID2_Request_ReGet_Blob = SEQ(name=u'ID2-Request-ReGet-Blob', mode=MODE_TYPE) _ID2_Request_ReGet_Blob_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2_Request_ReGet_Blob_split_version = INT(name=u'split-version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Request_ReGet_Blob_offset = INT(name=u'offset', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ID2_Request_ReGet_Blob._cont = ASN1Dict([ (u'blob-id', _ID2_Request_ReGet_Blob_blob_id), (u'split-version', _ID2_Request_ReGet_Blob_split_version), (u'offset', _ID2_Request_ReGet_Blob_offset), ]) ID2_Request_ReGet_Blob._ext = None #-----< ID2S-Request-Get-Chunks >-----# ID2S_Request_Get_Chunks = SEQ(name=u'ID2S-Request-Get-Chunks', mode=MODE_TYPE) _ID2S_Request_Get_Chunks_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2S_Request_Get_Chunks_chunks = SEQ_OF(name=u'chunks', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Request_Get_Chunks_chunks__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Chunk-Id'))) _ID2S_Request_Get_Chunks_chunks._cont = __ID2S_Request_Get_Chunks_chunks__item_ _ID2S_Request_Get_Chunks_split_version = INT(name=u'split-version', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2S_Request_Get_Chunks._cont = ASN1Dict([ (u'blob-id', _ID2S_Request_Get_Chunks_blob_id), (u'chunks', _ID2S_Request_Get_Chunks_chunks), (u'split-version', _ID2S_Request_Get_Chunks_split_version), ]) ID2S_Request_Get_Chunks._ext = None #-----< ID2-Get-Blob-Details >-----# ID2_Get_Blob_Details = SEQ(name=u'ID2-Get-Blob-Details', mode=MODE_TYPE) _ID2_Get_Blob_Details_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) _ID2_Get_Blob_Details_seq_class_level = INT(name=u'seq-class-level', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _ID2_Get_Blob_Details_descr_level = INT(name=u'descr-level', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _ID2_Get_Blob_Details_descr_type_mask = INT(name=u'descr-type-mask', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Get_Blob_Details_annot_type_mask = INT(name=u'annot-type-mask', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Get_Blob_Details_feat_type_mask = INT(name=u'feat-type-mask', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Get_Blob_Details_sequence_level = ENUM(name=u'sequence-level', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'none') _ID2_Get_Blob_Details_sequence_level._cont = ASN1Dict([(u'none', 0), (u'seq-map', 1), (u'seq-data', 2)]) _ID2_Get_Blob_Details_sequence_level._ext = None ID2_Get_Blob_Details._cont = ASN1Dict([ (u'location', _ID2_Get_Blob_Details_location), (u'seq-class-level', _ID2_Get_Blob_Details_seq_class_level), (u'descr-level', _ID2_Get_Blob_Details_descr_level), (u'descr-type-mask', _ID2_Get_Blob_Details_descr_type_mask), (u'annot-type-mask', _ID2_Get_Blob_Details_annot_type_mask), (u'feat-type-mask', _ID2_Get_Blob_Details_feat_type_mask), (u'sequence-level', _ID2_Get_Blob_Details_sequence_level), ]) ID2_Get_Blob_Details._ext = None #-----< ID2-Reply >-----# ID2_Reply = SEQ(name=u'ID2-Reply', mode=MODE_TYPE) _ID2_Reply_serial_number = INT(name=u'serial-number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Reply_params = SEQ_OF(name=u'params', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Params')), opt=True) _ID2_Reply_error = SEQ_OF(name=u'error', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2_Reply_error__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Error'))) _ID2_Reply_error._cont = __ID2_Reply_error__item_ _ID2_Reply_end_of_reply = NULL(name=u'end-of-reply', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Reply_reply = CHOICE(name=u'reply', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __ID2_Reply_reply_init = NULL(name=u'init', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2_Reply_reply_empty = NULL(name=u'empty', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2_Reply_reply_get_package = SEQ(name=u'get-package', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Get-Package'))) __ID2_Reply_reply_get_seq_id = SEQ(name=u'get-seq-id', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Get-Seq-id'))) __ID2_Reply_reply_get_blob_id = SEQ(name=u'get-blob-id', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Get-Blob-Id'))) __ID2_Reply_reply_get_blob_seq_ids = SEQ(name=u'get-blob-seq-ids', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Get-Blob-Seq-ids'))) __ID2_Reply_reply_get_blob = SEQ(name=u'get-blob', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Get-Blob'))) __ID2_Reply_reply_reget_blob = SEQ(name=u'reget-blob', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-ReGet-Blob'))) __ID2_Reply_reply_get_split_info = SEQ(name=u'get-split-info', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2S-Reply-Get-Split-Info'))) __ID2_Reply_reply_get_chunk = SEQ(name=u'get-chunk', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2S-Reply-Get-Chunk'))) _ID2_Reply_reply._cont = ASN1Dict([ (u'init', __ID2_Reply_reply_init), (u'empty', __ID2_Reply_reply_empty), (u'get-package', __ID2_Reply_reply_get_package), (u'get-seq-id', __ID2_Reply_reply_get_seq_id), (u'get-blob-id', __ID2_Reply_reply_get_blob_id), (u'get-blob-seq-ids', __ID2_Reply_reply_get_blob_seq_ids), (u'get-blob', __ID2_Reply_reply_get_blob), (u'reget-blob', __ID2_Reply_reply_reget_blob), (u'get-split-info', __ID2_Reply_reply_get_split_info), (u'get-chunk', __ID2_Reply_reply_get_chunk), ]) _ID2_Reply_reply._ext = None _ID2_Reply_discard = ENUM(name=u'discard', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Reply_discard._cont = ASN1Dict([(u'reply', 0), (u'last-octet-string', 1), (u'nothing', 2)]) _ID2_Reply_discard._ext = None ID2_Reply._cont = ASN1Dict([ (u'serial-number', _ID2_Reply_serial_number), (u'params', _ID2_Reply_params), (u'error', _ID2_Reply_error), (u'end-of-reply', _ID2_Reply_end_of_reply), (u'reply', _ID2_Reply_reply), (u'discard', _ID2_Reply_discard), ]) ID2_Reply._ext = None #-----< ID2-Error >-----# ID2_Error = SEQ(name=u'ID2-Error', mode=MODE_TYPE) _ID2_Error_severity = ENUM(name=u'severity', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Error_severity._cont = ASN1Dict([(u'warning', 1), (u'failed-command', 2), (u'failed-connection', 3), (u'failed-server', 4), (u'no-data', 5), (u'restricted-data', 6), (u'unsupported-command', 7), (u'invalid-arguments', 8)]) _ID2_Error_severity._ext = None _ID2_Error_retry_delay = INT(name=u'retry-delay', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Error_message = STR_VIS(name=u'message', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Error._cont = ASN1Dict([ (u'severity', _ID2_Error_severity), (u'retry-delay', _ID2_Error_retry_delay), (u'message', _ID2_Error_message), ]) ID2_Error._ext = None #-----< ID2-Reply-Get-Package >-----# ID2_Reply_Get_Package = SEQ(name=u'ID2-Reply-Get-Package', mode=MODE_TYPE) _ID2_Reply_Get_Package_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Reply_Get_Package_params = SEQ_OF(name=u'params', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Params')), opt=True) ID2_Reply_Get_Package._cont = ASN1Dict([ (u'name', _ID2_Reply_Get_Package_name), (u'params', _ID2_Reply_Get_Package_params), ]) ID2_Reply_Get_Package._ext = None #-----< ID2-Reply-Get-Seq-id >-----# ID2_Reply_Get_Seq_id = SEQ(name=u'ID2-Reply-Get-Seq-id', mode=MODE_TYPE) _ID2_Reply_Get_Seq_id_request = SEQ(name=u'request', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Request-Get-Seq-id'))) _ID2_Reply_Get_Seq_id_seq_id = SEQ_OF(name=u'seq-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2_Reply_Get_Seq_id_seq_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2_Reply_Get_Seq_id_seq_id._cont = __ID2_Reply_Get_Seq_id_seq_id__item_ _ID2_Reply_Get_Seq_id_end_of_reply = NULL(name=u'end-of-reply', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Reply_Get_Seq_id._cont = ASN1Dict([ (u'request', _ID2_Reply_Get_Seq_id_request), (u'seq-id', _ID2_Reply_Get_Seq_id_seq_id), (u'end-of-reply', _ID2_Reply_Get_Seq_id_end_of_reply), ]) ID2_Reply_Get_Seq_id._ext = None #-----< ID2-Blob-State >-----# ID2_Blob_State = ENUM(name=u'ID2-Blob-State', mode=MODE_TYPE) ID2_Blob_State._cont = ASN1Dict([(u'live', 0), (u'suppressed-temp', 1), (u'suppressed', 2), (u'dead', 3), (u'protected', 4), (u'withdrawn', 5)]) ID2_Blob_State._ext = None #-----< ID2-Reply-Get-Blob-Id >-----# ID2_Reply_Get_Blob_Id = SEQ(name=u'ID2-Reply-Get-Blob-Id', mode=MODE_TYPE) _ID2_Reply_Get_Blob_Id_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2_Reply_Get_Blob_Id_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id')), opt=True) _ID2_Reply_Get_Blob_Id_split_version = INT(name=u'split-version', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Reply_Get_Blob_Id_annot_info = SEQ_OF(name=u'annot-info', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2_Reply_Get_Blob_Id_annot_info__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-annot-Info'))) _ID2_Reply_Get_Blob_Id_annot_info._cont = __ID2_Reply_Get_Blob_Id_annot_info__item_ _ID2_Reply_Get_Blob_Id_end_of_reply = NULL(name=u'end-of-reply', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2_Reply_Get_Blob_Id_blob_state = INT(name=u'blob-state', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Reply_Get_Blob_Id._cont = ASN1Dict([ (u'seq-id', _ID2_Reply_Get_Blob_Id_seq_id), (u'blob-id', _ID2_Reply_Get_Blob_Id_blob_id), (u'split-version', _ID2_Reply_Get_Blob_Id_split_version), (u'annot-info', _ID2_Reply_Get_Blob_Id_annot_info), (u'end-of-reply', _ID2_Reply_Get_Blob_Id_end_of_reply), (u'blob-state', _ID2_Reply_Get_Blob_Id_blob_state), ]) ID2_Reply_Get_Blob_Id._ext = None #-----< ID2-Reply-Get-Blob-Seq-ids >-----# ID2_Reply_Get_Blob_Seq_ids = SEQ(name=u'ID2-Reply-Get-Blob-Seq-ids', mode=MODE_TYPE) _ID2_Reply_Get_Blob_Seq_ids_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2_Reply_Get_Blob_Seq_ids_ids = SEQ(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Data')), opt=True) ID2_Reply_Get_Blob_Seq_ids._cont = ASN1Dict([ (u'blob-id', _ID2_Reply_Get_Blob_Seq_ids_blob_id), (u'ids', _ID2_Reply_Get_Blob_Seq_ids_ids), ]) ID2_Reply_Get_Blob_Seq_ids._ext = None #-----< ID2-Reply-Get-Blob >-----# ID2_Reply_Get_Blob = SEQ(name=u'ID2-Reply-Get-Blob', mode=MODE_TYPE) _ID2_Reply_Get_Blob_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2_Reply_Get_Blob_split_version = INT(name=u'split-version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Reply_Get_Blob_data = SEQ(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Data')), opt=True) _ID2_Reply_Get_Blob_blob_state = INT(name=u'blob-state', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Reply_Get_Blob._cont = ASN1Dict([ (u'blob-id', _ID2_Reply_Get_Blob_blob_id), (u'split-version', _ID2_Reply_Get_Blob_split_version), (u'data', _ID2_Reply_Get_Blob_data), (u'blob-state', _ID2_Reply_Get_Blob_blob_state), ]) ID2_Reply_Get_Blob._ext = None #-----< ID2S-Reply-Get-Split-Info >-----# ID2S_Reply_Get_Split_Info = SEQ(name=u'ID2S-Reply-Get-Split-Info', mode=MODE_TYPE) _ID2S_Reply_Get_Split_Info_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2S_Reply_Get_Split_Info_split_version = INT(name=u'split-version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Reply_Get_Split_Info_data = SEQ(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Data')), opt=True) _ID2S_Reply_Get_Split_Info_blob_state = INT(name=u'blob-state', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2S_Reply_Get_Split_Info._cont = ASN1Dict([ (u'blob-id', _ID2S_Reply_Get_Split_Info_blob_id), (u'split-version', _ID2S_Reply_Get_Split_Info_split_version), (u'data', _ID2S_Reply_Get_Split_Info_data), (u'blob-state', _ID2S_Reply_Get_Split_Info_blob_state), ]) ID2S_Reply_Get_Split_Info._ext = None #-----< ID2-Reply-ReGet-Blob >-----# ID2_Reply_ReGet_Blob = SEQ(name=u'ID2-Reply-ReGet-Blob', mode=MODE_TYPE) _ID2_Reply_ReGet_Blob_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2_Reply_ReGet_Blob_split_version = INT(name=u'split-version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Reply_ReGet_Blob_offset = INT(name=u'offset', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Reply_ReGet_Blob_data = SEQ(name=u'data', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Data')), opt=True) ID2_Reply_ReGet_Blob._cont = ASN1Dict([ (u'blob-id', _ID2_Reply_ReGet_Blob_blob_id), (u'split-version', _ID2_Reply_ReGet_Blob_split_version), (u'offset', _ID2_Reply_ReGet_Blob_offset), (u'data', _ID2_Reply_ReGet_Blob_data), ]) ID2_Reply_ReGet_Blob._ext = None #-----< ID2S-Reply-Get-Chunk >-----# ID2S_Reply_Get_Chunk = SEQ(name=u'ID2S-Reply-Get-Chunk', mode=MODE_TYPE) _ID2S_Reply_Get_Chunk_blob_id = SEQ(name=u'blob-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Id'))) _ID2S_Reply_Get_Chunk_chunk_id = INT(name=u'chunk-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Chunk-Id'))) _ID2S_Reply_Get_Chunk_data = SEQ(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Reply-Data')), opt=True) ID2S_Reply_Get_Chunk._cont = ASN1Dict([ (u'blob-id', _ID2S_Reply_Get_Chunk_blob_id), (u'chunk-id', _ID2S_Reply_Get_Chunk_chunk_id), (u'data', _ID2S_Reply_Get_Chunk_data), ]) ID2S_Reply_Get_Chunk._ext = None #-----< ID2-Reply-Data >-----# ID2_Reply_Data = SEQ(name=u'ID2-Reply-Data', mode=MODE_TYPE) _ID2_Reply_Data_data_type = INT(name=u'data-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Reply_Data_data_type._cont = ASN1Dict([(u'seq-entry', 0), (u'seq-annot', 1), (u'id2s-split-info', 2), (u'id2s-chunk', 3)]) _ID2_Reply_Data_data_format = INT(name=u'data-format', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Reply_Data_data_format._cont = ASN1Dict([(u'asn-binary', 0), (u'asn-text', 1), (u'xml', 2)]) _ID2_Reply_Data_data_compression = INT(name=u'data-compression', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Reply_Data_data_compression._cont = ASN1Dict([(u'none', 0), (u'gzip', 1), (u'nlmzip', 2), (u'bzip2', 3)]) _ID2_Reply_Data_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2_Reply_Data_data__item_ = OCT_STR(name='_item_', mode=MODE_TYPE) _ID2_Reply_Data_data._cont = __ID2_Reply_Data_data__item_ ID2_Reply_Data._cont = ASN1Dict([ (u'data-type', _ID2_Reply_Data_data_type), (u'data-format', _ID2_Reply_Data_data_format), (u'data-compression', _ID2_Reply_Data_data_compression), (u'data', _ID2_Reply_Data_data), ]) ID2_Reply_Data._ext = None #-----< ID2-Blob-Seq-ids >-----# ID2_Blob_Seq_ids = SEQ_OF(name=u'ID2-Blob-Seq-ids', mode=MODE_TYPE) _ID2_Blob_Seq_ids__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Blob-Seq-id'))) ID2_Blob_Seq_ids._cont = _ID2_Blob_Seq_ids__item_ #-----< ID2-Blob-Seq-id >-----# ID2_Blob_Seq_id = SEQ(name=u'ID2-Blob-Seq-id', mode=MODE_TYPE) _ID2_Blob_Seq_id_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2_Blob_Seq_id_replaced = NULL(name=u'replaced', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Blob_Seq_id._cont = ASN1Dict([ (u'seq-id', _ID2_Blob_Seq_id_seq_id), (u'replaced', _ID2_Blob_Seq_id_replaced), ]) ID2_Blob_Seq_id._ext = None #-----< ID2-Blob-Id >-----# ID2_Blob_Id = SEQ(name=u'ID2-Blob-Id', mode=MODE_TYPE) _ID2_Blob_Id_sat = INT(name=u'sat', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Blob_Id_sub_sat = INT(name=u'sub-sat', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _ID2_Blob_Id_sub_sat._cont = ASN1Dict([(u'main', 0), (u'snp', 1), (u'snp-graph', 4), (u'cdd', 8), (u'mgc', 16), (u'hprd', 32), (u'sts', 64), (u'trna', 128), (u'exon', 512)]) _ID2_Blob_Id_sat_key = INT(name=u'sat-key', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Blob_Id_version = INT(name=u'version', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2_Blob_Id._cont = ASN1Dict([ (u'sat', _ID2_Blob_Id_sat), (u'sub-sat', _ID2_Blob_Id_sub_sat), (u'sat-key', _ID2_Blob_Id_sat_key), (u'version', _ID2_Blob_Id_version), ]) ID2_Blob_Id._ext = None #-----< ID2-Params >-----# ID2_Params = SEQ_OF(name=u'ID2-Params', mode=MODE_TYPE) _ID2_Params__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ID2Access', 'ID2-Param'))) ID2_Params._cont = _ID2_Params__item_ #-----< ID2-Param >-----# ID2_Param = SEQ(name=u'ID2-Param', mode=MODE_TYPE) _ID2_Param_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2_Param_value = SEQ_OF(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2_Param_value__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _ID2_Param_value._cont = __ID2_Param_value__item_ _ID2_Param_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'set-value') _ID2_Param_type._cont = ASN1Dict([(u'set-value', 1), (u'get-value', 2), (u'force-value', 3), (u'use-package', 4)]) _ID2_Param_type._ext = None ID2_Param._cont = ASN1Dict([ (u'name', _ID2_Param_name), (u'value', _ID2_Param_value), (u'type', _ID2_Param_type), ]) ID2_Param._ext = None _all_ = [ _ID2_Request_Packet__item_, ID2_Request_Packet, _ID2_Request_serial_number, _ID2_Request_params, __ID2_Request_request_init, __ID2_Request_request_get_packages, __ID2_Request_request_get_seq_id, __ID2_Request_request_get_blob_id, __ID2_Request_request_get_blob_info, __ID2_Request_request_reget_blob, __ID2_Request_request_get_chunks, _ID2_Request_request, ID2_Request, __ID2_Request_Get_Packages_names__item_, _ID2_Request_Get_Packages_names, _ID2_Request_Get_Packages_no_contents, ID2_Request_Get_Packages, _ID2_Request_Get_Seq_id_seq_id, _ID2_Request_Get_Seq_id_seq_id_type, ID2_Request_Get_Seq_id, _ID2_Seq_id_string, _ID2_Seq_id_seq_id, ID2_Seq_id, _ID2_Request_Get_Blob_Id_seq_id, __ID2_Request_Get_Blob_Id_sources__item_, _ID2_Request_Get_Blob_Id_sources, _ID2_Request_Get_Blob_Id_external, ID2_Request_Get_Blob_Id, __ID2_Request_Get_Blob_Info_blob_id_blob_id, ___ID2_Request_Get_Blob_Info_blob_id_resolve_request, ____ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs__item_, ___ID2_Request_Get_Blob_Info_blob_id_resolve_exclude_blobs, __ID2_Request_Get_Blob_Info_blob_id_resolve, _ID2_Request_Get_Blob_Info_blob_id, _ID2_Request_Get_Blob_Info_get_seq_ids, _ID2_Request_Get_Blob_Info_get_data, ID2_Request_Get_Blob_Info, _ID2_Request_ReGet_Blob_blob_id, _ID2_Request_ReGet_Blob_split_version, _ID2_Request_ReGet_Blob_offset, ID2_Request_ReGet_Blob, _ID2S_Request_Get_Chunks_blob_id, __ID2S_Request_Get_Chunks_chunks__item_, _ID2S_Request_Get_Chunks_chunks, _ID2S_Request_Get_Chunks_split_version, ID2S_Request_Get_Chunks, _ID2_Get_Blob_Details_location, _ID2_Get_Blob_Details_seq_class_level, _ID2_Get_Blob_Details_descr_level, _ID2_Get_Blob_Details_descr_type_mask, _ID2_Get_Blob_Details_annot_type_mask, _ID2_Get_Blob_Details_feat_type_mask, _ID2_Get_Blob_Details_sequence_level, ID2_Get_Blob_Details, _ID2_Reply_serial_number, _ID2_Reply_params, __ID2_Reply_error__item_, _ID2_Reply_error, _ID2_Reply_end_of_reply, __ID2_Reply_reply_init, __ID2_Reply_reply_empty, __ID2_Reply_reply_get_package, __ID2_Reply_reply_get_seq_id, __ID2_Reply_reply_get_blob_id, __ID2_Reply_reply_get_blob_seq_ids, __ID2_Reply_reply_get_blob, __ID2_Reply_reply_reget_blob, __ID2_Reply_reply_get_split_info, __ID2_Reply_reply_get_chunk, _ID2_Reply_reply, _ID2_Reply_discard, ID2_Reply, _ID2_Error_severity, _ID2_Error_retry_delay, _ID2_Error_message, ID2_Error, _ID2_Reply_Get_Package_name, _ID2_Reply_Get_Package_params, ID2_Reply_Get_Package, _ID2_Reply_Get_Seq_id_request, __ID2_Reply_Get_Seq_id_seq_id__item_, _ID2_Reply_Get_Seq_id_seq_id, _ID2_Reply_Get_Seq_id_end_of_reply, ID2_Reply_Get_Seq_id, ID2_Blob_State, _ID2_Reply_Get_Blob_Id_seq_id, _ID2_Reply_Get_Blob_Id_blob_id, _ID2_Reply_Get_Blob_Id_split_version, __ID2_Reply_Get_Blob_Id_annot_info__item_, _ID2_Reply_Get_Blob_Id_annot_info, _ID2_Reply_Get_Blob_Id_end_of_reply, _ID2_Reply_Get_Blob_Id_blob_state, ID2_Reply_Get_Blob_Id, _ID2_Reply_Get_Blob_Seq_ids_blob_id, _ID2_Reply_Get_Blob_Seq_ids_ids, ID2_Reply_Get_Blob_Seq_ids, _ID2_Reply_Get_Blob_blob_id, _ID2_Reply_Get_Blob_split_version, _ID2_Reply_Get_Blob_data, _ID2_Reply_Get_Blob_blob_state, ID2_Reply_Get_Blob, _ID2S_Reply_Get_Split_Info_blob_id, _ID2S_Reply_Get_Split_Info_split_version, _ID2S_Reply_Get_Split_Info_data, _ID2S_Reply_Get_Split_Info_blob_state, ID2S_Reply_Get_Split_Info, _ID2_Reply_ReGet_Blob_blob_id, _ID2_Reply_ReGet_Blob_split_version, _ID2_Reply_ReGet_Blob_offset, _ID2_Reply_ReGet_Blob_data, ID2_Reply_ReGet_Blob, _ID2S_Reply_Get_Chunk_blob_id, _ID2S_Reply_Get_Chunk_chunk_id, _ID2S_Reply_Get_Chunk_data, ID2S_Reply_Get_Chunk, _ID2_Reply_Data_data_type, _ID2_Reply_Data_data_format, _ID2_Reply_Data_data_compression, __ID2_Reply_Data_data__item_, _ID2_Reply_Data_data, ID2_Reply_Data, _ID2_Blob_Seq_ids__item_, ID2_Blob_Seq_ids, _ID2_Blob_Seq_id_seq_id, _ID2_Blob_Seq_id_replaced, ID2_Blob_Seq_id, _ID2_Blob_Id_sat, _ID2_Blob_Id_sub_sat, _ID2_Blob_Id_sat_key, _ID2_Blob_Id_version, ID2_Blob_Id, _ID2_Params__item_, ID2_Params, _ID2_Param_name, __ID2_Param_value__item_, _ID2_Param_value, _ID2_Param_type, ID2_Param, ] class INSD_INSDSeq: _name_ = u'INSD-INSDSeq' _oid_ = [] _obj_ = [ u'INSDSet', u'INSDSeq', u'INSDSeqid', u'INSDSecondary-accn', u'INSDKeyword', u'INSDReference', u'INSDAuthor', u'INSDXref', u'INSDComment', u'INSDCommentParagraph', u'INSDStrucComment', u'INSDStrucCommentItem', u'INSDFeatureSet', u'INSDFeature', u'INSDInterval', u'INSDQualifier', u'INSDAltSeqData', u'INSDAltSeqItem', ] _type_ = [ u'INSDSet', u'INSDSeq', u'INSDSeqid', u'INSDSecondary-accn', u'INSDKeyword', u'INSDReference', u'INSDAuthor', u'INSDXref', u'INSDComment', u'INSDCommentParagraph', u'INSDStrucComment', u'INSDStrucCommentItem', u'INSDFeatureSet', u'INSDFeature', u'INSDInterval', u'INSDQualifier', u'INSDAltSeqData', u'INSDAltSeqItem', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< INSDSet >-----# INSDSet = SEQ_OF(name=u'INSDSet', mode=MODE_TYPE) _INSDSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDSeq'))) INSDSet._cont = _INSDSet__item_ #-----< INSDSeq >-----# INSDSeq = SEQ(name=u'INSDSeq', mode=MODE_TYPE) _INSDSeq_locus = STR_VIS(name=u'locus', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_length = INT(name=u'length', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDSeq_strandedness = STR_VIS(name=u'strandedness', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_moltype = STR_VIS(name=u'moltype', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDSeq_topology = STR_VIS(name=u'topology', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_division = STR_VIS(name=u'division', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_update_date = STR_VIS(name=u'update-date', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_create_date = STR_VIS(name=u'create-date', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_update_release = STR_VIS(name=u'update-release', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_create_release = STR_VIS(name=u'create-release', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_definition = STR_VIS(name=u'definition', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_primary_accession = STR_VIS(name=u'primary-accession', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_entry_version = STR_VIS(name=u'entry-version', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_accession_version = STR_VIS(name=u'accession-version', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_other_seqids = SEQ_OF(name=u'other-seqids', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_other_seqids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDSeqid'))) _INSDSeq_other_seqids._cont = __INSDSeq_other_seqids__item_ _INSDSeq_secondary_accessions = SEQ_OF(name=u'secondary-accessions', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_secondary_accessions__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDSecondary-accn'))) _INSDSeq_secondary_accessions._cont = __INSDSeq_secondary_accessions__item_ _INSDSeq_project = STR_VIS(name=u'project', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_keywords = SEQ_OF(name=u'keywords', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDKeyword'))) _INSDSeq_keywords._cont = __INSDSeq_keywords__item_ _INSDSeq_segment = STR_VIS(name=u'segment', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_organism = STR_VIS(name=u'organism', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_taxonomy = STR_VIS(name=u'taxonomy', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_references = SEQ_OF(name=u'references', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_references__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDReference'))) _INSDSeq_references._cont = __INSDSeq_references__item_ _INSDSeq_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_comment_set = SEQ_OF(name=u'comment-set', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_comment_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDComment'))) _INSDSeq_comment_set._cont = __INSDSeq_comment_set__item_ _INSDSeq_struc_comments = SEQ_OF(name=u'struc-comments', mode=MODE_TYPE, tag=(25, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_struc_comments__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDStrucComment'))) _INSDSeq_struc_comments._cont = __INSDSeq_struc_comments__item_ _INSDSeq_primary = STR_VIS(name=u'primary', mode=MODE_TYPE, tag=(26, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_source_db = STR_VIS(name=u'source-db', mode=MODE_TYPE, tag=(27, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_database_reference = STR_VIS(name=u'database-reference', mode=MODE_TYPE, tag=(28, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_feature_table = SEQ_OF(name=u'feature-table', mode=MODE_TYPE, tag=(29, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_feature_table__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDFeature'))) _INSDSeq_feature_table._cont = __INSDSeq_feature_table__item_ _INSDSeq_feature_set = SEQ_OF(name=u'feature-set', mode=MODE_TYPE, tag=(30, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_feature_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDFeatureSet'))) _INSDSeq_feature_set._cont = __INSDSeq_feature_set__item_ _INSDSeq_sequence = STR_VIS(name=u'sequence', mode=MODE_TYPE, tag=(31, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_contig = STR_VIS(name=u'contig', mode=MODE_TYPE, tag=(32, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDSeq_alt_seq = SEQ_OF(name=u'alt-seq', mode=MODE_TYPE, tag=(33, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_alt_seq__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDAltSeqData'))) _INSDSeq_alt_seq._cont = __INSDSeq_alt_seq__item_ _INSDSeq_xrefs = SEQ_OF(name=u'xrefs', mode=MODE_TYPE, tag=(34, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDSeq_xrefs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDXref'))) _INSDSeq_xrefs._cont = __INSDSeq_xrefs__item_ INSDSeq._cont = ASN1Dict([ (u'locus', _INSDSeq_locus), (u'length', _INSDSeq_length), (u'strandedness', _INSDSeq_strandedness), (u'moltype', _INSDSeq_moltype), (u'topology', _INSDSeq_topology), (u'division', _INSDSeq_division), (u'update-date', _INSDSeq_update_date), (u'create-date', _INSDSeq_create_date), (u'update-release', _INSDSeq_update_release), (u'create-release', _INSDSeq_create_release), (u'definition', _INSDSeq_definition), (u'primary-accession', _INSDSeq_primary_accession), (u'entry-version', _INSDSeq_entry_version), (u'accession-version', _INSDSeq_accession_version), (u'other-seqids', _INSDSeq_other_seqids), (u'secondary-accessions', _INSDSeq_secondary_accessions), (u'project', _INSDSeq_project), (u'keywords', _INSDSeq_keywords), (u'segment', _INSDSeq_segment), (u'source', _INSDSeq_source), (u'organism', _INSDSeq_organism), (u'taxonomy', _INSDSeq_taxonomy), (u'references', _INSDSeq_references), (u'comment', _INSDSeq_comment), (u'comment-set', _INSDSeq_comment_set), (u'struc-comments', _INSDSeq_struc_comments), (u'primary', _INSDSeq_primary), (u'source-db', _INSDSeq_source_db), (u'database-reference', _INSDSeq_database_reference), (u'feature-table', _INSDSeq_feature_table), (u'feature-set', _INSDSeq_feature_set), (u'sequence', _INSDSeq_sequence), (u'contig', _INSDSeq_contig), (u'alt-seq', _INSDSeq_alt_seq), (u'xrefs', _INSDSeq_xrefs), ]) INSDSeq._ext = None #-----< INSDSeqid >-----# INSDSeqid = STR_VIS(name=u'INSDSeqid', mode=MODE_TYPE) #-----< INSDSecondary-accn >-----# INSDSecondary_accn = STR_VIS(name=u'INSDSecondary-accn', mode=MODE_TYPE) #-----< INSDKeyword >-----# INSDKeyword = STR_VIS(name=u'INSDKeyword', mode=MODE_TYPE) #-----< INSDReference >-----# INSDReference = SEQ(name=u'INSDReference', mode=MODE_TYPE) _INSDReference_reference = STR_VIS(name=u'reference', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDReference_position = STR_VIS(name=u'position', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDReference_authors = SEQ_OF(name=u'authors', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDReference_authors__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDAuthor'))) _INSDReference_authors._cont = __INSDReference_authors__item_ _INSDReference_consortium = STR_VIS(name=u'consortium', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDReference_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDReference_journal = STR_VIS(name=u'journal', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDReference_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDReference_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDXref'))) _INSDReference_xref._cont = __INSDReference_xref__item_ _INSDReference_pubmed = INT(name=u'pubmed', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDReference_remark = STR_VIS(name=u'remark', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) INSDReference._cont = ASN1Dict([ (u'reference', _INSDReference_reference), (u'position', _INSDReference_position), (u'authors', _INSDReference_authors), (u'consortium', _INSDReference_consortium), (u'title', _INSDReference_title), (u'journal', _INSDReference_journal), (u'xref', _INSDReference_xref), (u'pubmed', _INSDReference_pubmed), (u'remark', _INSDReference_remark), ]) INSDReference._ext = None #-----< INSDAuthor >-----# INSDAuthor = STR_VIS(name=u'INSDAuthor', mode=MODE_TYPE) #-----< INSDXref >-----# INSDXref = SEQ(name=u'INSDXref', mode=MODE_TYPE) _INSDXref_dbname = STR_VIS(name=u'dbname', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDXref_id = STR_VIS(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) INSDXref._cont = ASN1Dict([ (u'dbname', _INSDXref_dbname), (u'id', _INSDXref_id), ]) INSDXref._ext = None #-----< INSDComment >-----# INSDComment = SEQ(name=u'INSDComment', mode=MODE_TYPE) _INSDComment_type = STR_VIS(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDComment_paragraphs = SEQ_OF(name=u'paragraphs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __INSDComment_paragraphs__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDCommentParagraph'))) _INSDComment_paragraphs._cont = __INSDComment_paragraphs__item_ INSDComment._cont = ASN1Dict([ (u'type', _INSDComment_type), (u'paragraphs', _INSDComment_paragraphs), ]) INSDComment._ext = None #-----< INSDCommentParagraph >-----# INSDCommentParagraph = STR_VIS(name=u'INSDCommentParagraph', mode=MODE_TYPE) #-----< INSDStrucComment >-----# INSDStrucComment = SEQ(name=u'INSDStrucComment', mode=MODE_TYPE) _INSDStrucComment_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDStrucComment_items = SEQ_OF(name=u'items', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __INSDStrucComment_items__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDStrucCommentItem'))) _INSDStrucComment_items._cont = __INSDStrucComment_items__item_ INSDStrucComment._cont = ASN1Dict([ (u'name', _INSDStrucComment_name), (u'items', _INSDStrucComment_items), ]) INSDStrucComment._ext = None #-----< INSDStrucCommentItem >-----# INSDStrucCommentItem = SEQ(name=u'INSDStrucCommentItem', mode=MODE_TYPE) _INSDStrucCommentItem_tag = STR_VIS(name=u'tag', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDStrucCommentItem_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDStrucCommentItem_url = STR_VIS(name=u'url', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) INSDStrucCommentItem._cont = ASN1Dict([ (u'tag', _INSDStrucCommentItem_tag), (u'value', _INSDStrucCommentItem_value), (u'url', _INSDStrucCommentItem_url), ]) INSDStrucCommentItem._ext = None #-----< INSDFeatureSet >-----# INSDFeatureSet = SEQ(name=u'INSDFeatureSet', mode=MODE_TYPE) _INSDFeatureSet_annot_source = STR_VIS(name=u'annot-source', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDFeatureSet_features = SEQ_OF(name=u'features', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __INSDFeatureSet_features__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDFeature'))) _INSDFeatureSet_features._cont = __INSDFeatureSet_features__item_ INSDFeatureSet._cont = ASN1Dict([ (u'annot-source', _INSDFeatureSet_annot_source), (u'features', _INSDFeatureSet_features), ]) INSDFeatureSet._ext = None #-----< INSDFeature >-----# INSDFeature = SEQ(name=u'INSDFeature', mode=MODE_TYPE) _INSDFeature_key = STR_VIS(name=u'key', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDFeature_location = STR_VIS(name=u'location', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDFeature_intervals = SEQ_OF(name=u'intervals', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDFeature_intervals__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDInterval'))) _INSDFeature_intervals._cont = __INSDFeature_intervals__item_ _INSDFeature_operator = STR_VIS(name=u'operator', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDFeature_partial5 = BOOL(name=u'partial5', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDFeature_partial3 = BOOL(name=u'partial3', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDFeature_quals = SEQ_OF(name=u'quals', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDFeature_quals__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDQualifier'))) _INSDFeature_quals._cont = __INSDFeature_quals__item_ _INSDFeature_xrefs = SEQ_OF(name=u'xrefs', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDFeature_xrefs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDXref'))) _INSDFeature_xrefs._cont = __INSDFeature_xrefs__item_ INSDFeature._cont = ASN1Dict([ (u'key', _INSDFeature_key), (u'location', _INSDFeature_location), (u'intervals', _INSDFeature_intervals), (u'operator', _INSDFeature_operator), (u'partial5', _INSDFeature_partial5), (u'partial3', _INSDFeature_partial3), (u'quals', _INSDFeature_quals), (u'xrefs', _INSDFeature_xrefs), ]) INSDFeature._ext = None #-----< INSDInterval >-----# INSDInterval = SEQ(name=u'INSDInterval', mode=MODE_TYPE) _INSDInterval_from_ = INT(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDInterval_to = INT(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDInterval_point = INT(name=u'point', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDInterval_iscomp = BOOL(name=u'iscomp', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDInterval_interbp = BOOL(name=u'interbp', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDInterval_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) INSDInterval._cont = ASN1Dict([ (u'from', _INSDInterval_from_), (u'to', _INSDInterval_to), (u'point', _INSDInterval_point), (u'iscomp', _INSDInterval_iscomp), (u'interbp', _INSDInterval_interbp), (u'accession', _INSDInterval_accession), ]) INSDInterval._ext = None #-----< INSDQualifier >-----# INSDQualifier = SEQ(name=u'INSDQualifier', mode=MODE_TYPE) _INSDQualifier_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDQualifier_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) INSDQualifier._cont = ASN1Dict([ (u'name', _INSDQualifier_name), (u'value', _INSDQualifier_value), ]) INSDQualifier._ext = None #-----< INSDAltSeqData >-----# INSDAltSeqData = SEQ(name=u'INSDAltSeqData', mode=MODE_TYPE) _INSDAltSeqData_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _INSDAltSeqData_items = SEQ_OF(name=u'items', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __INSDAltSeqData_items__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('INSD-INSDSeq', 'INSDAltSeqItem'))) _INSDAltSeqData_items._cont = __INSDAltSeqData_items__item_ INSDAltSeqData._cont = ASN1Dict([ (u'name', _INSDAltSeqData_name), (u'items', _INSDAltSeqData_items), ]) INSDAltSeqData._ext = None #-----< INSDAltSeqItem >-----# INSDAltSeqItem = SEQ(name=u'INSDAltSeqItem', mode=MODE_TYPE) _INSDAltSeqItem_interval = SEQ(name=u'interval', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('INSD-INSDSeq', 'INSDInterval')), opt=True) _INSDAltSeqItem_isgap = BOOL(name=u'isgap', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_gap_length = INT(name=u'gap-length', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_gap_type = STR_VIS(name=u'gap-type', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_gap_linkage = STR_VIS(name=u'gap-linkage', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_gap_comment = STR_VIS(name=u'gap-comment', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_first_accn = STR_VIS(name=u'first-accn', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_last_accn = STR_VIS(name=u'last-accn', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _INSDAltSeqItem_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) INSDAltSeqItem._cont = ASN1Dict([ (u'interval', _INSDAltSeqItem_interval), (u'isgap', _INSDAltSeqItem_isgap), (u'gap-length', _INSDAltSeqItem_gap_length), (u'gap-type', _INSDAltSeqItem_gap_type), (u'gap-linkage', _INSDAltSeqItem_gap_linkage), (u'gap-comment', _INSDAltSeqItem_gap_comment), (u'first-accn', _INSDAltSeqItem_first_accn), (u'last-accn', _INSDAltSeqItem_last_accn), (u'value', _INSDAltSeqItem_value), ]) INSDAltSeqItem._ext = None _all_ = [ _INSDSet__item_, INSDSet, _INSDSeq_locus, _INSDSeq_length, _INSDSeq_strandedness, _INSDSeq_moltype, _INSDSeq_topology, _INSDSeq_division, _INSDSeq_update_date, _INSDSeq_create_date, _INSDSeq_update_release, _INSDSeq_create_release, _INSDSeq_definition, _INSDSeq_primary_accession, _INSDSeq_entry_version, _INSDSeq_accession_version, __INSDSeq_other_seqids__item_, _INSDSeq_other_seqids, __INSDSeq_secondary_accessions__item_, _INSDSeq_secondary_accessions, _INSDSeq_project, __INSDSeq_keywords__item_, _INSDSeq_keywords, _INSDSeq_segment, _INSDSeq_source, _INSDSeq_organism, _INSDSeq_taxonomy, __INSDSeq_references__item_, _INSDSeq_references, _INSDSeq_comment, __INSDSeq_comment_set__item_, _INSDSeq_comment_set, __INSDSeq_struc_comments__item_, _INSDSeq_struc_comments, _INSDSeq_primary, _INSDSeq_source_db, _INSDSeq_database_reference, __INSDSeq_feature_table__item_, _INSDSeq_feature_table, __INSDSeq_feature_set__item_, _INSDSeq_feature_set, _INSDSeq_sequence, _INSDSeq_contig, __INSDSeq_alt_seq__item_, _INSDSeq_alt_seq, __INSDSeq_xrefs__item_, _INSDSeq_xrefs, INSDSeq, INSDSeqid, INSDSecondary_accn, INSDKeyword, _INSDReference_reference, _INSDReference_position, __INSDReference_authors__item_, _INSDReference_authors, _INSDReference_consortium, _INSDReference_title, _INSDReference_journal, __INSDReference_xref__item_, _INSDReference_xref, _INSDReference_pubmed, _INSDReference_remark, INSDReference, INSDAuthor, _INSDXref_dbname, _INSDXref_id, INSDXref, _INSDComment_type, __INSDComment_paragraphs__item_, _INSDComment_paragraphs, INSDComment, INSDCommentParagraph, _INSDStrucComment_name, __INSDStrucComment_items__item_, _INSDStrucComment_items, INSDStrucComment, _INSDStrucCommentItem_tag, _INSDStrucCommentItem_value, _INSDStrucCommentItem_url, INSDStrucCommentItem, _INSDFeatureSet_annot_source, __INSDFeatureSet_features__item_, _INSDFeatureSet_features, INSDFeatureSet, _INSDFeature_key, _INSDFeature_location, __INSDFeature_intervals__item_, _INSDFeature_intervals, _INSDFeature_operator, _INSDFeature_partial5, _INSDFeature_partial3, __INSDFeature_quals__item_, _INSDFeature_quals, __INSDFeature_xrefs__item_, _INSDFeature_xrefs, INSDFeature, _INSDInterval_from_, _INSDInterval_to, _INSDInterval_point, _INSDInterval_iscomp, _INSDInterval_interbp, _INSDInterval_accession, INSDInterval, _INSDQualifier_name, _INSDQualifier_value, INSDQualifier, _INSDAltSeqData_name, __INSDAltSeqData_items__item_, _INSDAltSeqData_items, INSDAltSeqData, _INSDAltSeqItem_interval, _INSDAltSeqItem_isgap, _INSDAltSeqItem_gap_length, _INSDAltSeqItem_gap_type, _INSDAltSeqItem_gap_linkage, _INSDAltSeqItem_gap_comment, _INSDAltSeqItem_first_accn, _INSDAltSeqItem_last_accn, _INSDAltSeqItem_value, INSDAltSeqItem, ] class NCBI_Medlars: _name_ = u'NCBI-Medlars' _oid_ = [] _obj_ = [ u'Medlars-entry', u'Medlars-record', ] _type_ = [ u'Medlars-entry', u'Medlars-record', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Medlars-entry >-----# Medlars_entry = SEQ(name=u'Medlars-entry', mode=MODE_TYPE) _Medlars_entry_pmid = INT(name=u'pmid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Medlars_entry_muid = INT(name=u'muid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Medlars_entry_recs = SET_OF(name=u'recs', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Medlars_entry_recs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medlars', 'Medlars-record'))) _Medlars_entry_recs._cont = __Medlars_entry_recs__item_ Medlars_entry._cont = ASN1Dict([ (u'pmid', _Medlars_entry_pmid), (u'muid', _Medlars_entry_muid), (u'recs', _Medlars_entry_recs), ]) Medlars_entry._ext = None #-----< Medlars-record >-----# Medlars_record = SEQ(name=u'Medlars-record', mode=MODE_TYPE) _Medlars_record_code = INT(name=u'code', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Medlars_record_abbr = STR_VIS(name=u'abbr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Medlars_record_data = STR_VIS(name=u'data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Medlars_record._cont = ASN1Dict([ (u'code', _Medlars_record_code), (u'abbr', _Medlars_record_abbr), (u'data', _Medlars_record_data), ]) Medlars_record._ext = None _all_ = [ _Medlars_entry_pmid, _Medlars_entry_muid, __Medlars_entry_recs__item_, _Medlars_entry_recs, Medlars_entry, _Medlars_record_code, _Medlars_record_abbr, _Medlars_record_data, Medlars_record, ] class NCBI_Medline: _name_ = u'NCBI-Medline' _oid_ = [] _obj_ = [ u'Medline-entry', u'Medline-mesh', u'Medline-qual', u'Medline-rn', u'Medline-si', u'Medline-field', u'DocRef', ] _type_ = [ u'Medline-entry', u'Medline-mesh', u'Medline-qual', u'Medline-rn', u'Medline-si', u'Medline-field', u'DocRef', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Medline-entry >-----# Medline_entry = SEQ(name=u'Medline-entry', mode=MODE_TYPE) _Medline_entry_uid = INT(name=u'uid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Medline_entry_em = CHOICE(name=u'em', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Medline_entry_cit = SEQ(name=u'cit', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-art'))) _Medline_entry_abstract = STR_VIS(name=u'abstract', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Medline_entry_mesh = SET_OF(name=u'mesh', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_mesh__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'Medline-mesh'))) _Medline_entry_mesh._cont = __Medline_entry_mesh__item_ _Medline_entry_substance = SET_OF(name=u'substance', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_substance__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'Medline-rn'))) _Medline_entry_substance._cont = __Medline_entry_substance__item_ _Medline_entry_xref = SET_OF(name=u'xref', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'Medline-si'))) _Medline_entry_xref._cont = __Medline_entry_xref__item_ _Medline_entry_idnum = SET_OF(name=u'idnum', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_idnum__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Medline_entry_idnum._cont = __Medline_entry_idnum__item_ _Medline_entry_gene = SET_OF(name=u'gene', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_gene__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Medline_entry_gene._cont = __Medline_entry_gene__item_ _Medline_entry_pmid = INT(name=u'pmid', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId')), opt=True) _Medline_entry_pub_type = SET_OF(name=u'pub-type', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_pub_type__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Medline_entry_pub_type._cont = __Medline_entry_pub_type__item_ _Medline_entry_mlfield = SET_OF(name=u'mlfield', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_entry_mlfield__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'Medline-field'))) _Medline_entry_mlfield._cont = __Medline_entry_mlfield__item_ _Medline_entry_status = INT(name=u'status', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=3) _Medline_entry_status._cont = ASN1Dict([(u'publisher', 1), (u'premedline', 2), (u'medline', 3)]) Medline_entry._cont = ASN1Dict([ (u'uid', _Medline_entry_uid), (u'em', _Medline_entry_em), (u'cit', _Medline_entry_cit), (u'abstract', _Medline_entry_abstract), (u'mesh', _Medline_entry_mesh), (u'substance', _Medline_entry_substance), (u'xref', _Medline_entry_xref), (u'idnum', _Medline_entry_idnum), (u'gene', _Medline_entry_gene), (u'pmid', _Medline_entry_pmid), (u'pub-type', _Medline_entry_pub_type), (u'mlfield', _Medline_entry_mlfield), (u'status', _Medline_entry_status), ]) Medline_entry._ext = None #-----< Medline-mesh >-----# Medline_mesh = SEQ(name=u'Medline-mesh', mode=MODE_TYPE) _Medline_mesh_mp = BOOL(name=u'mp', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Medline_mesh_term = STR_VIS(name=u'term', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Medline_mesh_qual = SET_OF(name=u'qual', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_mesh_qual__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'Medline-qual'))) _Medline_mesh_qual._cont = __Medline_mesh_qual__item_ Medline_mesh._cont = ASN1Dict([ (u'mp', _Medline_mesh_mp), (u'term', _Medline_mesh_term), (u'qual', _Medline_mesh_qual), ]) Medline_mesh._ext = None #-----< Medline-qual >-----# Medline_qual = SEQ(name=u'Medline-qual', mode=MODE_TYPE) _Medline_qual_mp = BOOL(name=u'mp', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Medline_qual_subh = STR_VIS(name=u'subh', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Medline_qual._cont = ASN1Dict([ (u'mp', _Medline_qual_mp), (u'subh', _Medline_qual_subh), ]) Medline_qual._ext = None #-----< Medline-rn >-----# Medline_rn = SEQ(name=u'Medline-rn', mode=MODE_TYPE) _Medline_rn_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Medline_rn_type._cont = ASN1Dict([(u'nameonly', 0), (u'cas', 1), (u'ec', 2)]) _Medline_rn_type._ext = None _Medline_rn_cit = STR_VIS(name=u'cit', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Medline_rn_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Medline_rn._cont = ASN1Dict([ (u'type', _Medline_rn_type), (u'cit', _Medline_rn_cit), (u'name', _Medline_rn_name), ]) Medline_rn._ext = None #-----< Medline-si >-----# Medline_si = SEQ(name=u'Medline-si', mode=MODE_TYPE) _Medline_si_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Medline_si_type._cont = ASN1Dict([(u'ddbj', 1), (u'carbbank', 2), (u'embl', 3), (u'hdb', 4), (u'genbank', 5), (u'hgml', 6), (u'mim', 7), (u'msd', 8), (u'pdb', 9), (u'pir', 10), (u'prfseqdb', 11), (u'psd', 12), (u'swissprot', 13), (u'gdb', 14)]) _Medline_si_type._ext = None _Medline_si_cit = STR_VIS(name=u'cit', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Medline_si._cont = ASN1Dict([ (u'type', _Medline_si_type), (u'cit', _Medline_si_cit), ]) Medline_si._ext = None #-----< Medline-field >-----# Medline_field = SEQ(name=u'Medline-field', mode=MODE_TYPE) _Medline_field_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Medline_field_type._cont = ASN1Dict([(u'other', 0), (u'comment', 1), (u'erratum', 2)]) _Medline_field_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Medline_field_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Medline_field_ids__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'DocRef'))) _Medline_field_ids._cont = __Medline_field_ids__item_ Medline_field._cont = ASN1Dict([ (u'type', _Medline_field_type), (u'str', _Medline_field_str), (u'ids', _Medline_field_ids), ]) Medline_field._ext = None #-----< DocRef >-----# DocRef = SEQ(name=u'DocRef', mode=MODE_TYPE) _DocRef_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _DocRef_type._cont = ASN1Dict([(u'medline', 1), (u'pubmed', 2), (u'ncbigi', 3)]) _DocRef_uid = INT(name=u'uid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) DocRef._cont = ASN1Dict([ (u'type', _DocRef_type), (u'uid', _DocRef_uid), ]) DocRef._ext = None _all_ = [ _Medline_entry_uid, _Medline_entry_em, _Medline_entry_cit, _Medline_entry_abstract, __Medline_entry_mesh__item_, _Medline_entry_mesh, __Medline_entry_substance__item_, _Medline_entry_substance, __Medline_entry_xref__item_, _Medline_entry_xref, __Medline_entry_idnum__item_, _Medline_entry_idnum, __Medline_entry_gene__item_, _Medline_entry_gene, _Medline_entry_pmid, __Medline_entry_pub_type__item_, _Medline_entry_pub_type, __Medline_entry_mlfield__item_, _Medline_entry_mlfield, _Medline_entry_status, Medline_entry, _Medline_mesh_mp, _Medline_mesh_term, __Medline_mesh_qual__item_, _Medline_mesh_qual, Medline_mesh, _Medline_qual_mp, _Medline_qual_subh, Medline_qual, _Medline_rn_type, _Medline_rn_cit, _Medline_rn_name, Medline_rn, _Medline_si_type, _Medline_si_cit, Medline_si, _Medline_field_type, _Medline_field_str, __Medline_field_ids__item_, _Medline_field_ids, Medline_field, _DocRef_type, _DocRef_uid, DocRef, ] class NCBI_Mim: _name_ = u'NCBI-Mim' _oid_ = [] _obj_ = [ u'Mim-entries', u'Mim-set', u'Mim-entry', u'Mim-text', u'Mim-allelic-variant', u'Mim-link', u'Mim-author', u'Mim-cit', u'Mim-reference', u'Mim-index-term', u'Mim-edit-item', u'Mim-date', u'Mim-page', ] _type_ = [ u'Mim-entries', u'Mim-set', u'Mim-entry', u'Mim-text', u'Mim-allelic-variant', u'Mim-link', u'Mim-author', u'Mim-cit', u'Mim-reference', u'Mim-index-term', u'Mim-edit-item', u'Mim-date', u'Mim-page', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Mim-entries >-----# Mim_entries = SEQ_OF(name=u'Mim-entries', mode=MODE_TYPE) _Mim_entries__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-entry'))) Mim_entries._cont = _Mim_entries__item_ #-----< Mim-set >-----# Mim_set = SEQ(name=u'Mim-set', mode=MODE_TYPE) _Mim_set_releaseDate = SEQ(name=u'releaseDate', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-date'))) _Mim_set_mimEntries = SEQ_OF(name=u'mimEntries', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Mim_set_mimEntries__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-entry'))) _Mim_set_mimEntries._cont = __Mim_set_mimEntries__item_ Mim_set._cont = ASN1Dict([ (u'releaseDate', _Mim_set_releaseDate), (u'mimEntries', _Mim_set_mimEntries), ]) Mim_set._ext = None #-----< Mim-entry >-----# Mim_entry = SEQ(name=u'Mim-entry', mode=MODE_TYPE) _Mim_entry_mimNumber = STR_VIS(name=u'mimNumber', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_entry_mimType = INT(name=u'mimType', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_entry_mimType._cont = ASN1Dict([(u'none', 0), (u'star', 1), (u'caret', 2), (u'pound', 3), (u'plus', 4), (u'perc', 5)]) _Mim_entry_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_entry_copyright = STR_VIS(name=u'copyright', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_entry_symbol = STR_VIS(name=u'symbol', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_entry_locus = STR_VIS(name=u'locus', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_entry_synonyms = SEQ_OF(name=u'synonyms', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_synonyms__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Mim_entry_synonyms._cont = __Mim_entry_synonyms__item_ _Mim_entry_aliases = SEQ_OF(name=u'aliases', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_aliases__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Mim_entry_aliases._cont = __Mim_entry_aliases__item_ _Mim_entry_included = SEQ_OF(name=u'included', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_included__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Mim_entry_included._cont = __Mim_entry_included__item_ _Mim_entry_seeAlso = SEQ_OF(name=u'seeAlso', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_seeAlso__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-cit'))) _Mim_entry_seeAlso._cont = __Mim_entry_seeAlso__item_ _Mim_entry_text = SEQ_OF(name=u'text', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_text__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-text'))) _Mim_entry_text._cont = __Mim_entry_text__item_ _Mim_entry_textfields = SEQ_OF(name=u'textfields', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_textfields__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-text'))) _Mim_entry_textfields._cont = __Mim_entry_textfields__item_ _Mim_entry_hasSummary = BOOL(name=u'hasSummary', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_entry_summary = SEQ_OF(name=u'summary', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_summary__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-text'))) _Mim_entry_summary._cont = __Mim_entry_summary__item_ _Mim_entry_summaryAttribution = SEQ_OF(name=u'summaryAttribution', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_summaryAttribution__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item'))) _Mim_entry_summaryAttribution._cont = __Mim_entry_summaryAttribution__item_ _Mim_entry_summaryEditHistory = SEQ_OF(name=u'summaryEditHistory', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_summaryEditHistory__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item'))) _Mim_entry_summaryEditHistory._cont = __Mim_entry_summaryEditHistory__item_ _Mim_entry_summaryCreationDate = SEQ(name=u'summaryCreationDate', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item')), opt=True) _Mim_entry_allelicVariants = SEQ_OF(name=u'allelicVariants', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_allelicVariants__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-allelic-variant'))) _Mim_entry_allelicVariants._cont = __Mim_entry_allelicVariants__item_ _Mim_entry_hasSynopsis = BOOL(name=u'hasSynopsis', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_entry_clinicalSynopsis = SEQ_OF(name=u'clinicalSynopsis', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_clinicalSynopsis__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-index-term'))) _Mim_entry_clinicalSynopsis._cont = __Mim_entry_clinicalSynopsis__item_ _Mim_entry_synopsisAttribution = SEQ_OF(name=u'synopsisAttribution', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_synopsisAttribution__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item'))) _Mim_entry_synopsisAttribution._cont = __Mim_entry_synopsisAttribution__item_ _Mim_entry_synopsisEditHistory = SEQ_OF(name=u'synopsisEditHistory', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_synopsisEditHistory__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item'))) _Mim_entry_synopsisEditHistory._cont = __Mim_entry_synopsisEditHistory__item_ _Mim_entry_synopsisCreationDate = SEQ(name=u'synopsisCreationDate', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item')), opt=True) _Mim_entry_editHistory = SEQ_OF(name=u'editHistory', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_editHistory__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item'))) _Mim_entry_editHistory._cont = __Mim_entry_editHistory__item_ _Mim_entry_creationDate = SEQ(name=u'creationDate', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item')), opt=True) _Mim_entry_references = SEQ_OF(name=u'references', mode=MODE_TYPE, tag=(25, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_references__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-reference'))) _Mim_entry_references._cont = __Mim_entry_references__item_ _Mim_entry_attribution = SEQ_OF(name=u'attribution', mode=MODE_TYPE, tag=(26, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_entry_attribution__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-edit-item'))) _Mim_entry_attribution._cont = __Mim_entry_attribution__item_ _Mim_entry_numGeneMaps = INT(name=u'numGeneMaps', mode=MODE_TYPE, tag=(27, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_entry_medlineLinks = SEQ(name=u'medlineLinks', mode=MODE_TYPE, tag=(28, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) _Mim_entry_proteinLinks = SEQ(name=u'proteinLinks', mode=MODE_TYPE, tag=(29, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) _Mim_entry_nucleotideLinks = SEQ(name=u'nucleotideLinks', mode=MODE_TYPE, tag=(30, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) _Mim_entry_structureLinks = SEQ(name=u'structureLinks', mode=MODE_TYPE, tag=(31, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) _Mim_entry_genomeLinks = SEQ(name=u'genomeLinks', mode=MODE_TYPE, tag=(32, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) Mim_entry._cont = ASN1Dict([ (u'mimNumber', _Mim_entry_mimNumber), (u'mimType', _Mim_entry_mimType), (u'title', _Mim_entry_title), (u'copyright', _Mim_entry_copyright), (u'symbol', _Mim_entry_symbol), (u'locus', _Mim_entry_locus), (u'synonyms', _Mim_entry_synonyms), (u'aliases', _Mim_entry_aliases), (u'included', _Mim_entry_included), (u'seeAlso', _Mim_entry_seeAlso), (u'text', _Mim_entry_text), (u'textfields', _Mim_entry_textfields), (u'hasSummary', _Mim_entry_hasSummary), (u'summary', _Mim_entry_summary), (u'summaryAttribution', _Mim_entry_summaryAttribution), (u'summaryEditHistory', _Mim_entry_summaryEditHistory), (u'summaryCreationDate', _Mim_entry_summaryCreationDate), (u'allelicVariants', _Mim_entry_allelicVariants), (u'hasSynopsis', _Mim_entry_hasSynopsis), (u'clinicalSynopsis', _Mim_entry_clinicalSynopsis), (u'synopsisAttribution', _Mim_entry_synopsisAttribution), (u'synopsisEditHistory', _Mim_entry_synopsisEditHistory), (u'synopsisCreationDate', _Mim_entry_synopsisCreationDate), (u'editHistory', _Mim_entry_editHistory), (u'creationDate', _Mim_entry_creationDate), (u'references', _Mim_entry_references), (u'attribution', _Mim_entry_attribution), (u'numGeneMaps', _Mim_entry_numGeneMaps), (u'medlineLinks', _Mim_entry_medlineLinks), (u'proteinLinks', _Mim_entry_proteinLinks), (u'nucleotideLinks', _Mim_entry_nucleotideLinks), (u'structureLinks', _Mim_entry_structureLinks), (u'genomeLinks', _Mim_entry_genomeLinks), ]) Mim_entry._ext = None #-----< Mim-text >-----# Mim_text = SEQ(name=u'Mim-text', mode=MODE_TYPE) _Mim_text_label = STR_VIS(name=u'label', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_text_text = STR_VIS(name=u'text', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_text_neighbors = SEQ(name=u'neighbors', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) Mim_text._cont = ASN1Dict([ (u'label', _Mim_text_label), (u'text', _Mim_text_text), (u'neighbors', _Mim_text_neighbors), ]) Mim_text._ext = None #-----< Mim-allelic-variant >-----# Mim_allelic_variant = SEQ(name=u'Mim-allelic-variant', mode=MODE_TYPE) _Mim_allelic_variant_number = STR_VIS(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_allelic_variant_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_allelic_variant_aliases = SEQ_OF(name=u'aliases', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_allelic_variant_aliases__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Mim_allelic_variant_aliases._cont = __Mim_allelic_variant_aliases__item_ _Mim_allelic_variant_mutation = SEQ_OF(name=u'mutation', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_allelic_variant_mutation__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-text'))) _Mim_allelic_variant_mutation._cont = __Mim_allelic_variant_mutation__item_ _Mim_allelic_variant_description = SEQ_OF(name=u'description', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_allelic_variant_description__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-text'))) _Mim_allelic_variant_description._cont = __Mim_allelic_variant_description__item_ _Mim_allelic_variant_snpLinks = SEQ(name=u'snpLinks', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-link')), opt=True) Mim_allelic_variant._cont = ASN1Dict([ (u'number', _Mim_allelic_variant_number), (u'name', _Mim_allelic_variant_name), (u'aliases', _Mim_allelic_variant_aliases), (u'mutation', _Mim_allelic_variant_mutation), (u'description', _Mim_allelic_variant_description), (u'snpLinks', _Mim_allelic_variant_snpLinks), ]) Mim_allelic_variant._ext = None #-----< Mim-link >-----# Mim_link = SEQ(name=u'Mim-link', mode=MODE_TYPE) _Mim_link_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_link_uids = STR_VIS(name=u'uids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_link_numRelevant = INT(name=u'numRelevant', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Mim_link._cont = ASN1Dict([ (u'num', _Mim_link_num), (u'uids', _Mim_link_uids), (u'numRelevant', _Mim_link_numRelevant), ]) Mim_link._ext = None #-----< Mim-author >-----# Mim_author = SEQ(name=u'Mim-author', mode=MODE_TYPE) _Mim_author_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_author_index = INT(name=u'index', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Mim_author._cont = ASN1Dict([ (u'name', _Mim_author_name), (u'index', _Mim_author_index), ]) Mim_author._ext = None #-----< Mim-cit >-----# Mim_cit = SEQ(name=u'Mim-cit', mode=MODE_TYPE) _Mim_cit_number = INT(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_cit_author = STR_VIS(name=u'author', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_cit_others = STR_VIS(name=u'others', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_cit_year = INT(name=u'year', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Mim_cit._cont = ASN1Dict([ (u'number', _Mim_cit_number), (u'author', _Mim_cit_author), (u'others', _Mim_cit_others), (u'year', _Mim_cit_year), ]) Mim_cit._ext = None #-----< Mim-reference >-----# Mim_reference = SEQ(name=u'Mim-reference', mode=MODE_TYPE) _Mim_reference_number = INT(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_reference_origNumber = INT(name=u'origNumber', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_type._cont = ASN1Dict([(u'not-set', 0), (u'citation', 1), (u'book', 2), (u'personal-communication', 3), (u'book-citation', 4)]) _Mim_reference_type._ext = None _Mim_reference_authors = SEQ_OF(name=u'authors', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Mim_reference_authors__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-author'))) _Mim_reference_authors._cont = __Mim_reference_authors__item_ _Mim_reference_primaryAuthor = STR_VIS(name=u'primaryAuthor', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_reference_otherAuthors = STR_VIS(name=u'otherAuthors', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_reference_citationTitle = STR_VIS(name=u'citationTitle', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_reference_citationType = INT(name=u'citationType', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_bookTitle = STR_VIS(name=u'bookTitle', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_editors = SEQ_OF(name=u'editors', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_reference_editors__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-author'))) _Mim_reference_editors._cont = __Mim_reference_editors__item_ _Mim_reference_volume = STR_VIS(name=u'volume', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_edition = STR_VIS(name=u'edition', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_journal = STR_VIS(name=u'journal', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_series = STR_VIS(name=u'series', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_publisher = STR_VIS(name=u'publisher', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_place = STR_VIS(name=u'place', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_commNote = STR_VIS(name=u'commNote', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_pubDate = SEQ(name=u'pubDate', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-date'))) _Mim_reference_pages = SEQ_OF(name=u'pages', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Mim_reference_pages__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Mim', 'Mim-page'))) _Mim_reference_pages._cont = __Mim_reference_pages__item_ _Mim_reference_miscInfo = STR_VIS(name=u'miscInfo', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_pubmedUID = INT(name=u'pubmedUID', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_reference_ambiguous = BOOL(name=u'ambiguous', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_reference_noLink = BOOL(name=u'noLink', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Mim_reference._cont = ASN1Dict([ (u'number', _Mim_reference_number), (u'origNumber', _Mim_reference_origNumber), (u'type', _Mim_reference_type), (u'authors', _Mim_reference_authors), (u'primaryAuthor', _Mim_reference_primaryAuthor), (u'otherAuthors', _Mim_reference_otherAuthors), (u'citationTitle', _Mim_reference_citationTitle), (u'citationType', _Mim_reference_citationType), (u'bookTitle', _Mim_reference_bookTitle), (u'editors', _Mim_reference_editors), (u'volume', _Mim_reference_volume), (u'edition', _Mim_reference_edition), (u'journal', _Mim_reference_journal), (u'series', _Mim_reference_series), (u'publisher', _Mim_reference_publisher), (u'place', _Mim_reference_place), (u'commNote', _Mim_reference_commNote), (u'pubDate', _Mim_reference_pubDate), (u'pages', _Mim_reference_pages), (u'miscInfo', _Mim_reference_miscInfo), (u'pubmedUID', _Mim_reference_pubmedUID), (u'ambiguous', _Mim_reference_ambiguous), (u'noLink', _Mim_reference_noLink), ]) Mim_reference._ext = None #-----< Mim-index-term >-----# Mim_index_term = SEQ(name=u'Mim-index-term', mode=MODE_TYPE) _Mim_index_term_key = STR_VIS(name=u'key', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_index_term_terms = SEQ_OF(name=u'terms', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Mim_index_term_terms__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Mim_index_term_terms._cont = __Mim_index_term_terms__item_ Mim_index_term._cont = ASN1Dict([ (u'key', _Mim_index_term_key), (u'terms', _Mim_index_term_terms), ]) Mim_index_term._ext = None #-----< Mim-edit-item >-----# Mim_edit_item = SEQ(name=u'Mim-edit-item', mode=MODE_TYPE) _Mim_edit_item_author = STR_VIS(name=u'author', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_edit_item_modDate = SEQ(name=u'modDate', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mim', 'Mim-date'))) Mim_edit_item._cont = ASN1Dict([ (u'author', _Mim_edit_item_author), (u'modDate', _Mim_edit_item_modDate), ]) Mim_edit_item._ext = None #-----< Mim-date >-----# Mim_date = SEQ(name=u'Mim-date', mode=MODE_TYPE) _Mim_date_year = INT(name=u'year', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_date_month = INT(name=u'month', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Mim_date_day = INT(name=u'day', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Mim_date._cont = ASN1Dict([ (u'year', _Mim_date_year), (u'month', _Mim_date_month), (u'day', _Mim_date_day), ]) Mim_date._ext = None #-----< Mim-page >-----# Mim_page = SEQ(name=u'Mim-page', mode=MODE_TYPE) _Mim_page_from_ = STR_VIS(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mim_page_to = STR_VIS(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Mim_page._cont = ASN1Dict([ (u'from', _Mim_page_from_), (u'to', _Mim_page_to), ]) Mim_page._ext = None _all_ = [ _Mim_entries__item_, Mim_entries, _Mim_set_releaseDate, __Mim_set_mimEntries__item_, _Mim_set_mimEntries, Mim_set, _Mim_entry_mimNumber, _Mim_entry_mimType, _Mim_entry_title, _Mim_entry_copyright, _Mim_entry_symbol, _Mim_entry_locus, __Mim_entry_synonyms__item_, _Mim_entry_synonyms, __Mim_entry_aliases__item_, _Mim_entry_aliases, __Mim_entry_included__item_, _Mim_entry_included, __Mim_entry_seeAlso__item_, _Mim_entry_seeAlso, __Mim_entry_text__item_, _Mim_entry_text, __Mim_entry_textfields__item_, _Mim_entry_textfields, _Mim_entry_hasSummary, __Mim_entry_summary__item_, _Mim_entry_summary, __Mim_entry_summaryAttribution__item_, _Mim_entry_summaryAttribution, __Mim_entry_summaryEditHistory__item_, _Mim_entry_summaryEditHistory, _Mim_entry_summaryCreationDate, __Mim_entry_allelicVariants__item_, _Mim_entry_allelicVariants, _Mim_entry_hasSynopsis, __Mim_entry_clinicalSynopsis__item_, _Mim_entry_clinicalSynopsis, __Mim_entry_synopsisAttribution__item_, _Mim_entry_synopsisAttribution, __Mim_entry_synopsisEditHistory__item_, _Mim_entry_synopsisEditHistory, _Mim_entry_synopsisCreationDate, __Mim_entry_editHistory__item_, _Mim_entry_editHistory, _Mim_entry_creationDate, __Mim_entry_references__item_, _Mim_entry_references, __Mim_entry_attribution__item_, _Mim_entry_attribution, _Mim_entry_numGeneMaps, _Mim_entry_medlineLinks, _Mim_entry_proteinLinks, _Mim_entry_nucleotideLinks, _Mim_entry_structureLinks, _Mim_entry_genomeLinks, Mim_entry, _Mim_text_label, _Mim_text_text, _Mim_text_neighbors, Mim_text, _Mim_allelic_variant_number, _Mim_allelic_variant_name, __Mim_allelic_variant_aliases__item_, _Mim_allelic_variant_aliases, __Mim_allelic_variant_mutation__item_, _Mim_allelic_variant_mutation, __Mim_allelic_variant_description__item_, _Mim_allelic_variant_description, _Mim_allelic_variant_snpLinks, Mim_allelic_variant, _Mim_link_num, _Mim_link_uids, _Mim_link_numRelevant, Mim_link, _Mim_author_name, _Mim_author_index, Mim_author, _Mim_cit_number, _Mim_cit_author, _Mim_cit_others, _Mim_cit_year, Mim_cit, _Mim_reference_number, _Mim_reference_origNumber, _Mim_reference_type, __Mim_reference_authors__item_, _Mim_reference_authors, _Mim_reference_primaryAuthor, _Mim_reference_otherAuthors, _Mim_reference_citationTitle, _Mim_reference_citationType, _Mim_reference_bookTitle, __Mim_reference_editors__item_, _Mim_reference_editors, _Mim_reference_volume, _Mim_reference_edition, _Mim_reference_journal, _Mim_reference_series, _Mim_reference_publisher, _Mim_reference_place, _Mim_reference_commNote, _Mim_reference_pubDate, __Mim_reference_pages__item_, _Mim_reference_pages, _Mim_reference_miscInfo, _Mim_reference_pubmedUID, _Mim_reference_ambiguous, _Mim_reference_noLink, Mim_reference, _Mim_index_term_key, __Mim_index_term_terms__item_, _Mim_index_term_terms, Mim_index_term, _Mim_edit_item_author, _Mim_edit_item_modDate, Mim_edit_item, _Mim_date_year, _Mim_date_month, _Mim_date_day, Mim_date, _Mim_page_from_, _Mim_page_to, Mim_page, ] class NCBI_MedArchive: _name_ = u'NCBI-MedArchive' _oid_ = [] _obj_ = [ u'Mla-request', u'Title-type', u'Title-msg', u'Title-msg-list', u'Error-val', u'Mla-back', ] _type_ = [ u'Mla-request', u'Title-type', u'Title-msg', u'Title-msg-list', u'Error-val', u'Mla-back', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Mla-request >-----# Mla_request = CHOICE(name=u'Mla-request', mode=MODE_TYPE) _Mla_request_init = NULL(name=u'init', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_getmle = INT(name=u'getmle', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_getpub = INT(name=u'getpub', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_gettitle = SEQ(name=u'gettitle', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-MedArchive', 'Title-msg'))) _Mla_request_citmatch = CHOICE(name=u'citmatch', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Mla_request_fini = NULL(name=u'fini', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_getmriuids = INT(name=u'getmriuids', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_getaccuids = SEQ(name=u'getaccuids', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medline', 'Medline-si'))) _Mla_request_uidtopmid = INT(name=u'uidtopmid', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_pmidtouid = INT(name=u'pmidtouid', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Mla_request_getmlepmid = INT(name=u'getmlepmid', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Mla_request_getpubpmid = INT(name=u'getpubpmid', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Mla_request_citmatchpmid = CHOICE(name=u'citmatchpmid', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Mla_request_getmripmids = INT(name=u'getmripmids', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_getaccpmids = SEQ(name=u'getaccpmids', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medline', 'Medline-si'))) _Mla_request_citlstpmids = CHOICE(name=u'citlstpmids', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Mla_request_getmleuid = INT(name=u'getmleuid', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_request_getmlrpmid = INT(name=u'getmlrpmid', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Mla_request_getmlruid = INT(name=u'getmlruid', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Mla_request._cont = ASN1Dict([ (u'init', _Mla_request_init), (u'getmle', _Mla_request_getmle), (u'getpub', _Mla_request_getpub), (u'gettitle', _Mla_request_gettitle), (u'citmatch', _Mla_request_citmatch), (u'fini', _Mla_request_fini), (u'getmriuids', _Mla_request_getmriuids), (u'getaccuids', _Mla_request_getaccuids), (u'uidtopmid', _Mla_request_uidtopmid), (u'pmidtouid', _Mla_request_pmidtouid), (u'getmlepmid', _Mla_request_getmlepmid), (u'getpubpmid', _Mla_request_getpubpmid), (u'citmatchpmid', _Mla_request_citmatchpmid), (u'getmripmids', _Mla_request_getmripmids), (u'getaccpmids', _Mla_request_getaccpmids), (u'citlstpmids', _Mla_request_citlstpmids), (u'getmleuid', _Mla_request_getmleuid), (u'getmlrpmid', _Mla_request_getmlrpmid), (u'getmlruid', _Mla_request_getmlruid), ]) Mla_request._ext = None #-----< Title-type >-----# Title_type = ENUM(name=u'Title-type', mode=MODE_TYPE) Title_type._cont = ASN1Dict([(u'not-set', 0), (u'name', 1), (u'tsub', 2), (u'trans', 3), (u'jta', 4), (u'iso-jta', 5), (u'ml-jta', 6), (u'coden', 7), (u'issn', 8), (u'abr', 9), (u'isbn', 10), (u'all', 255)]) Title_type._ext = None #-----< Title-msg >-----# Title_msg = SEQ(name=u'Title-msg', mode=MODE_TYPE) _Title_msg_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-MedArchive', 'Title-type'))) _Title_msg_title = SET_OF(name=u'title', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Title'))) Title_msg._cont = ASN1Dict([ (u'type', _Title_msg_type), (u'title', _Title_msg_title), ]) Title_msg._ext = None #-----< Title-msg-list >-----# Title_msg_list = SEQ(name=u'Title-msg-list', mode=MODE_TYPE) _Title_msg_list_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Title_msg_list_titles = SEQ_OF(name=u'titles', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Title_msg_list_titles__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-MedArchive', 'Title-msg'))) _Title_msg_list_titles._cont = __Title_msg_list_titles__item_ Title_msg_list._cont = ASN1Dict([ (u'num', _Title_msg_list_num), (u'titles', _Title_msg_list_titles), ]) Title_msg_list._ext = None #-----< Error-val >-----# Error_val = ENUM(name=u'Error-val', mode=MODE_TYPE) Error_val._cont = ASN1Dict([(u'not-found', 0), (u'operational-error', 1), (u'cannot-connect-jrsrv', 2), (u'cannot-connect-pmdb', 3), (u'journal-not-found', 4), (u'citation-not-found', 5), (u'citation-ambiguous', 6), (u'citation-too-many', 7), (u'cannot-connect-searchbackend-jrsrv', 8), (u'cannot-connect-searchbackend-pmdb', 9), (u'cannot-connect-docsumbackend', 10)]) Error_val._ext = None #-----< Mla-back >-----# Mla_back = CHOICE(name=u'Mla-back', mode=MODE_TYPE) _Mla_back_init = NULL(name=u'init', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_back_error = ENUM(name=u'error', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-MedArchive', 'Error-val'))) _Mla_back_getmle = SEQ(name=u'getmle', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medline', 'Medline-entry'))) _Mla_back_getpub = CHOICE(name=u'getpub', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Mla_back_gettitle = SEQ(name=u'gettitle', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-MedArchive', 'Title-msg-list'))) _Mla_back_citmatch = INT(name=u'citmatch', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_back_fini = NULL(name=u'fini', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_back_getuids = SEQ_OF(name=u'getuids', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Mla_back_getuids__item_ = INT(name='_item_', mode=MODE_TYPE) _Mla_back_getuids._cont = __Mla_back_getuids__item_ _Mla_back_getpmids = SEQ_OF(name=u'getpmids', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Mla_back_getpmids__item_ = INT(name='_item_', mode=MODE_TYPE) _Mla_back_getpmids._cont = __Mla_back_getpmids__item_ _Mla_back_outuid = INT(name=u'outuid', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Mla_back_outpmid = INT(name=u'outpmid', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Mla_back_getpme = SEQ(name=u'getpme', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PubMed', 'Pubmed-entry'))) _Mla_back_getmlr = SEQ(name=u'getmlr', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medlars', 'Medlars-entry'))) Mla_back._cont = ASN1Dict([ (u'init', _Mla_back_init), (u'error', _Mla_back_error), (u'getmle', _Mla_back_getmle), (u'getpub', _Mla_back_getpub), (u'gettitle', _Mla_back_gettitle), (u'citmatch', _Mla_back_citmatch), (u'fini', _Mla_back_fini), (u'getuids', _Mla_back_getuids), (u'getpmids', _Mla_back_getpmids), (u'outuid', _Mla_back_outuid), (u'outpmid', _Mla_back_outpmid), (u'getpme', _Mla_back_getpme), (u'getmlr', _Mla_back_getmlr), ]) Mla_back._ext = None _all_ = [ _Mla_request_init, _Mla_request_getmle, _Mla_request_getpub, _Mla_request_gettitle, _Mla_request_citmatch, _Mla_request_fini, _Mla_request_getmriuids, _Mla_request_getaccuids, _Mla_request_uidtopmid, _Mla_request_pmidtouid, _Mla_request_getmlepmid, _Mla_request_getpubpmid, _Mla_request_citmatchpmid, _Mla_request_getmripmids, _Mla_request_getaccpmids, _Mla_request_citlstpmids, _Mla_request_getmleuid, _Mla_request_getmlrpmid, _Mla_request_getmlruid, Mla_request, Title_type, _Title_msg_type, _Title_msg_title, Title_msg, _Title_msg_list_num, __Title_msg_list_titles__item_, _Title_msg_list_titles, Title_msg_list, Error_val, _Mla_back_init, _Mla_back_error, _Mla_back_getmle, _Mla_back_getpub, _Mla_back_gettitle, _Mla_back_citmatch, _Mla_back_fini, __Mla_back_getuids__item_, _Mla_back_getuids, __Mla_back_getpmids__item_, _Mla_back_getpmids, _Mla_back_outuid, _Mla_back_outpmid, _Mla_back_getpme, _Mla_back_getmlr, Mla_back, ] class MMDB: _name_ = u'MMDB' _oid_ = [] _obj_ = [ u'Biostruc', u'Biostruc-id', u'Mmdb-id', u'Biostruc-descr', u'Biostruc-history', u'Biostruc-replace', u'Biostruc-source', u'Biostruc-set', u'Biostruc-annot-set', u'Biostruc-residue-graph-set', ] _type_ = [ u'Biostruc', u'Biostruc-id', u'Mmdb-id', u'Biostruc-descr', u'Biostruc-history', u'Biostruc-replace', u'Biostruc-source', u'Biostruc-set', u'Biostruc-annot-set', u'Biostruc-residue-graph-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Biostruc >-----# Biostruc = SEQ(name=u'Biostruc', mode=MODE_TYPE) _Biostruc_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_id._cont = __Biostruc_id__item_ _Biostruc_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-descr'))) _Biostruc_descr._cont = __Biostruc_descr__item_ _Biostruc_chemical_graph = SEQ(name=u'chemical-graph', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biostruc-graph'))) _Biostruc_features = SEQ_OF(name=u'features', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_features__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-set'))) _Biostruc_features._cont = __Biostruc_features__item_ _Biostruc_model = SEQ_OF(name=u'model', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_model__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Biostruc-model'))) _Biostruc_model._cont = __Biostruc_model__item_ Biostruc._cont = ASN1Dict([ (u'id', _Biostruc_id), (u'descr', _Biostruc_descr), (u'chemical-graph', _Biostruc_chemical_graph), (u'features', _Biostruc_features), (u'model', _Biostruc_model), ]) Biostruc._ext = None #-----< Biostruc-id >-----# Biostruc_id = CHOICE(name=u'Biostruc-id', mode=MODE_TYPE) _Biostruc_id_mmdb_id = INT(name=u'mmdb-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Mmdb-id'))) _Biostruc_id_other_database = SEQ(name=u'other-database', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Biostruc_id_local_id = CHOICE(name=u'local-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) Biostruc_id._cont = ASN1Dict([ (u'mmdb-id', _Biostruc_id_mmdb_id), (u'other-database', _Biostruc_id_other_database), (u'local-id', _Biostruc_id_local_id), ]) Biostruc_id._ext = None #-----< Mmdb-id >-----# Mmdb_id = INT(name=u'Mmdb-id', mode=MODE_TYPE) #-----< Biostruc-descr >-----# Biostruc_descr = CHOICE(name=u'Biostruc-descr', mode=MODE_TYPE) _Biostruc_descr_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_descr_pdb_comment = STR_VIS(name=u'pdb-comment', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_descr_other_comment = STR_VIS(name=u'other-comment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_descr_history = SEQ(name=u'history', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-history'))) _Biostruc_descr_attribution = CHOICE(name=u'attribution', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) Biostruc_descr._cont = ASN1Dict([ (u'name', _Biostruc_descr_name), (u'pdb-comment', _Biostruc_descr_pdb_comment), (u'other-comment', _Biostruc_descr_other_comment), (u'history', _Biostruc_descr_history), (u'attribution', _Biostruc_descr_attribution), ]) Biostruc_descr._ext = None #-----< Biostruc-history >-----# Biostruc_history = SEQ(name=u'Biostruc-history', mode=MODE_TYPE) _Biostruc_history_replaces = SEQ(name=u'replaces', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-replace')), opt=True) _Biostruc_history_replaced_by = SEQ(name=u'replaced-by', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-replace')), opt=True) _Biostruc_history_data_source = SEQ(name=u'data-source', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-source')), opt=True) Biostruc_history._cont = ASN1Dict([ (u'replaces', _Biostruc_history_replaces), (u'replaced-by', _Biostruc_history_replaced_by), (u'data-source', _Biostruc_history_data_source), ]) Biostruc_history._ext = None #-----< Biostruc-replace >-----# Biostruc_replace = SEQ(name=u'Biostruc-replace', mode=MODE_TYPE) _Biostruc_replace_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_replace_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) Biostruc_replace._cont = ASN1Dict([ (u'id', _Biostruc_replace_id), (u'date', _Biostruc_replace_date), ]) Biostruc_replace._ext = None #-----< Biostruc-source >-----# Biostruc_source = SEQ(name=u'Biostruc-source', mode=MODE_TYPE) _Biostruc_source_name_of_database = STR_VIS(name=u'name-of-database', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_source_version_of_database = CHOICE(name=u'version-of-database', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __Biostruc_source_version_of_database_release_date = CHOICE(name=u'release-date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) __Biostruc_source_version_of_database_release_code = STR_VIS(name=u'release-code', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_source_version_of_database._cont = ASN1Dict([ (u'release-date', __Biostruc_source_version_of_database_release_date), (u'release-code', __Biostruc_source_version_of_database_release_code), ]) _Biostruc_source_version_of_database._ext = None _Biostruc_source_database_entry_id = CHOICE(name=u'database-entry-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_source_database_entry_date = CHOICE(name=u'database-entry-date', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Biostruc_source_database_entry_history = SEQ_OF(name=u'database-entry-history', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_source_database_entry_history__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Biostruc_source_database_entry_history._cont = __Biostruc_source_database_entry_history__item_ Biostruc_source._cont = ASN1Dict([ (u'name-of-database', _Biostruc_source_name_of_database), (u'version-of-database', _Biostruc_source_version_of_database), (u'database-entry-id', _Biostruc_source_database_entry_id), (u'database-entry-date', _Biostruc_source_database_entry_date), (u'database-entry-history', _Biostruc_source_database_entry_history), ]) Biostruc_source._ext = None #-----< Biostruc-set >-----# Biostruc_set = SEQ(name=u'Biostruc-set', mode=MODE_TYPE) _Biostruc_set_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_set_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_set_id._cont = __Biostruc_set_id__item_ _Biostruc_set_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_set_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-descr'))) _Biostruc_set_descr._cont = __Biostruc_set_descr__item_ _Biostruc_set_biostrucs = SEQ_OF(name=u'biostrucs', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_set_biostrucs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc'))) _Biostruc_set_biostrucs._cont = __Biostruc_set_biostrucs__item_ Biostruc_set._cont = ASN1Dict([ (u'id', _Biostruc_set_id), (u'descr', _Biostruc_set_descr), (u'biostrucs', _Biostruc_set_biostrucs), ]) Biostruc_set._ext = None #-----< Biostruc-annot-set >-----# Biostruc_annot_set = SEQ(name=u'Biostruc-annot-set', mode=MODE_TYPE) _Biostruc_annot_set_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_annot_set_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_annot_set_id._cont = __Biostruc_annot_set_id__item_ _Biostruc_annot_set_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_annot_set_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-descr'))) _Biostruc_annot_set_descr._cont = __Biostruc_annot_set_descr__item_ _Biostruc_annot_set_features = SEQ_OF(name=u'features', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_annot_set_features__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-set'))) _Biostruc_annot_set_features._cont = __Biostruc_annot_set_features__item_ Biostruc_annot_set._cont = ASN1Dict([ (u'id', _Biostruc_annot_set_id), (u'descr', _Biostruc_annot_set_descr), (u'features', _Biostruc_annot_set_features), ]) Biostruc_annot_set._ext = None #-----< Biostruc-residue-graph-set >-----# Biostruc_residue_graph_set = SEQ(name=u'Biostruc-residue-graph-set', mode=MODE_TYPE) _Biostruc_residue_graph_set_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_residue_graph_set_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_residue_graph_set_id._cont = __Biostruc_residue_graph_set_id__item_ _Biostruc_residue_graph_set_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_residue_graph_set_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biomol-descr'))) _Biostruc_residue_graph_set_descr._cont = __Biostruc_residue_graph_set_descr__item_ _Biostruc_residue_graph_set_residue_graphs = SEQ_OF(name=u'residue-graphs', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_residue_graph_set_residue_graphs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph'))) _Biostruc_residue_graph_set_residue_graphs._cont = __Biostruc_residue_graph_set_residue_graphs__item_ Biostruc_residue_graph_set._cont = ASN1Dict([ (u'id', _Biostruc_residue_graph_set_id), (u'descr', _Biostruc_residue_graph_set_descr), (u'residue-graphs', _Biostruc_residue_graph_set_residue_graphs), ]) Biostruc_residue_graph_set._ext = None _all_ = [ __Biostruc_id__item_, _Biostruc_id, __Biostruc_descr__item_, _Biostruc_descr, _Biostruc_chemical_graph, __Biostruc_features__item_, _Biostruc_features, __Biostruc_model__item_, _Biostruc_model, Biostruc, _Biostruc_id_mmdb_id, _Biostruc_id_other_database, _Biostruc_id_local_id, Biostruc_id, Mmdb_id, _Biostruc_descr_name, _Biostruc_descr_pdb_comment, _Biostruc_descr_other_comment, _Biostruc_descr_history, _Biostruc_descr_attribution, Biostruc_descr, _Biostruc_history_replaces, _Biostruc_history_replaced_by, _Biostruc_history_data_source, Biostruc_history, _Biostruc_replace_id, _Biostruc_replace_date, Biostruc_replace, _Biostruc_source_name_of_database, __Biostruc_source_version_of_database_release_date, __Biostruc_source_version_of_database_release_code, _Biostruc_source_version_of_database, _Biostruc_source_database_entry_id, _Biostruc_source_database_entry_date, __Biostruc_source_database_entry_history__item_, _Biostruc_source_database_entry_history, Biostruc_source, __Biostruc_set_id__item_, _Biostruc_set_id, __Biostruc_set_descr__item_, _Biostruc_set_descr, __Biostruc_set_biostrucs__item_, _Biostruc_set_biostrucs, Biostruc_set, __Biostruc_annot_set_id__item_, _Biostruc_annot_set_id, __Biostruc_annot_set_descr__item_, _Biostruc_annot_set_descr, __Biostruc_annot_set_features__item_, _Biostruc_annot_set_features, Biostruc_annot_set, __Biostruc_residue_graph_set_id__item_, _Biostruc_residue_graph_set_id, __Biostruc_residue_graph_set_descr__item_, _Biostruc_residue_graph_set_descr, __Biostruc_residue_graph_set_residue_graphs__item_, _Biostruc_residue_graph_set_residue_graphs, Biostruc_residue_graph_set, ] class MMDB_Chemical_graph: _name_ = u'MMDB-Chemical-graph' _oid_ = [] _obj_ = [ u'Biostruc-graph', u'Biomol-descr', u'Molecule-graph', u'Molecule-id', u'PCSubstance-id', u'Residue', u'Residue-id', u'Residue-graph-pntr', u'Biostruc-graph-pntr', u'Biostruc-residue-graph-set-pntr', u'Residue-graph', u'Residue-graph-id', u'Atom', u'Atom-id', u'Intra-residue-bond', u'Chiral-center', u'Inter-residue-bond', u'Atom-pntr', u'Atom-pntr-set', ] _type_ = [ u'Biostruc-graph', u'Biomol-descr', u'Molecule-graph', u'Molecule-id', u'PCSubstance-id', u'Residue', u'Residue-id', u'Residue-graph-pntr', u'Biostruc-graph-pntr', u'Biostruc-residue-graph-set-pntr', u'Residue-graph', u'Residue-graph-id', u'Atom', u'Atom-id', u'Intra-residue-bond', u'Chiral-center', u'Inter-residue-bond', u'Atom-pntr', u'Atom-pntr-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Biostruc-graph >-----# Biostruc_graph = SEQ(name=u'Biostruc-graph', mode=MODE_TYPE) _Biostruc_graph_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_graph_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biomol-descr'))) _Biostruc_graph_descr._cont = __Biostruc_graph_descr__item_ _Biostruc_graph_molecule_graphs = SEQ_OF(name=u'molecule-graphs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_graph_molecule_graphs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-graph'))) _Biostruc_graph_molecule_graphs._cont = __Biostruc_graph_molecule_graphs__item_ _Biostruc_graph_inter_molecule_bonds = SEQ_OF(name=u'inter-molecule-bonds', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_graph_inter_molecule_bonds__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Inter-residue-bond'))) _Biostruc_graph_inter_molecule_bonds._cont = __Biostruc_graph_inter_molecule_bonds__item_ _Biostruc_graph_residue_graphs = SEQ_OF(name=u'residue-graphs', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_graph_residue_graphs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph'))) _Biostruc_graph_residue_graphs._cont = __Biostruc_graph_residue_graphs__item_ Biostruc_graph._cont = ASN1Dict([ (u'descr', _Biostruc_graph_descr), (u'molecule-graphs', _Biostruc_graph_molecule_graphs), (u'inter-molecule-bonds', _Biostruc_graph_inter_molecule_bonds), (u'residue-graphs', _Biostruc_graph_residue_graphs), ]) Biostruc_graph._ext = None #-----< Biomol-descr >-----# Biomol_descr = CHOICE(name=u'Biomol-descr', mode=MODE_TYPE) _Biomol_descr_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_pdb_class = STR_VIS(name=u'pdb-class', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_pdb_source = STR_VIS(name=u'pdb-source', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_pdb_comment = STR_VIS(name=u'pdb-comment', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_other_comment = STR_VIS(name=u'other-comment', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_organism = SEQ(name=u'organism', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'BioSource'))) _Biomol_descr_attribution = CHOICE(name=u'attribution', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Biomol_descr_assembly_type = INT(name=u'assembly-type', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_assembly_type._cont = ASN1Dict([(u'physiological-form', 1), (u'crystallographic-cell', 2), (u'other', 255)]) _Biomol_descr_molecule_type = INT(name=u'molecule-type', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biomol_descr_molecule_type._cont = ASN1Dict([(u'dna', 1), (u'rna', 2), (u'protein', 3), (u'other-biopolymer', 4), (u'solvent', 5), (u'other-nonpolymer', 6), (u'other', 255)]) Biomol_descr._cont = ASN1Dict([ (u'name', _Biomol_descr_name), (u'pdb-class', _Biomol_descr_pdb_class), (u'pdb-source', _Biomol_descr_pdb_source), (u'pdb-comment', _Biomol_descr_pdb_comment), (u'other-comment', _Biomol_descr_other_comment), (u'organism', _Biomol_descr_organism), (u'attribution', _Biomol_descr_attribution), (u'assembly-type', _Biomol_descr_assembly_type), (u'molecule-type', _Biomol_descr_molecule_type), ]) Biomol_descr._ext = None #-----< Molecule-graph >-----# Molecule_graph = SEQ(name=u'Molecule-graph', mode=MODE_TYPE) _Molecule_graph_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Molecule_graph_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Molecule_graph_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biomol-descr'))) _Molecule_graph_descr._cont = __Molecule_graph_descr__item_ _Molecule_graph_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _Molecule_graph_residue_sequence = SEQ_OF(name=u'residue-sequence', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Molecule_graph_residue_sequence__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue'))) _Molecule_graph_residue_sequence._cont = __Molecule_graph_residue_sequence__item_ _Molecule_graph_inter_residue_bonds = SEQ_OF(name=u'inter-residue-bonds', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Molecule_graph_inter_residue_bonds__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Inter-residue-bond'))) _Molecule_graph_inter_residue_bonds._cont = __Molecule_graph_inter_residue_bonds__item_ _Molecule_graph_sid = INT(name=u'sid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'PCSubstance-id')), opt=True) Molecule_graph._cont = ASN1Dict([ (u'id', _Molecule_graph_id), (u'descr', _Molecule_graph_descr), (u'seq-id', _Molecule_graph_seq_id), (u'residue-sequence', _Molecule_graph_residue_sequence), (u'inter-residue-bonds', _Molecule_graph_inter_residue_bonds), (u'sid', _Molecule_graph_sid), ]) Molecule_graph._ext = None #-----< Molecule-id >-----# Molecule_id = INT(name=u'Molecule-id', mode=MODE_TYPE) #-----< PCSubstance-id >-----# PCSubstance_id = INT(name=u'PCSubstance-id', mode=MODE_TYPE) #-----< Residue >-----# Residue = SEQ(name=u'Residue', mode=MODE_TYPE) _Residue_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) _Residue_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Residue_residue_graph = CHOICE(name=u'residue-graph', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph-pntr'))) Residue._cont = ASN1Dict([ (u'id', _Residue_id), (u'name', _Residue_name), (u'residue-graph', _Residue_residue_graph), ]) Residue._ext = None #-----< Residue-id >-----# Residue_id = INT(name=u'Residue-id', mode=MODE_TYPE) #-----< Residue-graph-pntr >-----# Residue_graph_pntr = CHOICE(name=u'Residue-graph-pntr', mode=MODE_TYPE) _Residue_graph_pntr_local = INT(name=u'local', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph-id'))) _Residue_graph_pntr_biostruc = SEQ(name=u'biostruc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biostruc-graph-pntr'))) _Residue_graph_pntr_standard = SEQ(name=u'standard', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biostruc-residue-graph-set-pntr'))) Residue_graph_pntr._cont = ASN1Dict([ (u'local', _Residue_graph_pntr_local), (u'biostruc', _Residue_graph_pntr_biostruc), (u'standard', _Residue_graph_pntr_standard), ]) Residue_graph_pntr._ext = None #-----< Biostruc-graph-pntr >-----# Biostruc_graph_pntr = SEQ(name=u'Biostruc-graph-pntr', mode=MODE_TYPE) _Biostruc_graph_pntr_biostruc_id = CHOICE(name=u'biostruc-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_graph_pntr_residue_graph_id = INT(name=u'residue-graph-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph-id'))) Biostruc_graph_pntr._cont = ASN1Dict([ (u'biostruc-id', _Biostruc_graph_pntr_biostruc_id), (u'residue-graph-id', _Biostruc_graph_pntr_residue_graph_id), ]) Biostruc_graph_pntr._ext = None #-----< Biostruc-residue-graph-set-pntr >-----# Biostruc_residue_graph_set_pntr = SEQ(name=u'Biostruc-residue-graph-set-pntr', mode=MODE_TYPE) _Biostruc_residue_graph_set_pntr_biostruc_residue_graph_set_id = CHOICE(name=u'biostruc-residue-graph-set-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_residue_graph_set_pntr_residue_graph_id = INT(name=u'residue-graph-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph-id'))) Biostruc_residue_graph_set_pntr._cont = ASN1Dict([ (u'biostruc-residue-graph-set-id', _Biostruc_residue_graph_set_pntr_biostruc_residue_graph_set_id), (u'residue-graph-id', _Biostruc_residue_graph_set_pntr_residue_graph_id), ]) Biostruc_residue_graph_set_pntr._ext = None #-----< Residue-graph >-----# Residue_graph = SEQ(name=u'Residue-graph', mode=MODE_TYPE) _Residue_graph_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-graph-id'))) _Residue_graph_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Residue_graph_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Biomol-descr'))) _Residue_graph_descr._cont = __Residue_graph_descr__item_ _Residue_graph_residue_type = INT(name=u'residue-type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Residue_graph_residue_type._cont = ASN1Dict([(u'deoxyribonucleotide', 1), (u'ribonucleotide', 2), (u'amino-acid', 3), (u'other', 255)]) _Residue_graph_iupac_code = SEQ_OF(name=u'iupac-code', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Residue_graph_iupac_code__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Residue_graph_iupac_code._cont = __Residue_graph_iupac_code__item_ _Residue_graph_atoms = SEQ_OF(name=u'atoms', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Residue_graph_atoms__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom'))) _Residue_graph_atoms._cont = __Residue_graph_atoms__item_ _Residue_graph_bonds = SEQ_OF(name=u'bonds', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Residue_graph_bonds__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Intra-residue-bond'))) _Residue_graph_bonds._cont = __Residue_graph_bonds__item_ _Residue_graph_chiral_centers = SEQ_OF(name=u'chiral-centers', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Residue_graph_chiral_centers__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Chiral-center'))) _Residue_graph_chiral_centers._cont = __Residue_graph_chiral_centers__item_ Residue_graph._cont = ASN1Dict([ (u'id', _Residue_graph_id), (u'descr', _Residue_graph_descr), (u'residue-type', _Residue_graph_residue_type), (u'iupac-code', _Residue_graph_iupac_code), (u'atoms', _Residue_graph_atoms), (u'bonds', _Residue_graph_bonds), (u'chiral-centers', _Residue_graph_chiral_centers), ]) Residue_graph._ext = None #-----< Residue-graph-id >-----# Residue_graph_id = INT(name=u'Residue-graph-id', mode=MODE_TYPE) #-----< Atom >-----# Atom = SEQ(name=u'Atom', mode=MODE_TYPE) _Atom_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Atom_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Atom_iupac_code = SEQ_OF(name=u'iupac-code', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Atom_iupac_code__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Atom_iupac_code._cont = __Atom_iupac_code__item_ _Atom_element = ENUM(name=u'element', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Atom_element._cont = ASN1Dict([(u'h', 1), (u'he', 2), (u'li', 3), (u'be', 4), (u'b', 5), (u'c', 6), (u'n', 7), (u'o', 8), (u'f', 9), (u'ne', 10), (u'na', 11), (u'mg', 12), (u'al', 13), (u'si', 14), (u'p', 15), (u's', 16), (u'cl', 17), (u'ar', 18), (u'k', 19), (u'ca', 20), (u'sc', 21), (u'ti', 22), (u'v', 23), (u'cr', 24), (u'mn', 25), (u'fe', 26), (u'co', 27), (u'ni', 28), (u'cu', 29), (u'zn', 30), (u'ga', 31), (u'ge', 32), (u'as', 33), (u'se', 34), (u'br', 35), (u'kr', 36), (u'rb', 37), (u'sr', 38), (u'y', 39), (u'zr', 40), (u'nb', 41), (u'mo', 42), (u'tc', 43), (u'ru', 44), (u'rh', 45), (u'pd', 46), (u'ag', 47), (u'cd', 48), (u'in', 49), (u'sn', 50), (u'sb', 51), (u'te', 52), (u'i', 53), (u'xe', 54), (u'cs', 55), (u'ba', 56), (u'la', 57), (u'ce', 58), (u'pr', 59), (u'nd', 60), (u'pm', 61), (u'sm', 62), (u'eu', 63), (u'gd', 64), (u'tb', 65), (u'dy', 66), (u'ho', 67), (u'er', 68), (u'tm', 69), (u'yb', 70), (u'lu', 71), (u'hf', 72), (u'ta', 73), (u'w', 74), (u're', 75), (u'os', 76), (u'ir', 77), (u'pt', 78), (u'au', 79), (u'hg', 80), (u'tl', 81), (u'pb', 82), (u'bi', 83), (u'po', 84), (u'at', 85), (u'rn', 86), (u'fr', 87), (u'ra', 88), (u'ac', 89), (u'th', 90), (u'pa', 91), (u'u', 92), (u'np', 93), (u'pu', 94), (u'am', 95), (u'cm', 96), (u'bk', 97), (u'cf', 98), (u'es', 99), (u'fm', 100), (u'md', 101), (u'no', 102), (u'lr', 103), (u'other', 254), (u'unknown', 255)]) _Atom_element._ext = None _Atom_ionizable_proton = ENUM(name=u'ionizable-proton', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Atom_ionizable_proton._cont = ASN1Dict([(u'true', 1), (u'false', 2), (u'unknown', 255)]) _Atom_ionizable_proton._ext = None Atom._cont = ASN1Dict([ (u'id', _Atom_id), (u'name', _Atom_name), (u'iupac-code', _Atom_iupac_code), (u'element', _Atom_element), (u'ionizable-proton', _Atom_ionizable_proton), ]) Atom._ext = None #-----< Atom-id >-----# Atom_id = INT(name=u'Atom-id', mode=MODE_TYPE) #-----< Intra-residue-bond >-----# Intra_residue_bond = SEQ(name=u'Intra-residue-bond', mode=MODE_TYPE) _Intra_residue_bond_atom_id_1 = INT(name=u'atom-id-1', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Intra_residue_bond_atom_id_2 = INT(name=u'atom-id-2', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Intra_residue_bond_bond_order = INT(name=u'bond-order', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Intra_residue_bond_bond_order._cont = ASN1Dict([(u'single', 1), (u'partial-double', 2), (u'aromatic', 3), (u'double', 4), (u'triple', 5), (u'other', 6), (u'unknown', 255)]) Intra_residue_bond._cont = ASN1Dict([ (u'atom-id-1', _Intra_residue_bond_atom_id_1), (u'atom-id-2', _Intra_residue_bond_atom_id_2), (u'bond-order', _Intra_residue_bond_bond_order), ]) Intra_residue_bond._ext = None #-----< Chiral-center >-----# Chiral_center = SEQ(name=u'Chiral-center', mode=MODE_TYPE) _Chiral_center_c = INT(name=u'c', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Chiral_center_n1 = INT(name=u'n1', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Chiral_center_n2 = INT(name=u'n2', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Chiral_center_n3 = INT(name=u'n3', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Chiral_center_sign = ENUM(name=u'sign', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Chiral_center_sign._cont = ASN1Dict([(u'positive', 1), (u'negative', 2)]) _Chiral_center_sign._ext = None Chiral_center._cont = ASN1Dict([ (u'c', _Chiral_center_c), (u'n1', _Chiral_center_n1), (u'n2', _Chiral_center_n2), (u'n3', _Chiral_center_n3), (u'sign', _Chiral_center_sign), ]) Chiral_center._ext = None #-----< Inter-residue-bond >-----# Inter_residue_bond = SEQ(name=u'Inter-residue-bond', mode=MODE_TYPE) _Inter_residue_bond_atom_id_1 = SEQ(name=u'atom-id-1', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-pntr'))) _Inter_residue_bond_atom_id_2 = SEQ(name=u'atom-id-2', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-pntr'))) _Inter_residue_bond_bond_order = INT(name=u'bond-order', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Inter_residue_bond_bond_order._cont = ASN1Dict([(u'single', 1), (u'partial-double', 2), (u'aromatic', 3), (u'double', 4), (u'triple', 5), (u'other', 6), (u'unknown', 255)]) Inter_residue_bond._cont = ASN1Dict([ (u'atom-id-1', _Inter_residue_bond_atom_id_1), (u'atom-id-2', _Inter_residue_bond_atom_id_2), (u'bond-order', _Inter_residue_bond_bond_order), ]) Inter_residue_bond._ext = None #-----< Atom-pntr >-----# Atom_pntr = SEQ(name=u'Atom-pntr', mode=MODE_TYPE) _Atom_pntr_molecule_id = INT(name=u'molecule-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Atom_pntr_residue_id = INT(name=u'residue-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) _Atom_pntr_atom_id = INT(name=u'atom-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) Atom_pntr._cont = ASN1Dict([ (u'molecule-id', _Atom_pntr_molecule_id), (u'residue-id', _Atom_pntr_residue_id), (u'atom-id', _Atom_pntr_atom_id), ]) Atom_pntr._ext = None #-----< Atom-pntr-set >-----# Atom_pntr_set = SEQ_OF(name=u'Atom-pntr-set', mode=MODE_TYPE) _Atom_pntr_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-pntr'))) Atom_pntr_set._cont = _Atom_pntr_set__item_ _all_ = [ __Biostruc_graph_descr__item_, _Biostruc_graph_descr, __Biostruc_graph_molecule_graphs__item_, _Biostruc_graph_molecule_graphs, __Biostruc_graph_inter_molecule_bonds__item_, _Biostruc_graph_inter_molecule_bonds, __Biostruc_graph_residue_graphs__item_, _Biostruc_graph_residue_graphs, Biostruc_graph, _Biomol_descr_name, _Biomol_descr_pdb_class, _Biomol_descr_pdb_source, _Biomol_descr_pdb_comment, _Biomol_descr_other_comment, _Biomol_descr_organism, _Biomol_descr_attribution, _Biomol_descr_assembly_type, _Biomol_descr_molecule_type, Biomol_descr, _Molecule_graph_id, __Molecule_graph_descr__item_, _Molecule_graph_descr, _Molecule_graph_seq_id, __Molecule_graph_residue_sequence__item_, _Molecule_graph_residue_sequence, __Molecule_graph_inter_residue_bonds__item_, _Molecule_graph_inter_residue_bonds, _Molecule_graph_sid, Molecule_graph, Molecule_id, PCSubstance_id, _Residue_id, _Residue_name, _Residue_residue_graph, Residue, Residue_id, _Residue_graph_pntr_local, _Residue_graph_pntr_biostruc, _Residue_graph_pntr_standard, Residue_graph_pntr, _Biostruc_graph_pntr_biostruc_id, _Biostruc_graph_pntr_residue_graph_id, Biostruc_graph_pntr, _Biostruc_residue_graph_set_pntr_biostruc_residue_graph_set_id, _Biostruc_residue_graph_set_pntr_residue_graph_id, Biostruc_residue_graph_set_pntr, _Residue_graph_id, __Residue_graph_descr__item_, _Residue_graph_descr, _Residue_graph_residue_type, __Residue_graph_iupac_code__item_, _Residue_graph_iupac_code, __Residue_graph_atoms__item_, _Residue_graph_atoms, __Residue_graph_bonds__item_, _Residue_graph_bonds, __Residue_graph_chiral_centers__item_, _Residue_graph_chiral_centers, Residue_graph, Residue_graph_id, _Atom_id, _Atom_name, __Atom_iupac_code__item_, _Atom_iupac_code, _Atom_element, _Atom_ionizable_proton, Atom, Atom_id, _Intra_residue_bond_atom_id_1, _Intra_residue_bond_atom_id_2, _Intra_residue_bond_bond_order, Intra_residue_bond, _Chiral_center_c, _Chiral_center_n1, _Chiral_center_n2, _Chiral_center_n3, _Chiral_center_sign, Chiral_center, _Inter_residue_bond_atom_id_1, _Inter_residue_bond_atom_id_2, _Inter_residue_bond_bond_order, Inter_residue_bond, _Atom_pntr_molecule_id, _Atom_pntr_residue_id, _Atom_pntr_atom_id, Atom_pntr, _Atom_pntr_set__item_, Atom_pntr_set, ] class MMDB_Structural_model: _name_ = u'MMDB-Structural-model' _oid_ = [] _obj_ = [ u'Biostruc-model', u'Model-id', u'Model-type', u'Model-descr', u'Model-space', u'Reference-frame', u'Model-coordinate-set', u'Model-coordinate-set-id', u'Coordinates', u'Atomic-coordinates', u'Model-space-points', u'Atomic-temperature-factors', u'Isotropic-temperature-factors', u'Anisotropic-temperature-factors', u'Atomic-occupancies', u'Alternate-conformation-ids', u'Alternate-conformation-id', u'Conformation-ensemble', u'Surface-coordinates', u'T-mesh', u'Triangles', u'Density-coordinates', ] _type_ = [ u'Biostruc-model', u'Model-id', u'Model-type', u'Model-descr', u'Model-space', u'Reference-frame', u'Model-coordinate-set', u'Model-coordinate-set-id', u'Coordinates', u'Atomic-coordinates', u'Model-space-points', u'Atomic-temperature-factors', u'Isotropic-temperature-factors', u'Anisotropic-temperature-factors', u'Atomic-occupancies', u'Alternate-conformation-ids', u'Alternate-conformation-id', u'Conformation-ensemble', u'Surface-coordinates', u'T-mesh', u'Triangles', u'Density-coordinates', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Biostruc-model >-----# Biostruc_model = SEQ(name=u'Biostruc-model', mode=MODE_TYPE) _Biostruc_model_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-id'))) _Biostruc_model_type = INT(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-type'))) _Biostruc_model_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_model_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Model-descr'))) _Biostruc_model_descr._cont = __Biostruc_model_descr__item_ _Biostruc_model_model_space = SEQ(name=u'model-space', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-space')), opt=True) _Biostruc_model_model_coordinates = SEQ_OF(name=u'model-coordinates', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_model_model_coordinates__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Model-coordinate-set'))) _Biostruc_model_model_coordinates._cont = __Biostruc_model_model_coordinates__item_ Biostruc_model._cont = ASN1Dict([ (u'id', _Biostruc_model_id), (u'type', _Biostruc_model_type), (u'descr', _Biostruc_model_descr), (u'model-space', _Biostruc_model_model_space), (u'model-coordinates', _Biostruc_model_model_coordinates), ]) Biostruc_model._ext = None #-----< Model-id >-----# Model_id = INT(name=u'Model-id', mode=MODE_TYPE) #-----< Model-type >-----# Model_type = INT(name=u'Model-type', mode=MODE_TYPE) Model_type._cont = ASN1Dict([(u'ncbi-vector', 1), (u'ncbi-backbone', 2), (u'ncbi-all-atom', 3), (u'pdb-model', 4), (u'other', 255)]) #-----< Model-descr >-----# Model_descr = CHOICE(name=u'Model-descr', mode=MODE_TYPE) _Model_descr_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_descr_pdb_reso = STR_VIS(name=u'pdb-reso', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_descr_pdb_method = STR_VIS(name=u'pdb-method', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_descr_pdb_comment = STR_VIS(name=u'pdb-comment', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_descr_other_comment = STR_VIS(name=u'other-comment', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_descr_attribution = CHOICE(name=u'attribution', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) Model_descr._cont = ASN1Dict([ (u'name', _Model_descr_name), (u'pdb-reso', _Model_descr_pdb_reso), (u'pdb-method', _Model_descr_pdb_method), (u'pdb-comment', _Model_descr_pdb_comment), (u'other-comment', _Model_descr_other_comment), (u'attribution', _Model_descr_attribution), ]) Model_descr._ext = None #-----< Model-space >-----# Model_space = SEQ(name=u'Model-space', mode=MODE_TYPE) _Model_space_coordinate_units = ENUM(name=u'coordinate-units', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_space_coordinate_units._cont = ASN1Dict([(u'angstroms', 1), (u'nanometers', 2), (u'other', 3), (u'unknown', 255)]) _Model_space_coordinate_units._ext = None _Model_space_thermal_factor_units = ENUM(name=u'thermal-factor-units', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Model_space_thermal_factor_units._cont = ASN1Dict([(u'b', 1), (u'u', 2), (u'other', 3), (u'unknown', 255)]) _Model_space_thermal_factor_units._ext = None _Model_space_occupancy_factor_units = ENUM(name=u'occupancy-factor-units', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Model_space_occupancy_factor_units._cont = ASN1Dict([(u'fractional', 1), (u'electrons', 2), (u'other', 3), (u'unknown', 255)]) _Model_space_occupancy_factor_units._ext = None _Model_space_density_units = ENUM(name=u'density-units', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Model_space_density_units._cont = ASN1Dict([(u'electrons-per-unit-volume', 1), (u'arbitrary-scale', 2), (u'other', 3), (u'unknown', 255)]) _Model_space_density_units._ext = None _Model_space_reference_frame = SEQ(name=u'reference-frame', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Reference-frame')), opt=True) Model_space._cont = ASN1Dict([ (u'coordinate-units', _Model_space_coordinate_units), (u'thermal-factor-units', _Model_space_thermal_factor_units), (u'occupancy-factor-units', _Model_space_occupancy_factor_units), (u'density-units', _Model_space_density_units), (u'reference-frame', _Model_space_reference_frame), ]) Model_space._ext = None #-----< Reference-frame >-----# Reference_frame = SEQ(name=u'Reference-frame', mode=MODE_TYPE) _Reference_frame_biostruc_id = CHOICE(name=u'biostruc-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Reference_frame_rotation_translation = SEQ(name=u'rotation-translation', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Transform')), opt=True) Reference_frame._cont = ASN1Dict([ (u'biostruc-id', _Reference_frame_biostruc_id), (u'rotation-translation', _Reference_frame_rotation_translation), ]) Reference_frame._ext = None #-----< Model-coordinate-set >-----# Model_coordinate_set = SEQ(name=u'Model-coordinate-set', mode=MODE_TYPE) _Model_coordinate_set_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-coordinate-set-id')), opt=True) _Model_coordinate_set_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Model_coordinate_set_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Model-descr'))) _Model_coordinate_set_descr._cont = __Model_coordinate_set_descr__item_ _Model_coordinate_set_coordinates = CHOICE(name=u'coordinates', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Model_coordinate_set_coordinates_literal = CHOICE(name=u'literal', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Coordinates'))) __Model_coordinate_set_coordinates_reference = SEQ(name=u'reference', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-alignment'))) _Model_coordinate_set_coordinates._cont = ASN1Dict([ (u'literal', __Model_coordinate_set_coordinates_literal), (u'reference', __Model_coordinate_set_coordinates_reference), ]) _Model_coordinate_set_coordinates._ext = None Model_coordinate_set._cont = ASN1Dict([ (u'id', _Model_coordinate_set_id), (u'descr', _Model_coordinate_set_descr), (u'coordinates', _Model_coordinate_set_coordinates), ]) Model_coordinate_set._ext = None #-----< Model-coordinate-set-id >-----# Model_coordinate_set_id = INT(name=u'Model-coordinate-set-id', mode=MODE_TYPE) #-----< Coordinates >-----# Coordinates = CHOICE(name=u'Coordinates', mode=MODE_TYPE) _Coordinates_atomic = SEQ(name=u'atomic', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Atomic-coordinates'))) _Coordinates_surface = SEQ(name=u'surface', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Surface-coordinates'))) _Coordinates_density = SEQ(name=u'density', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Density-coordinates'))) Coordinates._cont = ASN1Dict([ (u'atomic', _Coordinates_atomic), (u'surface', _Coordinates_surface), (u'density', _Coordinates_density), ]) Coordinates._ext = None #-----< Atomic-coordinates >-----# Atomic_coordinates = SEQ(name=u'Atomic-coordinates', mode=MODE_TYPE) _Atomic_coordinates_number_of_points = INT(name=u'number-of-points', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Atomic_coordinates_atoms = SEQ(name=u'atoms', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Atom-pntrs'))) _Atomic_coordinates_sites = SEQ(name=u'sites', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-space-points'))) _Atomic_coordinates_temperature_factors = CHOICE(name=u'temperature-factors', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Atomic-temperature-factors')), opt=True) _Atomic_coordinates_occupancies = SEQ(name=u'occupancies', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Atomic-occupancies')), opt=True) _Atomic_coordinates_alternate_conf_ids = SEQ_OF(name=u'alternate-conf-ids', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Alternate-conformation-ids')), opt=True) _Atomic_coordinates_conf_ensembles = SEQ_OF(name=u'conf-ensembles', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Atomic_coordinates_conf_ensembles__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Conformation-ensemble'))) _Atomic_coordinates_conf_ensembles._cont = __Atomic_coordinates_conf_ensembles__item_ Atomic_coordinates._cont = ASN1Dict([ (u'number-of-points', _Atomic_coordinates_number_of_points), (u'atoms', _Atomic_coordinates_atoms), (u'sites', _Atomic_coordinates_sites), (u'temperature-factors', _Atomic_coordinates_temperature_factors), (u'occupancies', _Atomic_coordinates_occupancies), (u'alternate-conf-ids', _Atomic_coordinates_alternate_conf_ids), (u'conf-ensembles', _Atomic_coordinates_conf_ensembles), ]) Atomic_coordinates._ext = None #-----< Model-space-points >-----# Model_space_points = SEQ(name=u'Model-space-points', mode=MODE_TYPE) _Model_space_points_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_space_points_x = SEQ_OF(name=u'x', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Model_space_points_x__item_ = INT(name='_item_', mode=MODE_TYPE) _Model_space_points_x._cont = __Model_space_points_x__item_ _Model_space_points_y = SEQ_OF(name=u'y', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Model_space_points_y__item_ = INT(name='_item_', mode=MODE_TYPE) _Model_space_points_y._cont = __Model_space_points_y__item_ _Model_space_points_z = SEQ_OF(name=u'z', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Model_space_points_z__item_ = INT(name='_item_', mode=MODE_TYPE) _Model_space_points_z._cont = __Model_space_points_z__item_ Model_space_points._cont = ASN1Dict([ (u'scale-factor', _Model_space_points_scale_factor), (u'x', _Model_space_points_x), (u'y', _Model_space_points_y), (u'z', _Model_space_points_z), ]) Model_space_points._ext = None #-----< Atomic-temperature-factors >-----# Atomic_temperature_factors = CHOICE(name=u'Atomic-temperature-factors', mode=MODE_TYPE) _Atomic_temperature_factors_isotropic = SEQ(name=u'isotropic', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Isotropic-temperature-factors'))) _Atomic_temperature_factors_anisotropic = SEQ(name=u'anisotropic', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Anisotropic-temperature-factors'))) Atomic_temperature_factors._cont = ASN1Dict([ (u'isotropic', _Atomic_temperature_factors_isotropic), (u'anisotropic', _Atomic_temperature_factors_anisotropic), ]) Atomic_temperature_factors._ext = None #-----< Isotropic-temperature-factors >-----# Isotropic_temperature_factors = SEQ(name=u'Isotropic-temperature-factors', mode=MODE_TYPE) _Isotropic_temperature_factors_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Isotropic_temperature_factors_b = SEQ_OF(name=u'b', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Isotropic_temperature_factors_b__item_ = INT(name='_item_', mode=MODE_TYPE) _Isotropic_temperature_factors_b._cont = __Isotropic_temperature_factors_b__item_ Isotropic_temperature_factors._cont = ASN1Dict([ (u'scale-factor', _Isotropic_temperature_factors_scale_factor), (u'b', _Isotropic_temperature_factors_b), ]) Isotropic_temperature_factors._ext = None #-----< Anisotropic-temperature-factors >-----# Anisotropic_temperature_factors = SEQ(name=u'Anisotropic-temperature-factors', mode=MODE_TYPE) _Anisotropic_temperature_factors_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Anisotropic_temperature_factors_b_11 = SEQ_OF(name=u'b-11', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Anisotropic_temperature_factors_b_11__item_ = INT(name='_item_', mode=MODE_TYPE) _Anisotropic_temperature_factors_b_11._cont = __Anisotropic_temperature_factors_b_11__item_ _Anisotropic_temperature_factors_b_12 = SEQ_OF(name=u'b-12', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Anisotropic_temperature_factors_b_12__item_ = INT(name='_item_', mode=MODE_TYPE) _Anisotropic_temperature_factors_b_12._cont = __Anisotropic_temperature_factors_b_12__item_ _Anisotropic_temperature_factors_b_13 = SEQ_OF(name=u'b-13', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Anisotropic_temperature_factors_b_13__item_ = INT(name='_item_', mode=MODE_TYPE) _Anisotropic_temperature_factors_b_13._cont = __Anisotropic_temperature_factors_b_13__item_ _Anisotropic_temperature_factors_b_22 = SEQ_OF(name=u'b-22', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Anisotropic_temperature_factors_b_22__item_ = INT(name='_item_', mode=MODE_TYPE) _Anisotropic_temperature_factors_b_22._cont = __Anisotropic_temperature_factors_b_22__item_ _Anisotropic_temperature_factors_b_23 = SEQ_OF(name=u'b-23', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Anisotropic_temperature_factors_b_23__item_ = INT(name='_item_', mode=MODE_TYPE) _Anisotropic_temperature_factors_b_23._cont = __Anisotropic_temperature_factors_b_23__item_ _Anisotropic_temperature_factors_b_33 = SEQ_OF(name=u'b-33', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Anisotropic_temperature_factors_b_33__item_ = INT(name='_item_', mode=MODE_TYPE) _Anisotropic_temperature_factors_b_33._cont = __Anisotropic_temperature_factors_b_33__item_ Anisotropic_temperature_factors._cont = ASN1Dict([ (u'scale-factor', _Anisotropic_temperature_factors_scale_factor), (u'b-11', _Anisotropic_temperature_factors_b_11), (u'b-12', _Anisotropic_temperature_factors_b_12), (u'b-13', _Anisotropic_temperature_factors_b_13), (u'b-22', _Anisotropic_temperature_factors_b_22), (u'b-23', _Anisotropic_temperature_factors_b_23), (u'b-33', _Anisotropic_temperature_factors_b_33), ]) Anisotropic_temperature_factors._ext = None #-----< Atomic-occupancies >-----# Atomic_occupancies = SEQ(name=u'Atomic-occupancies', mode=MODE_TYPE) _Atomic_occupancies_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Atomic_occupancies_o = SEQ_OF(name=u'o', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Atomic_occupancies_o__item_ = INT(name='_item_', mode=MODE_TYPE) _Atomic_occupancies_o._cont = __Atomic_occupancies_o__item_ Atomic_occupancies._cont = ASN1Dict([ (u'scale-factor', _Atomic_occupancies_scale_factor), (u'o', _Atomic_occupancies_o), ]) Atomic_occupancies._ext = None #-----< Alternate-conformation-ids >-----# Alternate_conformation_ids = SEQ_OF(name=u'Alternate-conformation-ids', mode=MODE_TYPE) _Alternate_conformation_ids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Alternate-conformation-id'))) Alternate_conformation_ids._cont = _Alternate_conformation_ids__item_ #-----< Alternate-conformation-id >-----# Alternate_conformation_id = STR_VIS(name=u'Alternate-conformation-id', mode=MODE_TYPE) #-----< Conformation-ensemble >-----# Conformation_ensemble = SEQ(name=u'Conformation-ensemble', mode=MODE_TYPE) _Conformation_ensemble_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Conformation_ensemble_alt_conf_ids = SEQ_OF(name=u'alt-conf-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Conformation_ensemble_alt_conf_ids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Structural-model', 'Alternate-conformation-id'))) _Conformation_ensemble_alt_conf_ids._cont = __Conformation_ensemble_alt_conf_ids__item_ Conformation_ensemble._cont = ASN1Dict([ (u'name', _Conformation_ensemble_name), (u'alt-conf-ids', _Conformation_ensemble_alt_conf_ids), ]) Conformation_ensemble._ext = None #-----< Surface-coordinates >-----# Surface_coordinates = SEQ(name=u'Surface-coordinates', mode=MODE_TYPE) _Surface_coordinates_contents = CHOICE(name=u'contents', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) _Surface_coordinates_surface = CHOICE(name=u'surface', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Surface_coordinates_surface_sphere = SEQ(name=u'sphere', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Sphere'))) __Surface_coordinates_surface_cone = SEQ(name=u'cone', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Cone'))) __Surface_coordinates_surface_cylinder = SEQ(name=u'cylinder', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Cylinder'))) __Surface_coordinates_surface_brick = SEQ(name=u'brick', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Brick'))) __Surface_coordinates_surface_tmesh = SEQ(name=u'tmesh', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'T-mesh'))) __Surface_coordinates_surface_triangles = SEQ(name=u'triangles', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Triangles'))) _Surface_coordinates_surface._cont = ASN1Dict([ (u'sphere', __Surface_coordinates_surface_sphere), (u'cone', __Surface_coordinates_surface_cone), (u'cylinder', __Surface_coordinates_surface_cylinder), (u'brick', __Surface_coordinates_surface_brick), (u'tmesh', __Surface_coordinates_surface_tmesh), (u'triangles', __Surface_coordinates_surface_triangles), ]) _Surface_coordinates_surface._ext = None Surface_coordinates._cont = ASN1Dict([ (u'contents', _Surface_coordinates_contents), (u'surface', _Surface_coordinates_surface), ]) Surface_coordinates._ext = None #-----< T-mesh >-----# T_mesh = SEQ(name=u'T-mesh', mode=MODE_TYPE) _T_mesh_number_of_points = INT(name=u'number-of-points', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _T_mesh_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _T_mesh_swap = SEQ_OF(name=u'swap', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __T_mesh_swap__item_ = BOOL(name='_item_', mode=MODE_TYPE) _T_mesh_swap._cont = __T_mesh_swap__item_ _T_mesh_x = SEQ_OF(name=u'x', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __T_mesh_x__item_ = INT(name='_item_', mode=MODE_TYPE) _T_mesh_x._cont = __T_mesh_x__item_ _T_mesh_y = SEQ_OF(name=u'y', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __T_mesh_y__item_ = INT(name='_item_', mode=MODE_TYPE) _T_mesh_y._cont = __T_mesh_y__item_ _T_mesh_z = SEQ_OF(name=u'z', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __T_mesh_z__item_ = INT(name='_item_', mode=MODE_TYPE) _T_mesh_z._cont = __T_mesh_z__item_ T_mesh._cont = ASN1Dict([ (u'number-of-points', _T_mesh_number_of_points), (u'scale-factor', _T_mesh_scale_factor), (u'swap', _T_mesh_swap), (u'x', _T_mesh_x), (u'y', _T_mesh_y), (u'z', _T_mesh_z), ]) T_mesh._ext = None #-----< Triangles >-----# Triangles = SEQ(name=u'Triangles', mode=MODE_TYPE) _Triangles_number_of_points = INT(name=u'number-of-points', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Triangles_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Triangles_x = SEQ_OF(name=u'x', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Triangles_x__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangles_x._cont = __Triangles_x__item_ _Triangles_y = SEQ_OF(name=u'y', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Triangles_y__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangles_y._cont = __Triangles_y__item_ _Triangles_z = SEQ_OF(name=u'z', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Triangles_z__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangles_z._cont = __Triangles_z__item_ _Triangles_number_of_triangles = INT(name=u'number-of-triangles', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Triangles_v1 = SEQ_OF(name=u'v1', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Triangles_v1__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangles_v1._cont = __Triangles_v1__item_ _Triangles_v2 = SEQ_OF(name=u'v2', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Triangles_v2__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangles_v2._cont = __Triangles_v2__item_ _Triangles_v3 = SEQ_OF(name=u'v3', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Triangles_v3__item_ = INT(name='_item_', mode=MODE_TYPE) _Triangles_v3._cont = __Triangles_v3__item_ Triangles._cont = ASN1Dict([ (u'number-of-points', _Triangles_number_of_points), (u'scale-factor', _Triangles_scale_factor), (u'x', _Triangles_x), (u'y', _Triangles_y), (u'z', _Triangles_z), (u'number-of-triangles', _Triangles_number_of_triangles), (u'v1', _Triangles_v1), (u'v2', _Triangles_v2), (u'v3', _Triangles_v3), ]) Triangles._ext = None #-----< Density-coordinates >-----# Density_coordinates = SEQ(name=u'Density-coordinates', mode=MODE_TYPE) _Density_coordinates_contents = CHOICE(name=u'contents', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) _Density_coordinates_grid_corners = SEQ(name=u'grid-corners', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Brick'))) _Density_coordinates_grid_steps_x = INT(name=u'grid-steps-x', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Density_coordinates_grid_steps_y = INT(name=u'grid-steps-y', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Density_coordinates_grid_steps_z = INT(name=u'grid-steps-z', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Density_coordinates_fastest_varying = ENUM(name=u'fastest-varying', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Density_coordinates_fastest_varying._cont = ASN1Dict([(u'x', 1), (u'y', 2), (u'z', 3)]) _Density_coordinates_fastest_varying._ext = None _Density_coordinates_slowest_varying = ENUM(name=u'slowest-varying', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Density_coordinates_slowest_varying._cont = ASN1Dict([(u'x', 1), (u'y', 2), (u'z', 3)]) _Density_coordinates_slowest_varying._ext = None _Density_coordinates_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Density_coordinates_density = SEQ_OF(name=u'density', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Density_coordinates_density__item_ = INT(name='_item_', mode=MODE_TYPE) _Density_coordinates_density._cont = __Density_coordinates_density__item_ Density_coordinates._cont = ASN1Dict([ (u'contents', _Density_coordinates_contents), (u'grid-corners', _Density_coordinates_grid_corners), (u'grid-steps-x', _Density_coordinates_grid_steps_x), (u'grid-steps-y', _Density_coordinates_grid_steps_y), (u'grid-steps-z', _Density_coordinates_grid_steps_z), (u'fastest-varying', _Density_coordinates_fastest_varying), (u'slowest-varying', _Density_coordinates_slowest_varying), (u'scale-factor', _Density_coordinates_scale_factor), (u'density', _Density_coordinates_density), ]) Density_coordinates._ext = None _all_ = [ _Biostruc_model_id, _Biostruc_model_type, __Biostruc_model_descr__item_, _Biostruc_model_descr, _Biostruc_model_model_space, __Biostruc_model_model_coordinates__item_, _Biostruc_model_model_coordinates, Biostruc_model, Model_id, Model_type, _Model_descr_name, _Model_descr_pdb_reso, _Model_descr_pdb_method, _Model_descr_pdb_comment, _Model_descr_other_comment, _Model_descr_attribution, Model_descr, _Model_space_coordinate_units, _Model_space_thermal_factor_units, _Model_space_occupancy_factor_units, _Model_space_density_units, _Model_space_reference_frame, Model_space, _Reference_frame_biostruc_id, _Reference_frame_rotation_translation, Reference_frame, _Model_coordinate_set_id, __Model_coordinate_set_descr__item_, _Model_coordinate_set_descr, __Model_coordinate_set_coordinates_literal, __Model_coordinate_set_coordinates_reference, _Model_coordinate_set_coordinates, Model_coordinate_set, Model_coordinate_set_id, _Coordinates_atomic, _Coordinates_surface, _Coordinates_density, Coordinates, _Atomic_coordinates_number_of_points, _Atomic_coordinates_atoms, _Atomic_coordinates_sites, _Atomic_coordinates_temperature_factors, _Atomic_coordinates_occupancies, _Atomic_coordinates_alternate_conf_ids, __Atomic_coordinates_conf_ensembles__item_, _Atomic_coordinates_conf_ensembles, Atomic_coordinates, _Model_space_points_scale_factor, __Model_space_points_x__item_, _Model_space_points_x, __Model_space_points_y__item_, _Model_space_points_y, __Model_space_points_z__item_, _Model_space_points_z, Model_space_points, _Atomic_temperature_factors_isotropic, _Atomic_temperature_factors_anisotropic, Atomic_temperature_factors, _Isotropic_temperature_factors_scale_factor, __Isotropic_temperature_factors_b__item_, _Isotropic_temperature_factors_b, Isotropic_temperature_factors, _Anisotropic_temperature_factors_scale_factor, __Anisotropic_temperature_factors_b_11__item_, _Anisotropic_temperature_factors_b_11, __Anisotropic_temperature_factors_b_12__item_, _Anisotropic_temperature_factors_b_12, __Anisotropic_temperature_factors_b_13__item_, _Anisotropic_temperature_factors_b_13, __Anisotropic_temperature_factors_b_22__item_, _Anisotropic_temperature_factors_b_22, __Anisotropic_temperature_factors_b_23__item_, _Anisotropic_temperature_factors_b_23, __Anisotropic_temperature_factors_b_33__item_, _Anisotropic_temperature_factors_b_33, Anisotropic_temperature_factors, _Atomic_occupancies_scale_factor, __Atomic_occupancies_o__item_, _Atomic_occupancies_o, Atomic_occupancies, _Alternate_conformation_ids__item_, Alternate_conformation_ids, Alternate_conformation_id, _Conformation_ensemble_name, __Conformation_ensemble_alt_conf_ids__item_, _Conformation_ensemble_alt_conf_ids, Conformation_ensemble, _Surface_coordinates_contents, __Surface_coordinates_surface_sphere, __Surface_coordinates_surface_cone, __Surface_coordinates_surface_cylinder, __Surface_coordinates_surface_brick, __Surface_coordinates_surface_tmesh, __Surface_coordinates_surface_triangles, _Surface_coordinates_surface, Surface_coordinates, _T_mesh_number_of_points, _T_mesh_scale_factor, __T_mesh_swap__item_, _T_mesh_swap, __T_mesh_x__item_, _T_mesh_x, __T_mesh_y__item_, _T_mesh_y, __T_mesh_z__item_, _T_mesh_z, T_mesh, _Triangles_number_of_points, _Triangles_scale_factor, __Triangles_x__item_, _Triangles_x, __Triangles_y__item_, _Triangles_y, __Triangles_z__item_, _Triangles_z, _Triangles_number_of_triangles, __Triangles_v1__item_, _Triangles_v1, __Triangles_v2__item_, _Triangles_v2, __Triangles_v3__item_, _Triangles_v3, Triangles, _Density_coordinates_contents, _Density_coordinates_grid_corners, _Density_coordinates_grid_steps_x, _Density_coordinates_grid_steps_y, _Density_coordinates_grid_steps_z, _Density_coordinates_fastest_varying, _Density_coordinates_slowest_varying, _Density_coordinates_scale_factor, __Density_coordinates_density__item_, _Density_coordinates_density, Density_coordinates, ] class MMDB_Features: _name_ = u'MMDB-Features' _oid_ = [] _obj_ = [ u'Biostruc-feature-set', u'Biostruc-feature-set-id', u'Biostruc-feature-set-descr', u'Biostruc-feature', u'Other-feature', u'Biostruc-feature-id', u'Biostruc-molecule-pntr', u'Chem-graph-pntrs', u'Atom-pntrs', u'Residue-pntrs', u'Residue-explicit-pntrs', u'Residue-interval-pntr', u'Molecule-pntrs', u'Region-pntrs', u'Region-coordinates', u'Region-boundary', u'Chem-graph-alignment', u'Chem-graph-interaction', u'Align-stats', u'Region-similarity', u'Sphere', u'Cone', u'Cylinder', u'Brick', u'Model-space-point', u'RealValue', u'Transform', u'Move', u'Rot-matrix', u'Trans-matrix', u'Camera', u'GL-matrix', u'Color-prop', u'Render-prop', u'Biostruc-script', u'Biostruc-script-step', u'Step-id', ] _type_ = [ u'Biostruc-feature-set', u'Biostruc-feature-set-id', u'Biostruc-feature-set-descr', u'Biostruc-feature', u'Other-feature', u'Biostruc-feature-id', u'Biostruc-molecule-pntr', u'Chem-graph-pntrs', u'Atom-pntrs', u'Residue-pntrs', u'Residue-explicit-pntrs', u'Residue-interval-pntr', u'Molecule-pntrs', u'Region-pntrs', u'Region-coordinates', u'Region-boundary', u'Chem-graph-alignment', u'Chem-graph-interaction', u'Align-stats', u'Region-similarity', u'Sphere', u'Cone', u'Cylinder', u'Brick', u'Model-space-point', u'RealValue', u'Transform', u'Move', u'Rot-matrix', u'Trans-matrix', u'Camera', u'GL-matrix', u'Color-prop', u'Render-prop', u'Biostruc-script', u'Biostruc-script-step', u'Step-id', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Biostruc-feature-set >-----# Biostruc_feature_set = SEQ(name=u'Biostruc-feature-set', mode=MODE_TYPE) _Biostruc_feature_set_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-set-id'))) _Biostruc_feature_set_descr = SEQ_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_feature_set_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-set-descr'))) _Biostruc_feature_set_descr._cont = __Biostruc_feature_set_descr__item_ _Biostruc_feature_set_features = SEQ_OF(name=u'features', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_feature_set_features__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature'))) _Biostruc_feature_set_features._cont = __Biostruc_feature_set_features__item_ Biostruc_feature_set._cont = ASN1Dict([ (u'id', _Biostruc_feature_set_id), (u'descr', _Biostruc_feature_set_descr), (u'features', _Biostruc_feature_set_features), ]) Biostruc_feature_set._ext = None #-----< Biostruc-feature-set-id >-----# Biostruc_feature_set_id = INT(name=u'Biostruc-feature-set-id', mode=MODE_TYPE) #-----< Biostruc-feature-set-descr >-----# Biostruc_feature_set_descr = CHOICE(name=u'Biostruc-feature-set-descr', mode=MODE_TYPE) _Biostruc_feature_set_descr_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_feature_set_descr_pdb_comment = STR_VIS(name=u'pdb-comment', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_feature_set_descr_other_comment = STR_VIS(name=u'other-comment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_feature_set_descr_attribution = CHOICE(name=u'attribution', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) Biostruc_feature_set_descr._cont = ASN1Dict([ (u'name', _Biostruc_feature_set_descr_name), (u'pdb-comment', _Biostruc_feature_set_descr_pdb_comment), (u'other-comment', _Biostruc_feature_set_descr_other_comment), (u'attribution', _Biostruc_feature_set_descr_attribution), ]) Biostruc_feature_set_descr._ext = None #-----< Biostruc-feature >-----# Biostruc_feature = SEQ(name=u'Biostruc-feature', mode=MODE_TYPE) _Biostruc_feature_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-id')), opt=True) _Biostruc_feature_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Biostruc_feature_type = INT(name=u'type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Biostruc_feature_type._cont = ASN1Dict([(u'helix', 1), (u'strand', 2), (u'sheet', 3), (u'turn', 4), (u'site', 5), (u'footnote', 6), (u'comment', 7), (u'interaction', 8), (u'subgraph', 100), (u'region', 101), (u'core', 102), (u'supercore', 103), (u'color', 150), (u'render', 151), (u'label', 152), (u'transform', 153), (u'camera', 154), (u'script', 155), (u'alignment', 200), (u'similarity', 201), (u'multalign', 202), (u'indirect', 203), (u'cn3dstate', 254), (u'other', 255)]) _Biostruc_feature_property = CHOICE(name=u'property', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __Biostruc_feature_property_color = SEQ(name=u'color', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Color-prop'))) __Biostruc_feature_property_render = INT(name=u'render', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Render-prop'))) __Biostruc_feature_property_transform = SEQ(name=u'transform', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Transform'))) __Biostruc_feature_property_camera = SEQ(name=u'camera', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Camera'))) __Biostruc_feature_property_script = SEQ_OF(name=u'script', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Biostruc-script'))) __Biostruc_feature_property_user = SEQ(name=u'user', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object'))) _Biostruc_feature_property._cont = ASN1Dict([ (u'color', __Biostruc_feature_property_color), (u'render', __Biostruc_feature_property_render), (u'transform', __Biostruc_feature_property_transform), (u'camera', __Biostruc_feature_property_camera), (u'script', __Biostruc_feature_property_script), (u'user', __Biostruc_feature_property_user), ]) _Biostruc_feature_property._ext = None _Biostruc_feature_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __Biostruc_feature_location_subgraph = CHOICE(name=u'subgraph', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) __Biostruc_feature_location_region = SEQ(name=u'region', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Region-pntrs'))) __Biostruc_feature_location_alignment = SEQ(name=u'alignment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-alignment'))) __Biostruc_feature_location_interaction = SEQ(name=u'interaction', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-interaction'))) __Biostruc_feature_location_similarity = SEQ(name=u'similarity', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Region-similarity'))) __Biostruc_feature_location_indirect = SEQ(name=u'indirect', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Other-feature'))) _Biostruc_feature_location._cont = ASN1Dict([ (u'subgraph', __Biostruc_feature_location_subgraph), (u'region', __Biostruc_feature_location_region), (u'alignment', __Biostruc_feature_location_alignment), (u'interaction', __Biostruc_feature_location_interaction), (u'similarity', __Biostruc_feature_location_similarity), (u'indirect', __Biostruc_feature_location_indirect), ]) _Biostruc_feature_location._ext = None Biostruc_feature._cont = ASN1Dict([ (u'id', _Biostruc_feature_id), (u'name', _Biostruc_feature_name), (u'type', _Biostruc_feature_type), (u'property', _Biostruc_feature_property), (u'location', _Biostruc_feature_location), ]) Biostruc_feature._ext = None #-----< Other-feature >-----# Other_feature = SEQ(name=u'Other-feature', mode=MODE_TYPE) _Other_feature_biostruc_id = CHOICE(name=u'biostruc-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Other_feature_set = INT(name=u'set', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-set-id'))) _Other_feature_feature = INT(name=u'feature', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Biostruc-feature-id'))) Other_feature._cont = ASN1Dict([ (u'biostruc-id', _Other_feature_biostruc_id), (u'set', _Other_feature_set), (u'feature', _Other_feature_feature), ]) Other_feature._ext = None #-----< Biostruc-feature-id >-----# Biostruc_feature_id = INT(name=u'Biostruc-feature-id', mode=MODE_TYPE) #-----< Biostruc-molecule-pntr >-----# Biostruc_molecule_pntr = SEQ(name=u'Biostruc-molecule-pntr', mode=MODE_TYPE) _Biostruc_molecule_pntr_biostruc_id = CHOICE(name=u'biostruc-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Biostruc_molecule_pntr_molecule_id = INT(name=u'molecule-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) Biostruc_molecule_pntr._cont = ASN1Dict([ (u'biostruc-id', _Biostruc_molecule_pntr_biostruc_id), (u'molecule-id', _Biostruc_molecule_pntr_molecule_id), ]) Biostruc_molecule_pntr._ext = None #-----< Chem-graph-pntrs >-----# Chem_graph_pntrs = CHOICE(name=u'Chem-graph-pntrs', mode=MODE_TYPE) _Chem_graph_pntrs_atoms = SEQ(name=u'atoms', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Atom-pntrs'))) _Chem_graph_pntrs_residues = CHOICE(name=u'residues', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Residue-pntrs'))) _Chem_graph_pntrs_molecules = SEQ(name=u'molecules', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Molecule-pntrs'))) Chem_graph_pntrs._cont = ASN1Dict([ (u'atoms', _Chem_graph_pntrs_atoms), (u'residues', _Chem_graph_pntrs_residues), (u'molecules', _Chem_graph_pntrs_molecules), ]) Chem_graph_pntrs._ext = None #-----< Atom-pntrs >-----# Atom_pntrs = SEQ(name=u'Atom-pntrs', mode=MODE_TYPE) _Atom_pntrs_number_of_ptrs = INT(name=u'number-of-ptrs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Atom_pntrs_molecule_ids = SEQ_OF(name=u'molecule-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Atom_pntrs_molecule_ids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Atom_pntrs_molecule_ids._cont = __Atom_pntrs_molecule_ids__item_ _Atom_pntrs_residue_ids = SEQ_OF(name=u'residue-ids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Atom_pntrs_residue_ids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) _Atom_pntrs_residue_ids._cont = __Atom_pntrs_residue_ids__item_ _Atom_pntrs_atom_ids = SEQ_OF(name=u'atom-ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Atom_pntrs_atom_ids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Atom-id'))) _Atom_pntrs_atom_ids._cont = __Atom_pntrs_atom_ids__item_ Atom_pntrs._cont = ASN1Dict([ (u'number-of-ptrs', _Atom_pntrs_number_of_ptrs), (u'molecule-ids', _Atom_pntrs_molecule_ids), (u'residue-ids', _Atom_pntrs_residue_ids), (u'atom-ids', _Atom_pntrs_atom_ids), ]) Atom_pntrs._ext = None #-----< Residue-pntrs >-----# Residue_pntrs = CHOICE(name=u'Residue-pntrs', mode=MODE_TYPE) _Residue_pntrs_explicit = SEQ(name=u'explicit', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Residue-explicit-pntrs'))) _Residue_pntrs_interval = SEQ_OF(name=u'interval', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Residue_pntrs_interval__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Residue-interval-pntr'))) _Residue_pntrs_interval._cont = __Residue_pntrs_interval__item_ Residue_pntrs._cont = ASN1Dict([ (u'explicit', _Residue_pntrs_explicit), (u'interval', _Residue_pntrs_interval), ]) Residue_pntrs._ext = None #-----< Residue-explicit-pntrs >-----# Residue_explicit_pntrs = SEQ(name=u'Residue-explicit-pntrs', mode=MODE_TYPE) _Residue_explicit_pntrs_number_of_ptrs = INT(name=u'number-of-ptrs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Residue_explicit_pntrs_molecule_ids = SEQ_OF(name=u'molecule-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Residue_explicit_pntrs_molecule_ids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Residue_explicit_pntrs_molecule_ids._cont = __Residue_explicit_pntrs_molecule_ids__item_ _Residue_explicit_pntrs_residue_ids = SEQ_OF(name=u'residue-ids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Residue_explicit_pntrs_residue_ids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) _Residue_explicit_pntrs_residue_ids._cont = __Residue_explicit_pntrs_residue_ids__item_ Residue_explicit_pntrs._cont = ASN1Dict([ (u'number-of-ptrs', _Residue_explicit_pntrs_number_of_ptrs), (u'molecule-ids', _Residue_explicit_pntrs_molecule_ids), (u'residue-ids', _Residue_explicit_pntrs_residue_ids), ]) Residue_explicit_pntrs._ext = None #-----< Residue-interval-pntr >-----# Residue_interval_pntr = SEQ(name=u'Residue-interval-pntr', mode=MODE_TYPE) _Residue_interval_pntr_molecule_id = INT(name=u'molecule-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Residue_interval_pntr_from_ = INT(name=u'from', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) _Residue_interval_pntr_to = INT(name=u'to', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Chemical-graph', 'Residue-id'))) Residue_interval_pntr._cont = ASN1Dict([ (u'molecule-id', _Residue_interval_pntr_molecule_id), (u'from', _Residue_interval_pntr_from_), (u'to', _Residue_interval_pntr_to), ]) Residue_interval_pntr._ext = None #-----< Molecule-pntrs >-----# Molecule_pntrs = SEQ(name=u'Molecule-pntrs', mode=MODE_TYPE) _Molecule_pntrs_number_of_ptrs = INT(name=u'number-of-ptrs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Molecule_pntrs_molecule_ids = SEQ_OF(name=u'molecule-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Molecule_pntrs_molecule_ids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Chemical-graph', 'Molecule-id'))) _Molecule_pntrs_molecule_ids._cont = __Molecule_pntrs_molecule_ids__item_ Molecule_pntrs._cont = ASN1Dict([ (u'number-of-ptrs', _Molecule_pntrs_number_of_ptrs), (u'molecule-ids', _Molecule_pntrs_molecule_ids), ]) Molecule_pntrs._ext = None #-----< Region-pntrs >-----# Region_pntrs = SEQ(name=u'Region-pntrs', mode=MODE_TYPE) _Region_pntrs_model_id = INT(name=u'model-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-id'))) _Region_pntrs_region = CHOICE(name=u'region', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Region_pntrs_region_site = SEQ_OF(name=u'site', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Region_pntrs_region_site__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Region-coordinates'))) __Region_pntrs_region_site._cont = ___Region_pntrs_region_site__item_ __Region_pntrs_region_boundary = SEQ_OF(name=u'boundary', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Region_pntrs_region_boundary__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Region-boundary'))) __Region_pntrs_region_boundary._cont = ___Region_pntrs_region_boundary__item_ _Region_pntrs_region._cont = ASN1Dict([ (u'site', __Region_pntrs_region_site), (u'boundary', __Region_pntrs_region_boundary), ]) _Region_pntrs_region._ext = None Region_pntrs._cont = ASN1Dict([ (u'model-id', _Region_pntrs_model_id), (u'region', _Region_pntrs_region), ]) Region_pntrs._ext = None #-----< Region-coordinates >-----# Region_coordinates = SEQ(name=u'Region-coordinates', mode=MODE_TYPE) _Region_coordinates_model_coord_set_id = INT(name=u'model-coord-set-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Structural-model', 'Model-coordinate-set-id'))) _Region_coordinates_number_of_coords = INT(name=u'number-of-coords', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Region_coordinates_coordinate_indices = SEQ_OF(name=u'coordinate-indices', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Region_coordinates_coordinate_indices__item_ = INT(name='_item_', mode=MODE_TYPE) _Region_coordinates_coordinate_indices._cont = __Region_coordinates_coordinate_indices__item_ Region_coordinates._cont = ASN1Dict([ (u'model-coord-set-id', _Region_coordinates_model_coord_set_id), (u'number-of-coords', _Region_coordinates_number_of_coords), (u'coordinate-indices', _Region_coordinates_coordinate_indices), ]) Region_coordinates._ext = None #-----< Region-boundary >-----# Region_boundary = CHOICE(name=u'Region-boundary', mode=MODE_TYPE) _Region_boundary_sphere = SEQ(name=u'sphere', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Sphere'))) _Region_boundary_cone = SEQ(name=u'cone', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Cone'))) _Region_boundary_cylinder = SEQ(name=u'cylinder', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Cylinder'))) _Region_boundary_brick = SEQ(name=u'brick', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Brick'))) Region_boundary._cont = ASN1Dict([ (u'sphere', _Region_boundary_sphere), (u'cone', _Region_boundary_cone), (u'cylinder', _Region_boundary_cylinder), (u'brick', _Region_boundary_brick), ]) Region_boundary._ext = None #-----< Chem-graph-alignment >-----# Chem_graph_alignment = SEQ(name=u'Chem-graph-alignment', mode=MODE_TYPE) _Chem_graph_alignment_dimension = INT(name=u'dimension', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _Chem_graph_alignment_biostruc_ids = SEQ_OF(name=u'biostruc-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Chem_graph_alignment_biostruc_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Chem_graph_alignment_biostruc_ids._cont = __Chem_graph_alignment_biostruc_ids__item_ _Chem_graph_alignment_alignment = SEQ_OF(name=u'alignment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Chem_graph_alignment_alignment__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) _Chem_graph_alignment_alignment._cont = __Chem_graph_alignment_alignment__item_ _Chem_graph_alignment_domain = SEQ_OF(name=u'domain', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Chem_graph_alignment_domain__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) _Chem_graph_alignment_domain._cont = __Chem_graph_alignment_domain__item_ _Chem_graph_alignment_transform = SEQ_OF(name=u'transform', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Chem_graph_alignment_transform__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Transform'))) _Chem_graph_alignment_transform._cont = __Chem_graph_alignment_transform__item_ _Chem_graph_alignment_aligndata = SEQ_OF(name=u'aligndata', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Chem_graph_alignment_aligndata__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Align-stats'))) _Chem_graph_alignment_aligndata._cont = __Chem_graph_alignment_aligndata__item_ Chem_graph_alignment._cont = ASN1Dict([ (u'dimension', _Chem_graph_alignment_dimension), (u'biostruc-ids', _Chem_graph_alignment_biostruc_ids), (u'alignment', _Chem_graph_alignment_alignment), (u'domain', _Chem_graph_alignment_domain), (u'transform', _Chem_graph_alignment_transform), (u'aligndata', _Chem_graph_alignment_aligndata), ]) Chem_graph_alignment._ext = None #-----< Chem-graph-interaction >-----# Chem_graph_interaction = SEQ(name=u'Chem-graph-interaction', mode=MODE_TYPE) _Chem_graph_interaction_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Chem_graph_interaction_type._cont = ASN1Dict([(u'protein-protein', 1), (u'protein-dna', 2), (u'protein-rna', 3), (u'protein-chemical', 4), (u'dna-dna', 5), (u'dna-rna', 6), (u'dna-chemical', 7), (u'rna-rna', 8), (u'rna-chemical', 9), (u'other', 255)]) _Chem_graph_interaction_distance_threshold = SEQ(name=u'distance-threshold', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'RealValue')), opt=True) _Chem_graph_interaction_interactors = SEQ_OF(name=u'interactors', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Chem_graph_interaction_interactors__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Biostruc-molecule-pntr'))) _Chem_graph_interaction_interactors._cont = __Chem_graph_interaction_interactors__item_ _Chem_graph_interaction_residue_contacts = SEQ_OF(name=u'residue-contacts', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Chem_graph_interaction_residue_contacts__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) _Chem_graph_interaction_residue_contacts._cont = __Chem_graph_interaction_residue_contacts__item_ _Chem_graph_interaction_atom_contacts = SEQ_OF(name=u'atom-contacts', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Chem_graph_interaction_atom_contacts__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Chem-graph-pntrs'))) _Chem_graph_interaction_atom_contacts._cont = __Chem_graph_interaction_atom_contacts__item_ _Chem_graph_interaction_atom_distance = SEQ_OF(name=u'atom-distance', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Chem_graph_interaction_atom_distance__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'RealValue'))) _Chem_graph_interaction_atom_distance._cont = __Chem_graph_interaction_atom_distance__item_ Chem_graph_interaction._cont = ASN1Dict([ (u'type', _Chem_graph_interaction_type), (u'distance-threshold', _Chem_graph_interaction_distance_threshold), (u'interactors', _Chem_graph_interaction_interactors), (u'residue-contacts', _Chem_graph_interaction_residue_contacts), (u'atom-contacts', _Chem_graph_interaction_atom_contacts), (u'atom-distance', _Chem_graph_interaction_atom_distance), ]) Chem_graph_interaction._ext = None #-----< Align-stats >-----# Align_stats = SEQ(name=u'Align-stats', mode=MODE_TYPE) _Align_stats_descr = STR_VIS(name=u'descr', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_vast_score = INT(name=u'vast-score', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_vast_mlogp = INT(name=u'vast-mlogp', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_align_res = INT(name=u'align-res', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_rmsd = INT(name=u'rmsd', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_blast_score = INT(name=u'blast-score', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_blast_mlogp = INT(name=u'blast-mlogp', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Align_stats_other_score = INT(name=u'other-score', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Align_stats._cont = ASN1Dict([ (u'descr', _Align_stats_descr), (u'scale-factor', _Align_stats_scale_factor), (u'vast-score', _Align_stats_vast_score), (u'vast-mlogp', _Align_stats_vast_mlogp), (u'align-res', _Align_stats_align_res), (u'rmsd', _Align_stats_rmsd), (u'blast-score', _Align_stats_blast_score), (u'blast-mlogp', _Align_stats_blast_mlogp), (u'other-score', _Align_stats_other_score), ]) Align_stats._ext = None #-----< Region-similarity >-----# Region_similarity = SEQ(name=u'Region-similarity', mode=MODE_TYPE) _Region_similarity_dimension = INT(name=u'dimension', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _Region_similarity_biostruc_ids = SEQ_OF(name=u'biostruc-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Region_similarity_biostruc_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc-id'))) _Region_similarity_biostruc_ids._cont = __Region_similarity_biostruc_ids__item_ _Region_similarity_similarity = SEQ_OF(name=u'similarity', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Region_similarity_similarity__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Region-pntrs'))) _Region_similarity_similarity._cont = __Region_similarity_similarity__item_ _Region_similarity_transform = SEQ_OF(name=u'transform', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Region_similarity_transform__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Transform'))) _Region_similarity_transform._cont = __Region_similarity_transform__item_ Region_similarity._cont = ASN1Dict([ (u'dimension', _Region_similarity_dimension), (u'biostruc-ids', _Region_similarity_biostruc_ids), (u'similarity', _Region_similarity_similarity), (u'transform', _Region_similarity_transform), ]) Region_similarity._ext = None #-----< Sphere >-----# Sphere = SEQ(name=u'Sphere', mode=MODE_TYPE) _Sphere_center = SEQ(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Sphere_radius = SEQ(name=u'radius', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'RealValue'))) Sphere._cont = ASN1Dict([ (u'center', _Sphere_center), (u'radius', _Sphere_radius), ]) Sphere._ext = None #-----< Cone >-----# Cone = SEQ(name=u'Cone', mode=MODE_TYPE) _Cone_axis_top = SEQ(name=u'axis-top', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Cone_axis_bottom = SEQ(name=u'axis-bottom', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Cone_radius_bottom = SEQ(name=u'radius-bottom', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'RealValue'))) Cone._cont = ASN1Dict([ (u'axis-top', _Cone_axis_top), (u'axis-bottom', _Cone_axis_bottom), (u'radius-bottom', _Cone_radius_bottom), ]) Cone._ext = None #-----< Cylinder >-----# Cylinder = SEQ(name=u'Cylinder', mode=MODE_TYPE) _Cylinder_axis_top = SEQ(name=u'axis-top', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Cylinder_axis_bottom = SEQ(name=u'axis-bottom', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Cylinder_radius = SEQ(name=u'radius', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'RealValue'))) Cylinder._cont = ASN1Dict([ (u'axis-top', _Cylinder_axis_top), (u'axis-bottom', _Cylinder_axis_bottom), (u'radius', _Cylinder_radius), ]) Cylinder._ext = None #-----< Brick >-----# Brick = SEQ(name=u'Brick', mode=MODE_TYPE) _Brick_corner_000 = SEQ(name=u'corner-000', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_001 = SEQ(name=u'corner-001', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_010 = SEQ(name=u'corner-010', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_011 = SEQ(name=u'corner-011', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_100 = SEQ(name=u'corner-100', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_101 = SEQ(name=u'corner-101', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_110 = SEQ(name=u'corner-110', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) _Brick_corner_111 = SEQ(name=u'corner-111', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Model-space-point'))) Brick._cont = ASN1Dict([ (u'corner-000', _Brick_corner_000), (u'corner-001', _Brick_corner_001), (u'corner-010', _Brick_corner_010), (u'corner-011', _Brick_corner_011), (u'corner-100', _Brick_corner_100), (u'corner-101', _Brick_corner_101), (u'corner-110', _Brick_corner_110), (u'corner-111', _Brick_corner_111), ]) Brick._ext = None #-----< Model-space-point >-----# Model_space_point = SEQ(name=u'Model-space-point', mode=MODE_TYPE) _Model_space_point_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_space_point_x = INT(name=u'x', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_space_point_y = INT(name=u'y', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Model_space_point_z = INT(name=u'z', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Model_space_point._cont = ASN1Dict([ (u'scale-factor', _Model_space_point_scale_factor), (u'x', _Model_space_point_x), (u'y', _Model_space_point_y), (u'z', _Model_space_point_z), ]) Model_space_point._ext = None #-----< RealValue >-----# RealValue = SEQ(name=u'RealValue', mode=MODE_TYPE) _RealValue_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RealValue_scaled_integer_value = INT(name=u'scaled-integer-value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) RealValue._cont = ASN1Dict([ (u'scale-factor', _RealValue_scale_factor), (u'scaled-integer-value', _RealValue_scaled_integer_value), ]) RealValue._ext = None #-----< Transform >-----# Transform = SEQ(name=u'Transform', mode=MODE_TYPE) _Transform_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Transform_moves = SEQ_OF(name=u'moves', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Transform_moves__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Move'))) _Transform_moves._cont = __Transform_moves__item_ Transform._cont = ASN1Dict([ (u'id', _Transform_id), (u'moves', _Transform_moves), ]) Transform._ext = None #-----< Move >-----# Move = CHOICE(name=u'Move', mode=MODE_TYPE) _Move_rotate = SEQ(name=u'rotate', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Rot-matrix'))) _Move_translate = SEQ(name=u'translate', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Trans-matrix'))) Move._cont = ASN1Dict([ (u'rotate', _Move_rotate), (u'translate', _Move_translate), ]) Move._ext = None #-----< Rot-matrix >-----# Rot_matrix = SEQ(name=u'Rot-matrix', mode=MODE_TYPE) _Rot_matrix_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_11 = INT(name=u'rot-11', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_12 = INT(name=u'rot-12', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_13 = INT(name=u'rot-13', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_21 = INT(name=u'rot-21', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_22 = INT(name=u'rot-22', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_23 = INT(name=u'rot-23', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_31 = INT(name=u'rot-31', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_32 = INT(name=u'rot-32', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rot_matrix_rot_33 = INT(name=u'rot-33', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Rot_matrix._cont = ASN1Dict([ (u'scale-factor', _Rot_matrix_scale_factor), (u'rot-11', _Rot_matrix_rot_11), (u'rot-12', _Rot_matrix_rot_12), (u'rot-13', _Rot_matrix_rot_13), (u'rot-21', _Rot_matrix_rot_21), (u'rot-22', _Rot_matrix_rot_22), (u'rot-23', _Rot_matrix_rot_23), (u'rot-31', _Rot_matrix_rot_31), (u'rot-32', _Rot_matrix_rot_32), (u'rot-33', _Rot_matrix_rot_33), ]) Rot_matrix._ext = None #-----< Trans-matrix >-----# Trans_matrix = SEQ(name=u'Trans-matrix', mode=MODE_TYPE) _Trans_matrix_scale_factor = INT(name=u'scale-factor', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Trans_matrix_tran_1 = INT(name=u'tran-1', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Trans_matrix_tran_2 = INT(name=u'tran-2', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Trans_matrix_tran_3 = INT(name=u'tran-3', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Trans_matrix._cont = ASN1Dict([ (u'scale-factor', _Trans_matrix_scale_factor), (u'tran-1', _Trans_matrix_tran_1), (u'tran-2', _Trans_matrix_tran_2), (u'tran-3', _Trans_matrix_tran_3), ]) Trans_matrix._ext = None #-----< Camera >-----# Camera = SEQ(name=u'Camera', mode=MODE_TYPE) _Camera_x = INT(name=u'x', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Camera_y = INT(name=u'y', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Camera_distance = INT(name=u'distance', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Camera_angle = INT(name=u'angle', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Camera_scale = INT(name=u'scale', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Camera_modelview = SEQ(name=u'modelview', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'GL-matrix'))) Camera._cont = ASN1Dict([ (u'x', _Camera_x), (u'y', _Camera_y), (u'distance', _Camera_distance), (u'angle', _Camera_angle), (u'scale', _Camera_scale), (u'modelview', _Camera_modelview), ]) Camera._ext = None #-----< GL-matrix >-----# GL_matrix = SEQ(name=u'GL-matrix', mode=MODE_TYPE) _GL_matrix_scale = INT(name=u'scale', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m11 = INT(name=u'm11', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m12 = INT(name=u'm12', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m13 = INT(name=u'm13', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m14 = INT(name=u'm14', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m21 = INT(name=u'm21', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m22 = INT(name=u'm22', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m23 = INT(name=u'm23', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m24 = INT(name=u'm24', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m31 = INT(name=u'm31', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m32 = INT(name=u'm32', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m33 = INT(name=u'm33', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m34 = INT(name=u'm34', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m41 = INT(name=u'm41', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m42 = INT(name=u'm42', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m43 = INT(name=u'm43', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _GL_matrix_m44 = INT(name=u'm44', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) GL_matrix._cont = ASN1Dict([ (u'scale', _GL_matrix_scale), (u'm11', _GL_matrix_m11), (u'm12', _GL_matrix_m12), (u'm13', _GL_matrix_m13), (u'm14', _GL_matrix_m14), (u'm21', _GL_matrix_m21), (u'm22', _GL_matrix_m22), (u'm23', _GL_matrix_m23), (u'm24', _GL_matrix_m24), (u'm31', _GL_matrix_m31), (u'm32', _GL_matrix_m32), (u'm33', _GL_matrix_m33), (u'm34', _GL_matrix_m34), (u'm41', _GL_matrix_m41), (u'm42', _GL_matrix_m42), (u'm43', _GL_matrix_m43), (u'm44', _GL_matrix_m44), ]) GL_matrix._ext = None #-----< Color-prop >-----# Color_prop = SEQ(name=u'Color-prop', mode=MODE_TYPE) _Color_prop_r = INT(name=u'r', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Color_prop_g = INT(name=u'g', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Color_prop_b = INT(name=u'b', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Color_prop_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Color_prop._cont = ASN1Dict([ (u'r', _Color_prop_r), (u'g', _Color_prop_g), (u'b', _Color_prop_b), (u'name', _Color_prop_name), ]) Color_prop._ext = None #-----< Render-prop >-----# Render_prop = INT(name=u'Render-prop', mode=MODE_TYPE) Render_prop._cont = ASN1Dict([(u'default', 0), (u'wire', 1), (u'space', 2), (u'stick', 3), (u'ballNStick', 4), (u'thickWire', 5), (u'hide', 9), (u'name', 10), (u'number', 11), (u'pdbNumber', 12), (u'objWireFrame', 150), (u'objPolygons', 151), (u'colorsetCPK', 225), (u'colorsetbyChain', 226), (u'colorsetbyTemp', 227), (u'colorsetbyRes', 228), (u'colorsetbyLen', 229), (u'colorsetbySStru', 230), (u'colorsetbyHydro', 231), (u'colorsetbyObject', 246), (u'colorsetbyDomain', 247), (u'other', 255)]) #-----< Biostruc-script >-----# Biostruc_script = SEQ_OF(name=u'Biostruc-script', mode=MODE_TYPE) _Biostruc_script__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Biostruc-script-step'))) Biostruc_script._cont = _Biostruc_script__item_ #-----< Biostruc-script-step >-----# Biostruc_script_step = SEQ(name=u'Biostruc-script-step', mode=MODE_TYPE) _Biostruc_script_step_step_id = INT(name=u'step-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Step-id'))) _Biostruc_script_step_step_name = STR_VIS(name=u'step-name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Biostruc_script_step_feature_do = SEQ_OF(name=u'feature-do', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_script_step_feature_do__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB-Features', 'Other-feature'))) _Biostruc_script_step_feature_do._cont = __Biostruc_script_step_feature_do__item_ _Biostruc_script_step_camera_move = SEQ(name=u'camera-move', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Transform')), opt=True) _Biostruc_script_step_pause = INT(name=u'pause', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=10) _Biostruc_script_step_waitevent = BOOL(name=u'waitevent', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_script_step_extra = INT(name=u'extra', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Biostruc_script_step_jump = INT(name=u'jump', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB-Features', 'Step-id')), opt=True) Biostruc_script_step._cont = ASN1Dict([ (u'step-id', _Biostruc_script_step_step_id), (u'step-name', _Biostruc_script_step_step_name), (u'feature-do', _Biostruc_script_step_feature_do), (u'camera-move', _Biostruc_script_step_camera_move), (u'pause', _Biostruc_script_step_pause), (u'waitevent', _Biostruc_script_step_waitevent), (u'extra', _Biostruc_script_step_extra), (u'jump', _Biostruc_script_step_jump), ]) Biostruc_script_step._ext = None #-----< Step-id >-----# Step_id = INT(name=u'Step-id', mode=MODE_TYPE) _all_ = [ _Biostruc_feature_set_id, __Biostruc_feature_set_descr__item_, _Biostruc_feature_set_descr, __Biostruc_feature_set_features__item_, _Biostruc_feature_set_features, Biostruc_feature_set, Biostruc_feature_set_id, _Biostruc_feature_set_descr_name, _Biostruc_feature_set_descr_pdb_comment, _Biostruc_feature_set_descr_other_comment, _Biostruc_feature_set_descr_attribution, Biostruc_feature_set_descr, _Biostruc_feature_id, _Biostruc_feature_name, _Biostruc_feature_type, __Biostruc_feature_property_color, __Biostruc_feature_property_render, __Biostruc_feature_property_transform, __Biostruc_feature_property_camera, __Biostruc_feature_property_script, __Biostruc_feature_property_user, _Biostruc_feature_property, __Biostruc_feature_location_subgraph, __Biostruc_feature_location_region, __Biostruc_feature_location_alignment, __Biostruc_feature_location_interaction, __Biostruc_feature_location_similarity, __Biostruc_feature_location_indirect, _Biostruc_feature_location, Biostruc_feature, _Other_feature_biostruc_id, _Other_feature_set, _Other_feature_feature, Other_feature, Biostruc_feature_id, _Biostruc_molecule_pntr_biostruc_id, _Biostruc_molecule_pntr_molecule_id, Biostruc_molecule_pntr, _Chem_graph_pntrs_atoms, _Chem_graph_pntrs_residues, _Chem_graph_pntrs_molecules, Chem_graph_pntrs, _Atom_pntrs_number_of_ptrs, __Atom_pntrs_molecule_ids__item_, _Atom_pntrs_molecule_ids, __Atom_pntrs_residue_ids__item_, _Atom_pntrs_residue_ids, __Atom_pntrs_atom_ids__item_, _Atom_pntrs_atom_ids, Atom_pntrs, _Residue_pntrs_explicit, __Residue_pntrs_interval__item_, _Residue_pntrs_interval, Residue_pntrs, _Residue_explicit_pntrs_number_of_ptrs, __Residue_explicit_pntrs_molecule_ids__item_, _Residue_explicit_pntrs_molecule_ids, __Residue_explicit_pntrs_residue_ids__item_, _Residue_explicit_pntrs_residue_ids, Residue_explicit_pntrs, _Residue_interval_pntr_molecule_id, _Residue_interval_pntr_from_, _Residue_interval_pntr_to, Residue_interval_pntr, _Molecule_pntrs_number_of_ptrs, __Molecule_pntrs_molecule_ids__item_, _Molecule_pntrs_molecule_ids, Molecule_pntrs, _Region_pntrs_model_id, ___Region_pntrs_region_site__item_, __Region_pntrs_region_site, ___Region_pntrs_region_boundary__item_, __Region_pntrs_region_boundary, _Region_pntrs_region, Region_pntrs, _Region_coordinates_model_coord_set_id, _Region_coordinates_number_of_coords, __Region_coordinates_coordinate_indices__item_, _Region_coordinates_coordinate_indices, Region_coordinates, _Region_boundary_sphere, _Region_boundary_cone, _Region_boundary_cylinder, _Region_boundary_brick, Region_boundary, _Chem_graph_alignment_dimension, __Chem_graph_alignment_biostruc_ids__item_, _Chem_graph_alignment_biostruc_ids, __Chem_graph_alignment_alignment__item_, _Chem_graph_alignment_alignment, __Chem_graph_alignment_domain__item_, _Chem_graph_alignment_domain, __Chem_graph_alignment_transform__item_, _Chem_graph_alignment_transform, __Chem_graph_alignment_aligndata__item_, _Chem_graph_alignment_aligndata, Chem_graph_alignment, _Chem_graph_interaction_type, _Chem_graph_interaction_distance_threshold, __Chem_graph_interaction_interactors__item_, _Chem_graph_interaction_interactors, __Chem_graph_interaction_residue_contacts__item_, _Chem_graph_interaction_residue_contacts, __Chem_graph_interaction_atom_contacts__item_, _Chem_graph_interaction_atom_contacts, __Chem_graph_interaction_atom_distance__item_, _Chem_graph_interaction_atom_distance, Chem_graph_interaction, _Align_stats_descr, _Align_stats_scale_factor, _Align_stats_vast_score, _Align_stats_vast_mlogp, _Align_stats_align_res, _Align_stats_rmsd, _Align_stats_blast_score, _Align_stats_blast_mlogp, _Align_stats_other_score, Align_stats, _Region_similarity_dimension, __Region_similarity_biostruc_ids__item_, _Region_similarity_biostruc_ids, __Region_similarity_similarity__item_, _Region_similarity_similarity, __Region_similarity_transform__item_, _Region_similarity_transform, Region_similarity, _Sphere_center, _Sphere_radius, Sphere, _Cone_axis_top, _Cone_axis_bottom, _Cone_radius_bottom, Cone, _Cylinder_axis_top, _Cylinder_axis_bottom, _Cylinder_radius, Cylinder, _Brick_corner_000, _Brick_corner_001, _Brick_corner_010, _Brick_corner_011, _Brick_corner_100, _Brick_corner_101, _Brick_corner_110, _Brick_corner_111, Brick, _Model_space_point_scale_factor, _Model_space_point_x, _Model_space_point_y, _Model_space_point_z, Model_space_point, _RealValue_scale_factor, _RealValue_scaled_integer_value, RealValue, _Transform_id, __Transform_moves__item_, _Transform_moves, Transform, _Move_rotate, _Move_translate, Move, _Rot_matrix_scale_factor, _Rot_matrix_rot_11, _Rot_matrix_rot_12, _Rot_matrix_rot_13, _Rot_matrix_rot_21, _Rot_matrix_rot_22, _Rot_matrix_rot_23, _Rot_matrix_rot_31, _Rot_matrix_rot_32, _Rot_matrix_rot_33, Rot_matrix, _Trans_matrix_scale_factor, _Trans_matrix_tran_1, _Trans_matrix_tran_2, _Trans_matrix_tran_3, Trans_matrix, _Camera_x, _Camera_y, _Camera_distance, _Camera_angle, _Camera_scale, _Camera_modelview, Camera, _GL_matrix_scale, _GL_matrix_m11, _GL_matrix_m12, _GL_matrix_m13, _GL_matrix_m14, _GL_matrix_m21, _GL_matrix_m22, _GL_matrix_m23, _GL_matrix_m24, _GL_matrix_m31, _GL_matrix_m32, _GL_matrix_m33, _GL_matrix_m34, _GL_matrix_m41, _GL_matrix_m42, _GL_matrix_m43, _GL_matrix_m44, GL_matrix, _Color_prop_r, _Color_prop_g, _Color_prop_b, _Color_prop_name, Color_prop, Render_prop, _Biostruc_script__item_, Biostruc_script, _Biostruc_script_step_step_id, _Biostruc_script_step_step_name, __Biostruc_script_step_feature_do__item_, _Biostruc_script_step_feature_do, _Biostruc_script_step_camera_move, _Biostruc_script_step_pause, _Biostruc_script_step_waitevent, _Biostruc_script_step_extra, _Biostruc_script_step_jump, Biostruc_script_step, Step_id, ] class NCBI_Mime: _name_ = u'NCBI-Mime' _oid_ = [] _obj_ = [ u'Ncbi-mime-asn1', u'Bundle-seqs-aligns', u'Biostruc-seqs-aligns-cdd', u'Biostruc-align', u'Biostruc-align-seq', u'Biostruc-seq', u'Biostruc-seqs', u'Entrez-style', u'Entrez-general', ] _type_ = [ u'Ncbi-mime-asn1', u'Bundle-seqs-aligns', u'Biostruc-seqs-aligns-cdd', u'Biostruc-align', u'Biostruc-align-seq', u'Biostruc-seq', u'Biostruc-seqs', u'Entrez-style', u'Entrez-general', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Ncbi-mime-asn1 >-----# Ncbi_mime_asn1 = CHOICE(name=u'Ncbi-mime-asn1', mode=MODE_TYPE) _Ncbi_mime_asn1_entrez = SEQ(name=u'entrez', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Entrez-general'))) _Ncbi_mime_asn1_alignstruc = SEQ(name=u'alignstruc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Biostruc-align'))) _Ncbi_mime_asn1_alignseq = SEQ(name=u'alignseq', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Biostruc-align-seq'))) _Ncbi_mime_asn1_strucseq = SEQ(name=u'strucseq', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Biostruc-seq'))) _Ncbi_mime_asn1_strucseqs = SEQ(name=u'strucseqs', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Biostruc-seqs'))) _Ncbi_mime_asn1_general = SEQ(name=u'general', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Biostruc-seqs-aligns-cdd'))) Ncbi_mime_asn1._cont = ASN1Dict([ (u'entrez', _Ncbi_mime_asn1_entrez), (u'alignstruc', _Ncbi_mime_asn1_alignstruc), (u'alignseq', _Ncbi_mime_asn1_alignseq), (u'strucseq', _Ncbi_mime_asn1_strucseq), (u'strucseqs', _Ncbi_mime_asn1_strucseqs), (u'general', _Ncbi_mime_asn1_general), ]) Ncbi_mime_asn1._ext = None #-----< Bundle-seqs-aligns >-----# Bundle_seqs_aligns = SEQ(name=u'Bundle-seqs-aligns', mode=MODE_TYPE) _Bundle_seqs_aligns_sequences = SET_OF(name=u'sequences', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Bundle_seqs_aligns_sequences__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Bundle_seqs_aligns_sequences._cont = __Bundle_seqs_aligns_sequences__item_ _Bundle_seqs_aligns_seqaligns = SET_OF(name=u'seqaligns', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Bundle_seqs_aligns_seqaligns__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Bundle_seqs_aligns_seqaligns._cont = __Bundle_seqs_aligns_seqaligns__item_ _Bundle_seqs_aligns_strucaligns = SEQ(name=u'strucaligns', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-annot-set')), opt=True) _Bundle_seqs_aligns_imports = SET_OF(name=u'imports', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Bundle_seqs_aligns_imports__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Bundle_seqs_aligns_imports._cont = __Bundle_seqs_aligns_imports__item_ _Bundle_seqs_aligns_style_dictionary = SEQ(name=u'style-dictionary', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-dictionary')), opt=True) _Bundle_seqs_aligns_user_annotations = SEQ(name=u'user-annotations', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotations')), opt=True) Bundle_seqs_aligns._cont = ASN1Dict([ (u'sequences', _Bundle_seqs_aligns_sequences), (u'seqaligns', _Bundle_seqs_aligns_seqaligns), (u'strucaligns', _Bundle_seqs_aligns_strucaligns), (u'imports', _Bundle_seqs_aligns_imports), (u'style-dictionary', _Bundle_seqs_aligns_style_dictionary), (u'user-annotations', _Bundle_seqs_aligns_user_annotations), ]) Bundle_seqs_aligns._ext = None #-----< Biostruc-seqs-aligns-cdd >-----# Biostruc_seqs_aligns_cdd = SEQ(name=u'Biostruc-seqs-aligns-cdd', mode=MODE_TYPE) _Biostruc_seqs_aligns_cdd_seq_align_data = CHOICE(name=u'seq-align-data', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Biostruc_seqs_aligns_cdd_seq_align_data_bundle = SEQ(name=u'bundle', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Bundle-seqs-aligns'))) __Biostruc_seqs_aligns_cdd_seq_align_data_cdd = SEQ(name=u'cdd', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cdd', 'Cdd'))) _Biostruc_seqs_aligns_cdd_seq_align_data._cont = ASN1Dict([ (u'bundle', __Biostruc_seqs_aligns_cdd_seq_align_data_bundle), (u'cdd', __Biostruc_seqs_aligns_cdd_seq_align_data_cdd), ]) _Biostruc_seqs_aligns_cdd_seq_align_data._ext = None _Biostruc_seqs_aligns_cdd_structures = SET_OF(name=u'structures', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Biostruc_seqs_aligns_cdd_structures__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc'))) _Biostruc_seqs_aligns_cdd_structures._cont = __Biostruc_seqs_aligns_cdd_structures__item_ _Biostruc_seqs_aligns_cdd_structure_type = ENUM(name=u'structure-type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Biostruc_seqs_aligns_cdd_structure_type._cont = ASN1Dict([(u'ncbi-backbone', 2), (u'ncbi-all-atom', 3), (u'pdb-model', 4)]) _Biostruc_seqs_aligns_cdd_structure_type._ext = None Biostruc_seqs_aligns_cdd._cont = ASN1Dict([ (u'seq-align-data', _Biostruc_seqs_aligns_cdd_seq_align_data), (u'structures', _Biostruc_seqs_aligns_cdd_structures), (u'structure-type', _Biostruc_seqs_aligns_cdd_structure_type), ]) Biostruc_seqs_aligns_cdd._ext = None #-----< Biostruc-align >-----# Biostruc_align = SEQ(name=u'Biostruc-align', mode=MODE_TYPE) _Biostruc_align_master = SEQ(name=u'master', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc'))) _Biostruc_align_slaves = SET_OF(name=u'slaves', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_align_slaves__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('MMDB', 'Biostruc'))) _Biostruc_align_slaves._cont = __Biostruc_align_slaves__item_ _Biostruc_align_alignments = SEQ(name=u'alignments', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-annot-set'))) _Biostruc_align_sequences = SET_OF(name=u'sequences', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_align_sequences__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Biostruc_align_sequences._cont = __Biostruc_align_sequences__item_ _Biostruc_align_seqalign = SET_OF(name=u'seqalign', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_align_seqalign__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Biostruc_align_seqalign._cont = __Biostruc_align_seqalign__item_ _Biostruc_align_style_dictionary = SEQ(name=u'style-dictionary', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-dictionary')), opt=True) _Biostruc_align_user_annotations = SEQ(name=u'user-annotations', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotations')), opt=True) Biostruc_align._cont = ASN1Dict([ (u'master', _Biostruc_align_master), (u'slaves', _Biostruc_align_slaves), (u'alignments', _Biostruc_align_alignments), (u'sequences', _Biostruc_align_sequences), (u'seqalign', _Biostruc_align_seqalign), (u'style-dictionary', _Biostruc_align_style_dictionary), (u'user-annotations', _Biostruc_align_user_annotations), ]) Biostruc_align._ext = None #-----< Biostruc-align-seq >-----# Biostruc_align_seq = SEQ(name=u'Biostruc-align-seq', mode=MODE_TYPE) _Biostruc_align_seq_sequences = SET_OF(name=u'sequences', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_align_seq_sequences__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Biostruc_align_seq_sequences._cont = __Biostruc_align_seq_sequences__item_ _Biostruc_align_seq_seqalign = SET_OF(name=u'seqalign', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_align_seq_seqalign__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Biostruc_align_seq_seqalign._cont = __Biostruc_align_seq_seqalign__item_ _Biostruc_align_seq_style_dictionary = SEQ(name=u'style-dictionary', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-dictionary')), opt=True) _Biostruc_align_seq_user_annotations = SEQ(name=u'user-annotations', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotations')), opt=True) Biostruc_align_seq._cont = ASN1Dict([ (u'sequences', _Biostruc_align_seq_sequences), (u'seqalign', _Biostruc_align_seq_seqalign), (u'style-dictionary', _Biostruc_align_seq_style_dictionary), (u'user-annotations', _Biostruc_align_seq_user_annotations), ]) Biostruc_align_seq._ext = None #-----< Biostruc-seq >-----# Biostruc_seq = SEQ(name=u'Biostruc-seq', mode=MODE_TYPE) _Biostruc_seq_structure = SEQ(name=u'structure', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc'))) _Biostruc_seq_sequences = SET_OF(name=u'sequences', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_seq_sequences__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Biostruc_seq_sequences._cont = __Biostruc_seq_sequences__item_ _Biostruc_seq_style_dictionary = SEQ(name=u'style-dictionary', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-dictionary')), opt=True) _Biostruc_seq_user_annotations = SEQ(name=u'user-annotations', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotations')), opt=True) Biostruc_seq._cont = ASN1Dict([ (u'structure', _Biostruc_seq_structure), (u'sequences', _Biostruc_seq_sequences), (u'style-dictionary', _Biostruc_seq_style_dictionary), (u'user-annotations', _Biostruc_seq_user_annotations), ]) Biostruc_seq._ext = None #-----< Biostruc-seqs >-----# Biostruc_seqs = SEQ(name=u'Biostruc-seqs', mode=MODE_TYPE) _Biostruc_seqs_structure = SEQ(name=u'structure', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc'))) _Biostruc_seqs_sequences = SET_OF(name=u'sequences', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_seqs_sequences__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Biostruc_seqs_sequences._cont = __Biostruc_seqs_sequences__item_ _Biostruc_seqs_seqalign = SET_OF(name=u'seqalign', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Biostruc_seqs_seqalign__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Biostruc_seqs_seqalign._cont = __Biostruc_seqs_seqalign__item_ _Biostruc_seqs_style_dictionary = SEQ(name=u'style-dictionary', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-style-dictionary')), opt=True) _Biostruc_seqs_user_annotations = SEQ(name=u'user-annotations', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Cn3d', 'Cn3d-user-annotations')), opt=True) Biostruc_seqs._cont = ASN1Dict([ (u'structure', _Biostruc_seqs_structure), (u'sequences', _Biostruc_seqs_sequences), (u'seqalign', _Biostruc_seqs_seqalign), (u'style-dictionary', _Biostruc_seqs_style_dictionary), (u'user-annotations', _Biostruc_seqs_user_annotations), ]) Biostruc_seqs._ext = None #-----< Entrez-style >-----# Entrez_style = ENUM(name=u'Entrez-style', mode=MODE_TYPE) Entrez_style._cont = ASN1Dict([(u'docsum', 1), (u'genbank', 2), (u'genpept', 3), (u'fasta', 4), (u'asn1', 5), (u'graphic', 6), (u'alignment', 7), (u'globalview', 8), (u'report', 9), (u'medlars', 10), (u'embl', 11), (u'pdb', 12), (u'kinemage', 13)]) Entrez_style._ext = None #-----< Entrez-general >-----# Entrez_general = SEQ(name=u'Entrez-general', mode=MODE_TYPE) _Entrez_general_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Entrez_general_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Entrez_general_data_ml = SEQ(name=u'ml', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medline', 'Medline-entry'))) __Entrez_general_data_prot = CHOICE(name=u'prot', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) __Entrez_general_data_nuc = CHOICE(name=u'nuc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) __Entrez_general_data_genome = CHOICE(name=u'genome', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) __Entrez_general_data_structure = SEQ(name=u'structure', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc'))) __Entrez_general_data_strucAnnot = SEQ(name=u'strucAnnot', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('MMDB', 'Biostruc-annot-set'))) _Entrez_general_data._cont = ASN1Dict([ (u'ml', __Entrez_general_data_ml), (u'prot', __Entrez_general_data_prot), (u'nuc', __Entrez_general_data_nuc), (u'genome', __Entrez_general_data_genome), (u'structure', __Entrez_general_data_structure), (u'strucAnnot', __Entrez_general_data_strucAnnot), ]) _Entrez_general_data._ext = None _Entrez_general_style = ENUM(name=u'style', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Mime', 'Entrez-style'))) _Entrez_general_location = STR_VIS(name=u'location', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Entrez_general._cont = ASN1Dict([ (u'title', _Entrez_general_title), (u'data', _Entrez_general_data), (u'style', _Entrez_general_style), (u'location', _Entrez_general_location), ]) Entrez_general._ext = None _all_ = [ _Ncbi_mime_asn1_entrez, _Ncbi_mime_asn1_alignstruc, _Ncbi_mime_asn1_alignseq, _Ncbi_mime_asn1_strucseq, _Ncbi_mime_asn1_strucseqs, _Ncbi_mime_asn1_general, Ncbi_mime_asn1, __Bundle_seqs_aligns_sequences__item_, _Bundle_seqs_aligns_sequences, __Bundle_seqs_aligns_seqaligns__item_, _Bundle_seqs_aligns_seqaligns, _Bundle_seqs_aligns_strucaligns, __Bundle_seqs_aligns_imports__item_, _Bundle_seqs_aligns_imports, _Bundle_seqs_aligns_style_dictionary, _Bundle_seqs_aligns_user_annotations, Bundle_seqs_aligns, __Biostruc_seqs_aligns_cdd_seq_align_data_bundle, __Biostruc_seqs_aligns_cdd_seq_align_data_cdd, _Biostruc_seqs_aligns_cdd_seq_align_data, __Biostruc_seqs_aligns_cdd_structures__item_, _Biostruc_seqs_aligns_cdd_structures, _Biostruc_seqs_aligns_cdd_structure_type, Biostruc_seqs_aligns_cdd, _Biostruc_align_master, __Biostruc_align_slaves__item_, _Biostruc_align_slaves, _Biostruc_align_alignments, __Biostruc_align_sequences__item_, _Biostruc_align_sequences, __Biostruc_align_seqalign__item_, _Biostruc_align_seqalign, _Biostruc_align_style_dictionary, _Biostruc_align_user_annotations, Biostruc_align, __Biostruc_align_seq_sequences__item_, _Biostruc_align_seq_sequences, __Biostruc_align_seq_seqalign__item_, _Biostruc_align_seq_seqalign, _Biostruc_align_seq_style_dictionary, _Biostruc_align_seq_user_annotations, Biostruc_align_seq, _Biostruc_seq_structure, __Biostruc_seq_sequences__item_, _Biostruc_seq_sequences, _Biostruc_seq_style_dictionary, _Biostruc_seq_user_annotations, Biostruc_seq, _Biostruc_seqs_structure, __Biostruc_seqs_sequences__item_, _Biostruc_seqs_sequences, __Biostruc_seqs_seqalign__item_, _Biostruc_seqs_seqalign, _Biostruc_seqs_style_dictionary, _Biostruc_seqs_user_annotations, Biostruc_seqs, Entrez_style, _Entrez_general_title, __Entrez_general_data_ml, __Entrez_general_data_prot, __Entrez_general_data_nuc, __Entrez_general_data_genome, __Entrez_general_data_structure, __Entrez_general_data_strucAnnot, _Entrez_general_data, _Entrez_general_style, _Entrez_general_location, Entrez_general, ] class NCBI_ObjPrt: _name_ = u'NCBI-ObjPrt' _oid_ = [] _obj_ = [ u'PrintTemplate', u'TemplateName', u'PrintTemplateSet', u'PrintFormat', u'PrintForm', u'UserFormat', u'PrintFormBlock', u'PrintFormBoolean', u'PrintFormEnum', u'PrintFormText', ] _type_ = [ u'PrintTemplate', u'TemplateName', u'PrintTemplateSet', u'PrintFormat', u'PrintForm', u'UserFormat', u'PrintFormBlock', u'PrintFormBoolean', u'PrintFormEnum', u'PrintFormText', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< PrintTemplate >-----# PrintTemplate = SEQ(name=u'PrintTemplate', mode=MODE_TYPE) _PrintTemplate_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'TemplateName'))) _PrintTemplate_labelfrom = STR_VIS(name=u'labelfrom', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrintTemplate_format = SEQ(name=u'format', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintFormat'))) PrintTemplate._cont = ASN1Dict([ (u'name', _PrintTemplate_name), (u'labelfrom', _PrintTemplate_labelfrom), (u'format', _PrintTemplate_format), ]) PrintTemplate._ext = None #-----< TemplateName >-----# TemplateName = STR_VIS(name=u'TemplateName', mode=MODE_TYPE) #-----< PrintTemplateSet >-----# PrintTemplateSet = SEQ_OF(name=u'PrintTemplateSet', mode=MODE_TYPE) _PrintTemplateSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintTemplate'))) PrintTemplateSet._cont = _PrintTemplateSet__item_ #-----< PrintFormat >-----# PrintFormat = SEQ(name=u'PrintFormat', mode=MODE_TYPE) _PrintFormat_asn1 = STR_VIS(name=u'asn1', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PrintFormat_label = STR_VIS(name=u'label', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrintFormat_prefix = STR_VIS(name=u'prefix', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrintFormat_suffix = STR_VIS(name=u'suffix', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrintFormat_form = CHOICE(name=u'form', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintForm'))) PrintFormat._cont = ASN1Dict([ (u'asn1', _PrintFormat_asn1), (u'label', _PrintFormat_label), (u'prefix', _PrintFormat_prefix), (u'suffix', _PrintFormat_suffix), (u'form', _PrintFormat_form), ]) PrintFormat._ext = None #-----< PrintForm >-----# PrintForm = CHOICE(name=u'PrintForm', mode=MODE_TYPE) _PrintForm_block = SEQ(name=u'block', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintFormBlock'))) _PrintForm_boolean = SEQ(name=u'boolean', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintFormBoolean'))) _PrintForm_enum = SEQ(name=u'enum', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintFormEnum'))) _PrintForm_text = SEQ(name=u'text', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintFormText'))) _PrintForm_use_template = STR_VIS(name=u'use-template', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'TemplateName'))) _PrintForm_user = SEQ(name=u'user', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ObjPrt', 'UserFormat'))) _PrintForm_null = NULL(name=u'null', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PrintForm._cont = ASN1Dict([ (u'block', _PrintForm_block), (u'boolean', _PrintForm_boolean), (u'enum', _PrintForm_enum), (u'text', _PrintForm_text), (u'use-template', _PrintForm_use_template), (u'user', _PrintForm_user), (u'null', _PrintForm_null), ]) PrintForm._ext = None #-----< UserFormat >-----# UserFormat = SEQ(name=u'UserFormat', mode=MODE_TYPE) _UserFormat_printfunc = STR_VIS(name=u'printfunc', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _UserFormat_defaultfunc = STR_VIS(name=u'defaultfunc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) UserFormat._cont = ASN1Dict([ (u'printfunc', _UserFormat_printfunc), (u'defaultfunc', _UserFormat_defaultfunc), ]) UserFormat._ext = None #-----< PrintFormBlock >-----# PrintFormBlock = SEQ(name=u'PrintFormBlock', mode=MODE_TYPE) _PrintFormBlock_separator = STR_VIS(name=u'separator', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrintFormBlock_components = SEQ_OF(name=u'components', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PrintFormBlock_components__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ObjPrt', 'PrintFormat'))) _PrintFormBlock_components._cont = __PrintFormBlock_components__item_ PrintFormBlock._cont = ASN1Dict([ (u'separator', _PrintFormBlock_separator), (u'components', _PrintFormBlock_components), ]) PrintFormBlock._ext = None #-----< PrintFormBoolean >-----# PrintFormBoolean = SEQ(name=u'PrintFormBoolean', mode=MODE_TYPE) _PrintFormBoolean_true = STR_VIS(name=u'true', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PrintFormBoolean_false = STR_VIS(name=u'false', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) PrintFormBoolean._cont = ASN1Dict([ (u'true', _PrintFormBoolean_true), (u'false', _PrintFormBoolean_false), ]) PrintFormBoolean._ext = None #-----< PrintFormEnum >-----# PrintFormEnum = SEQ(name=u'PrintFormEnum', mode=MODE_TYPE) _PrintFormEnum_values = SEQ_OF(name=u'values', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PrintFormEnum_values__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PrintFormEnum_values._cont = __PrintFormEnum_values__item_ PrintFormEnum._cont = ASN1Dict([ (u'values', _PrintFormEnum_values), ]) PrintFormEnum._ext = None #-----< PrintFormText >-----# PrintFormText = SEQ(name=u'PrintFormText', mode=MODE_TYPE) _PrintFormText_textfunc = STR_VIS(name=u'textfunc', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) PrintFormText._cont = ASN1Dict([ (u'textfunc', _PrintFormText_textfunc), ]) PrintFormText._ext = None _all_ = [ _PrintTemplate_name, _PrintTemplate_labelfrom, _PrintTemplate_format, PrintTemplate, TemplateName, _PrintTemplateSet__item_, PrintTemplateSet, _PrintFormat_asn1, _PrintFormat_label, _PrintFormat_prefix, _PrintFormat_suffix, _PrintFormat_form, PrintFormat, _PrintForm_block, _PrintForm_boolean, _PrintForm_enum, _PrintForm_text, _PrintForm_use_template, _PrintForm_user, _PrintForm_null, PrintForm, _UserFormat_printfunc, _UserFormat_defaultfunc, UserFormat, _PrintFormBlock_separator, __PrintFormBlock_components__item_, _PrintFormBlock_components, PrintFormBlock, _PrintFormBoolean_true, _PrintFormBoolean_false, PrintFormBoolean, __PrintFormEnum_values__item_, _PrintFormEnum_values, PrintFormEnum, _PrintFormText_textfunc, PrintFormText, ] class OMSSA: _name_ = u'OMSSA' _oid_ = [] _obj_ = [ u'NameValue', u'MSSpectrum', u'MSSpectrumset', u'MSEnzymes', u'MSMod', u'MSModType', u'MSMassSet', u'MSModSpec', u'MSModSpecSet', u'MSCalcPlusOne', u'MSCalcCharge', u'MSChargeHandle', u'MSSearchType', u'MSZdependence', u'MSIterativeSettings', u'MSLibrarySettings', u'MSSearchSettings', u'MSSerialDataFormat', u'MSOutFile', u'MSSpectrumFileType', u'MSInFile', u'MSSearchSettingsSet', u'MSRequest', u'MSIonType', u'MSIonNeutralLoss', u'MSIonIsotopicType', u'MSImmonium', u'MSIon', u'MSIonAnnot', u'MSMZHit', u'MSPepHit', u'MSModHit', u'MSScoreSet', u'MSHits', u'MSHitError', u'MSUserAnnot', u'MSHitSet', u'MSResponseError', u'MSBioseq', u'MSBioseqSet', u'MSResponse', u'MSSearch', ] _type_ = [ u'NameValue', u'MSSpectrum', u'MSSpectrumset', u'MSEnzymes', u'MSMod', u'MSModType', u'MSMassSet', u'MSModSpec', u'MSModSpecSet', u'MSCalcPlusOne', u'MSCalcCharge', u'MSChargeHandle', u'MSSearchType', u'MSZdependence', u'MSIterativeSettings', u'MSLibrarySettings', u'MSSearchSettings', u'MSSerialDataFormat', u'MSOutFile', u'MSSpectrumFileType', u'MSInFile', u'MSSearchSettingsSet', u'MSRequest', u'MSIonType', u'MSIonNeutralLoss', u'MSIonIsotopicType', u'MSImmonium', u'MSIon', u'MSIonAnnot', u'MSMZHit', u'MSPepHit', u'MSModHit', u'MSScoreSet', u'MSHits', u'MSHitError', u'MSUserAnnot', u'MSHitSet', u'MSResponseError', u'MSBioseq', u'MSBioseqSet', u'MSResponse', u'MSSearch', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< NameValue >-----# NameValue = SEQ(name=u'NameValue', mode=MODE_TYPE) _NameValue_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _NameValue_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) NameValue._cont = ASN1Dict([ (u'name', _NameValue_name), (u'value', _NameValue_value), ]) NameValue._ext = None #-----< MSSpectrum >-----# MSSpectrum = SEQ(name=u'MSSpectrum', mode=MODE_TYPE) _MSSpectrum_number = INT(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSpectrum_charge = SEQ_OF(name=u'charge', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSSpectrum_charge__item_ = INT(name='_item_', mode=MODE_TYPE) _MSSpectrum_charge._cont = __MSSpectrum_charge__item_ _MSSpectrum_precursormz = INT(name=u'precursormz', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSpectrum_mz = SEQ_OF(name=u'mz', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSSpectrum_mz__item_ = INT(name='_item_', mode=MODE_TYPE) _MSSpectrum_mz._cont = __MSSpectrum_mz__item_ _MSSpectrum_abundance = SEQ_OF(name=u'abundance', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSSpectrum_abundance__item_ = INT(name='_item_', mode=MODE_TYPE) _MSSpectrum_abundance._cont = __MSSpectrum_abundance__item_ _MSSpectrum_iscale = REAL(name=u'iscale', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSpectrum_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSpectrum_ids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _MSSpectrum_ids._cont = __MSSpectrum_ids__item_ _MSSpectrum_namevalue = SEQ_OF(name=u'namevalue', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSpectrum_namevalue__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'NameValue'))) _MSSpectrum_namevalue._cont = __MSSpectrum_namevalue__item_ MSSpectrum._cont = ASN1Dict([ (u'number', _MSSpectrum_number), (u'charge', _MSSpectrum_charge), (u'precursormz', _MSSpectrum_precursormz), (u'mz', _MSSpectrum_mz), (u'abundance', _MSSpectrum_abundance), (u'iscale', _MSSpectrum_iscale), (u'ids', _MSSpectrum_ids), (u'namevalue', _MSSpectrum_namevalue), ]) MSSpectrum._ext = None #-----< MSSpectrumset >-----# MSSpectrumset = SEQ_OF(name=u'MSSpectrumset', mode=MODE_TYPE) _MSSpectrumset__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSSpectrum'))) MSSpectrumset._cont = _MSSpectrumset__item_ #-----< MSEnzymes >-----# MSEnzymes = INT(name=u'MSEnzymes', mode=MODE_TYPE) MSEnzymes._cont = ASN1Dict([(u'trypsin', 0), (u'argc', 1), (u'cnbr', 2), (u'chymotrypsin', 3), (u'formicacid', 4), (u'lysc', 5), (u'lysc-p', 6), (u'pepsin-a', 7), (u'tryp-cnbr', 8), (u'tryp-chymo', 9), (u'trypsin-p', 10), (u'whole-protein', 11), (u'aspn', 12), (u'gluc', 13), (u'aspngluc', 14), (u'top-down', 15), (u'semi-tryptic', 16), (u'no-enzyme', 17), (u'chymotrypsin-p', 18), (u'aspn-de', 19), (u'gluc-de', 20), (u'lysn', 21), (u'thermolysin-p', 22), (u'semi-chymotrypsin', 23), (u'semi-gluc', 24), (u'max', 25), (u'none', 255)]) #-----< MSMod >-----# MSMod = INT(name=u'MSMod', mode=MODE_TYPE) MSMod._cont = ASN1Dict([(u'methylk', 0), (u'oxym', 1), (u'carboxymethylc', 2), (u'carbamidomethylc', 3), (u'deamidationkq', 4), (u'propionamidec', 5), (u'phosphorylations', 6), (u'phosphorylationt', 7), (u'phosphorylationy', 8), (u'ntermmcleave', 9), (u'ntermacetyl', 10), (u'ntermmethyl', 11), (u'ntermtrimethyl', 12), (u'methythiold', 13), (u'methylq', 14), (u'trimethylk', 15), (u'methyld', 16), (u'methyle', 17), (u'ctermpepmethyl', 18), (u'trideuteromethyld', 19), (u'trideuteromethyle', 20), (u'ctermpeptrideuteromethyl', 21), (u'nformylmet', 22), (u'twoamino3oxobutanoicacid', 23), (u'acetylk', 24), (u'ctermamide', 25), (u'bmethylthiold', 26), (u'carbamidomethylk', 27), (u'carbamidometylh', 28), (u'carbamidomethyld', 29), (u'carbamidomethyle', 30), (u'carbamylk', 31), (u'ntermcarbamyl', 32), (u'citrullinationr', 33), (u'cysteicacidc', 34), (u'diiodinationy', 35), (u'dimethylk', 36), (u'dimethylr', 37), (u'ntermpepdimethyl', 38), (u'dihydroxyf', 39), (u'thioacetylk', 40), (u'ntermpeptioacetyl', 41), (u'farnesylationc', 42), (u'formylk', 43), (u'ntermpepformyl', 44), (u'formylkynureninw', 45), (u'phef', 46), (u'gammacarboxyld', 47), (u'gammacarboxyle', 48), (u'geranylgeranylc', 49), (u'ntermpepglucuronylg', 50), (u'glutathionec', 51), (u'glyglyk', 52), (u'guanidinationk', 53), (u'his2asnh', 54), (u'his2asph', 55), (u'ctermpephsem', 56), (u'ctermpephselactm', 57), (u'hydroxykynureninw', 58), (u'hydroxylationd', 59), (u'hydroxylationk', 60), (u'hydroxylationn', 61), (u'hydroxylationp', 62), (u'hydroxylationf', 63), (u'hydroxylationy', 64), (u'iodinationy', 65), (u'kynureninw', 66), (u'lipoylk', 67), (u'ctermpepmeester', 68), (u'meesterd', 69), (u'meestere', 70), (u'meesters', 71), (u'meestery', 72), (u'methylc', 73), (u'methylh', 74), (u'methyln', 75), (u'ntermpepmethyl', 76), (u'methylr', 77), (u'ntermpepmyristoyeylationg', 78), (u'ntermpepmyristoyl4hg', 79), (u'ntermpepmyristoylationg', 80), (u'myristoylationk', 81), (u'ntermformyl', 82), (u'nemc', 83), (u'nipcam', 84), (u'nitrow', 85), (u'nitroy', 86), (u'ctermpepo18', 87), (u'ctermpepdio18', 88), (u'oxyh', 89), (u'oxyw', 90), (u'ppantetheines', 91), (u'palmitoylationc', 92), (u'palmitoylationk', 93), (u'palmitoylations', 94), (u'palmitoylationt', 95), (u'phospholosss', 96), (u'phospholosst', 97), (u'phospholossy', 98), (u'phosphoneutrallossc', 99), (u'phosphoneutrallossd', 100), (u'phosphoneutrallossh', 101), (u'propionylk', 102), (u'ntermpeppropionyl', 103), (u'propionylheavyk', 104), (u'ntermpeppropionylheavy', 105), (u'pyridylk', 106), (u'ntermpeppyridyl', 107), (u'ntermpeppyrocmc', 108), (u'ntermpeppyroe', 109), (u'ntermpeppyroq', 110), (u'pyroglutamicp', 111), (u'spyridylethylc', 112), (u'semetm', 113), (u'sulfationy', 114), (u'suphonem', 115), (u'triiodinationy', 116), (u'trimethylationr', 117), (u'ntermpeptripalmitatec', 118), (u'usermod1', 119), (u'usermod2', 120), (u'usermod3', 121), (u'usermod4', 122), (u'usermod5', 123), (u'usermod6', 124), (u'usermod7', 125), (u'usermod8', 126), (u'usermod9', 127), (u'usermod10', 128), (u'icatlight', 129), (u'icatheavy', 130), (u'camthiopropanoylk', 131), (u'phosphoneutrallosss', 132), (u'phosphoneutrallosst', 133), (u'phosphoetdlosss', 134), (u'phosphoetdlosst', 135), (u'arg-13c6', 136), (u'arg-13c6-15n4', 137), (u'lys-13c6', 138), (u'oxy18', 139), (u'beta-elim-s', 140), (u'beta-elim-t', 141), (u'usermod11', 142), (u'usermod12', 143), (u'usermod13', 144), (u'usermod14', 145), (u'usermod15', 146), (u'usermod16', 147), (u'usermod17', 148), (u'usermod18', 149), (u'usermod19', 150), (u'usermod20', 151), (u'usermod21', 152), (u'usermod22', 153), (u'usermod23', 154), (u'usermod24', 155), (u'usermod25', 156), (u'usermod26', 157), (u'usermod27', 158), (u'usermod28', 159), (u'usermod29', 160), (u'usermod30', 161), (u'sulfinicacid', 162), (u'arg2orn', 163), (u'dehydro', 164), (u'carboxykynurenin', 165), (u'sumoylation', 166), (u'iTRAQ114nterm', 167), (u'iTRAQ114K', 168), (u'iTRAQ114Y', 169), (u'iTRAQ115nterm', 170), (u'iTRAQ115K', 171), (u'iTRAQ115Y', 172), (u'iTRAQ116nterm', 173), (u'iTRAQ116K', 174), (u'iTRAQ116Y', 175), (u'iTRAQ117nterm', 176), (u'iTRAQ117K', 177), (u'iTRAQ117Y', 178), (u'mmts', 179), (u'lys-2H4', 180), (u'lys-13C615N2', 181), (u'hexNAcN', 182), (u'dHexHexNAcN', 183), (u'hexNAcS', 184), (u'hexNAcT', 185), (u'mod186', 186), (u'mod187', 187), (u'mod188', 188), (u'mod189', 189), (u'mod190', 190), (u'mod191', 191), (u'mod192', 192), (u'mod193', 193), (u'mod194', 194), (u'mod195', 195), (u'mod196', 196), (u'mod197', 197), (u'mod198', 198), (u'mod199', 199), (u'mod200', 200), (u'mod201', 201), (u'mod202', 202), (u'mod203', 203), (u'mod204', 204), (u'mod205', 205), (u'mod206', 206), (u'mod207', 207), (u'mod208', 208), (u'mod209', 209), (u'mod210', 210), (u'mod211', 211), (u'mod212', 212), (u'mod213', 213), (u'mod214', 214), (u'mod215', 215), (u'mod216', 216), (u'mod217', 217), (u'mod218', 218), (u'mod219', 219), (u'mod220', 220), (u'mod221', 221), (u'mod222', 222), (u'mod223', 223), (u'mod224', 224), (u'mod225', 225), (u'mod226', 226), (u'mod227', 227), (u'mod228', 228), (u'mod229', 229), (u'mod230', 230), (u'max', 231), (u'unknown', 9999), (u'none', 10000)]) #-----< MSModType >-----# MSModType = INT(name=u'MSModType', mode=MODE_TYPE) MSModType._cont = ASN1Dict([(u'modaa', 0), (u'modn', 1), (u'modnaa', 2), (u'modc', 3), (u'modcaa', 4), (u'modnp', 5), (u'modnpaa', 6), (u'modcp', 7), (u'modcpaa', 8), (u'modmax', 9)]) #-----< MSMassSet >-----# MSMassSet = SEQ(name=u'MSMassSet', mode=MODE_TYPE) _MSMassSet_monomass = REAL(name=u'monomass', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSMassSet_averagemass = REAL(name=u'averagemass', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSMassSet_n15mass = REAL(name=u'n15mass', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) MSMassSet._cont = ASN1Dict([ (u'monomass', _MSMassSet_monomass), (u'averagemass', _MSMassSet_averagemass), (u'n15mass', _MSMassSet_n15mass), ]) MSMassSet._ext = None #-----< MSModSpec >-----# MSModSpec = SEQ(name=u'MSModSpec', mode=MODE_TYPE) _MSModSpec_mod = INT(name=u'mod', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSMod'))) _MSModSpec_type = INT(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSModType'))) _MSModSpec_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSModSpec_monomass = REAL(name=u'monomass', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSModSpec_averagemass = REAL(name=u'averagemass', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSModSpec_n15mass = REAL(name=u'n15mass', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSModSpec_residues = SEQ_OF(name=u'residues', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSModSpec_residues__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _MSModSpec_residues._cont = __MSModSpec_residues__item_ _MSModSpec_neutralloss = SEQ(name=u'neutralloss', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSMassSet')), opt=True) _MSModSpec_unimod = INT(name=u'unimod', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSModSpec_psi_ms = STR_VIS(name=u'psi-ms', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MSModSpec._cont = ASN1Dict([ (u'mod', _MSModSpec_mod), (u'type', _MSModSpec_type), (u'name', _MSModSpec_name), (u'monomass', _MSModSpec_monomass), (u'averagemass', _MSModSpec_averagemass), (u'n15mass', _MSModSpec_n15mass), (u'residues', _MSModSpec_residues), (u'neutralloss', _MSModSpec_neutralloss), (u'unimod', _MSModSpec_unimod), (u'psi-ms', _MSModSpec_psi_ms), ]) MSModSpec._ext = None #-----< MSModSpecSet >-----# MSModSpecSet = SEQ_OF(name=u'MSModSpecSet', mode=MODE_TYPE) _MSModSpecSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSModSpec'))) MSModSpecSet._cont = _MSModSpecSet__item_ #-----< MSCalcPlusOne >-----# MSCalcPlusOne = INT(name=u'MSCalcPlusOne', mode=MODE_TYPE) MSCalcPlusOne._cont = ASN1Dict([(u'dontcalc', 0), (u'calc', 1)]) #-----< MSCalcCharge >-----# MSCalcCharge = INT(name=u'MSCalcCharge', mode=MODE_TYPE) MSCalcCharge._cont = ASN1Dict([(u'calculate', 0), (u'usefile', 1), (u'userange', 2)]) #-----< MSChargeHandle >-----# MSChargeHandle = SEQ(name=u'MSChargeHandle', mode=MODE_TYPE) _MSChargeHandle_calcplusone = INT(name=u'calcplusone', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSCalcPlusOne')), default=1) _MSChargeHandle_calccharge = INT(name=u'calccharge', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSCalcCharge')), default=2) _MSChargeHandle_mincharge = INT(name=u'mincharge', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _MSChargeHandle_maxcharge = INT(name=u'maxcharge', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=3) _MSChargeHandle_considermult = INT(name=u'considermult', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=3) _MSChargeHandle_plusone = REAL(name=u'plusone', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSChargeHandle_maxproductcharge = INT(name=u'maxproductcharge', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSChargeHandle_prodlesspre = BOOL(name=u'prodlesspre', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSChargeHandle_negative = INT(name=u'negative', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) MSChargeHandle._cont = ASN1Dict([ (u'calcplusone', _MSChargeHandle_calcplusone), (u'calccharge', _MSChargeHandle_calccharge), (u'mincharge', _MSChargeHandle_mincharge), (u'maxcharge', _MSChargeHandle_maxcharge), (u'considermult', _MSChargeHandle_considermult), (u'plusone', _MSChargeHandle_plusone), (u'maxproductcharge', _MSChargeHandle_maxproductcharge), (u'prodlesspre', _MSChargeHandle_prodlesspre), (u'negative', _MSChargeHandle_negative), ]) MSChargeHandle._ext = None #-----< MSSearchType >-----# MSSearchType = INT(name=u'MSSearchType', mode=MODE_TYPE) MSSearchType._cont = ASN1Dict([(u'monoisotopic', 0), (u'average', 1), (u'monon15', 2), (u'exact', 3), (u'multiisotope', 4), (u'max', 5)]) #-----< MSZdependence >-----# MSZdependence = INT(name=u'MSZdependence', mode=MODE_TYPE) MSZdependence._cont = ASN1Dict([(u'independent', 0), (u'linearwithz', 1), (u'max', 2)]) #-----< MSIterativeSettings >-----# MSIterativeSettings = SEQ(name=u'MSIterativeSettings', mode=MODE_TYPE) _MSIterativeSettings_researchthresh = REAL(name=u'researchthresh', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSIterativeSettings_subsetthresh = REAL(name=u'subsetthresh', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSIterativeSettings_replacethresh = REAL(name=u'replacethresh', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) MSIterativeSettings._cont = ASN1Dict([ (u'researchthresh', _MSIterativeSettings_researchthresh), (u'subsetthresh', _MSIterativeSettings_subsetthresh), (u'replacethresh', _MSIterativeSettings_replacethresh), ]) MSIterativeSettings._ext = None #-----< MSLibrarySettings >-----# MSLibrarySettings = SEQ(name=u'MSLibrarySettings', mode=MODE_TYPE) _MSLibrarySettings_libnames = SEQ_OF(name=u'libnames', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSLibrarySettings_libnames__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _MSLibrarySettings_libnames._cont = __MSLibrarySettings_libnames__item_ _MSLibrarySettings_presearch = BOOL(name=u'presearch', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSLibrarySettings_useomssascore = BOOL(name=u'useomssascore', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSLibrarySettings_usereplicatescore = BOOL(name=u'usereplicatescore', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSLibrarySettings_qtofscore = BOOL(name=u'qtofscore', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) MSLibrarySettings._cont = ASN1Dict([ (u'libnames', _MSLibrarySettings_libnames), (u'presearch', _MSLibrarySettings_presearch), (u'useomssascore', _MSLibrarySettings_useomssascore), (u'usereplicatescore', _MSLibrarySettings_usereplicatescore), (u'qtofscore', _MSLibrarySettings_qtofscore), ]) MSLibrarySettings._ext = None #-----< MSSearchSettings >-----# MSSearchSettings = SEQ(name=u'MSSearchSettings', mode=MODE_TYPE) _MSSearchSettings_precursorsearchtype = INT(name=u'precursorsearchtype', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSearchType'))) _MSSearchSettings_productsearchtype = INT(name=u'productsearchtype', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSearchType'))) _MSSearchSettings_ionstosearch = SEQ_OF(name=u'ionstosearch', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSSearchSettings_ionstosearch__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSIonType'))) _MSSearchSettings_ionstosearch._cont = __MSSearchSettings_ionstosearch__item_ _MSSearchSettings_peptol = REAL(name=u'peptol', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSearchSettings_msmstol = REAL(name=u'msmstol', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSearchSettings_zdep = INT(name=u'zdep', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSZdependence'))) _MSSearchSettings_cutoff = REAL(name=u'cutoff', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSearchSettings_cutlo = REAL(name=u'cutlo', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSearchSettings_cuthi = REAL(name=u'cuthi', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSearchSettings_cutinc = REAL(name=u'cutinc', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSSearchSettings_singlewin = INT(name=u'singlewin', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_doublewin = INT(name=u'doublewin', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_singlenum = INT(name=u'singlenum', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_doublenum = INT(name=u'doublenum', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_fixed = SEQ_OF(name=u'fixed', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSSearchSettings_fixed__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSMod'))) _MSSearchSettings_fixed._cont = __MSSearchSettings_fixed__item_ _MSSearchSettings_variable = SEQ_OF(name=u'variable', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSSearchSettings_variable__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSMod'))) _MSSearchSettings_variable._cont = __MSSearchSettings_variable__item_ _MSSearchSettings_enzyme = INT(name=u'enzyme', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSEnzymes'))) _MSSearchSettings_missedcleave = INT(name=u'missedcleave', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_hitlistlen = INT(name=u'hitlistlen', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=25) _MSSearchSettings_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_tophitnum = INT(name=u'tophitnum', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSSearchSettings_minhit = INT(name=u'minhit', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _MSSearchSettings_minspectra = INT(name=u'minspectra', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=4) _MSSearchSettings_scale = INT(name=u'scale', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=100) _MSSearchSettings_maxmods = INT(name=u'maxmods', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=64) _MSSearchSettings_taxids = SEQ_OF(name=u'taxids', mode=MODE_TYPE, tag=(25, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearchSettings_taxids__item_ = INT(name='_item_', mode=MODE_TYPE) _MSSearchSettings_taxids._cont = __MSSearchSettings_taxids__item_ _MSSearchSettings_chargehandling = SEQ(name=u'chargehandling', mode=MODE_TYPE, tag=(26, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSChargeHandle')), opt=True) _MSSearchSettings_usermods = SEQ_OF(name=u'usermods', mode=MODE_TYPE, tag=(27, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSModSpecSet')), opt=True) _MSSearchSettings_pseudocount = INT(name=u'pseudocount', mode=MODE_TYPE, tag=(28, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _MSSearchSettings_searchb1 = INT(name=u'searchb1', mode=MODE_TYPE, tag=(29, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MSSearchSettings_searchctermproduct = INT(name=u'searchctermproduct', mode=MODE_TYPE, tag=(30, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MSSearchSettings_maxproductions = INT(name=u'maxproductions', mode=MODE_TYPE, tag=(31, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MSSearchSettings_minnoenzyme = INT(name=u'minnoenzyme', mode=MODE_TYPE, tag=(32, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=4) _MSSearchSettings_maxnoenzyme = INT(name=u'maxnoenzyme', mode=MODE_TYPE, tag=(33, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MSSearchSettings_exactmass = REAL(name=u'exactmass', mode=MODE_TYPE, tag=(34, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _MSSearchSettings_settingid = INT(name=u'settingid', mode=MODE_TYPE, tag=(35, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_iterativesettings = SEQ(name=u'iterativesettings', mode=MODE_TYPE, tag=(36, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSIterativeSettings')), opt=True) _MSSearchSettings_precursorcull = INT(name=u'precursorcull', mode=MODE_TYPE, tag=(37, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_infiles = SEQ_OF(name=u'infiles', mode=MODE_TYPE, tag=(38, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearchSettings_infiles__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSInFile'))) _MSSearchSettings_infiles._cont = __MSSearchSettings_infiles__item_ _MSSearchSettings_outfiles = SEQ_OF(name=u'outfiles', mode=MODE_TYPE, tag=(39, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearchSettings_outfiles__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSOutFile'))) _MSSearchSettings_outfiles._cont = __MSSearchSettings_outfiles__item_ _MSSearchSettings_nocorrelationscore = INT(name=u'nocorrelationscore', mode=MODE_TYPE, tag=(40, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_probfollowingion = REAL(name=u'probfollowingion', mode=MODE_TYPE, tag=(41, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _MSSearchSettings_nmethionine = BOOL(name=u'nmethionine', mode=MODE_TYPE, tag=(42, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_automassadjust = REAL(name=u'automassadjust', mode=MODE_TYPE, tag=(43, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _MSSearchSettings_lomasscutoff = REAL(name=u'lomasscutoff', mode=MODE_TYPE, tag=(44, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _MSSearchSettings_libsearchsettings = SEQ(name=u'libsearchsettings', mode=MODE_TYPE, tag=(45, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSLibrarySettings')), opt=True) _MSSearchSettings_noprolineions = SEQ_OF(name=u'noprolineions', mode=MODE_TYPE, tag=(46, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearchSettings_noprolineions__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSIonType'))) _MSSearchSettings_noprolineions._cont = __MSSearchSettings_noprolineions__item_ _MSSearchSettings_reversesearch = BOOL(name=u'reversesearch', mode=MODE_TYPE, tag=(47, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_othersettings = SEQ_OF(name=u'othersettings', mode=MODE_TYPE, tag=(48, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearchSettings_othersettings__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'NameValue'))) _MSSearchSettings_othersettings._cont = __MSSearchSettings_othersettings__item_ _MSSearchSettings_numisotopes = INT(name=u'numisotopes', mode=MODE_TYPE, tag=(49, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_pepppm = BOOL(name=u'pepppm', mode=MODE_TYPE, tag=(50, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_msmsppm = BOOL(name=u'msmsppm', mode=MODE_TYPE, tag=(51, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSSearchSettings_reportedhitcount = INT(name=u'reportedhitcount', mode=MODE_TYPE, tag=(52, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MSSearchSettings._cont = ASN1Dict([ (u'precursorsearchtype', _MSSearchSettings_precursorsearchtype), (u'productsearchtype', _MSSearchSettings_productsearchtype), (u'ionstosearch', _MSSearchSettings_ionstosearch), (u'peptol', _MSSearchSettings_peptol), (u'msmstol', _MSSearchSettings_msmstol), (u'zdep', _MSSearchSettings_zdep), (u'cutoff', _MSSearchSettings_cutoff), (u'cutlo', _MSSearchSettings_cutlo), (u'cuthi', _MSSearchSettings_cuthi), (u'cutinc', _MSSearchSettings_cutinc), (u'singlewin', _MSSearchSettings_singlewin), (u'doublewin', _MSSearchSettings_doublewin), (u'singlenum', _MSSearchSettings_singlenum), (u'doublenum', _MSSearchSettings_doublenum), (u'fixed', _MSSearchSettings_fixed), (u'variable', _MSSearchSettings_variable), (u'enzyme', _MSSearchSettings_enzyme), (u'missedcleave', _MSSearchSettings_missedcleave), (u'hitlistlen', _MSSearchSettings_hitlistlen), (u'db', _MSSearchSettings_db), (u'tophitnum', _MSSearchSettings_tophitnum), (u'minhit', _MSSearchSettings_minhit), (u'minspectra', _MSSearchSettings_minspectra), (u'scale', _MSSearchSettings_scale), (u'maxmods', _MSSearchSettings_maxmods), (u'taxids', _MSSearchSettings_taxids), (u'chargehandling', _MSSearchSettings_chargehandling), (u'usermods', _MSSearchSettings_usermods), (u'pseudocount', _MSSearchSettings_pseudocount), (u'searchb1', _MSSearchSettings_searchb1), (u'searchctermproduct', _MSSearchSettings_searchctermproduct), (u'maxproductions', _MSSearchSettings_maxproductions), (u'minnoenzyme', _MSSearchSettings_minnoenzyme), (u'maxnoenzyme', _MSSearchSettings_maxnoenzyme), (u'exactmass', _MSSearchSettings_exactmass), (u'settingid', _MSSearchSettings_settingid), (u'iterativesettings', _MSSearchSettings_iterativesettings), (u'precursorcull', _MSSearchSettings_precursorcull), (u'infiles', _MSSearchSettings_infiles), (u'outfiles', _MSSearchSettings_outfiles), (u'nocorrelationscore', _MSSearchSettings_nocorrelationscore), (u'probfollowingion', _MSSearchSettings_probfollowingion), (u'nmethionine', _MSSearchSettings_nmethionine), (u'automassadjust', _MSSearchSettings_automassadjust), (u'lomasscutoff', _MSSearchSettings_lomasscutoff), (u'libsearchsettings', _MSSearchSettings_libsearchsettings), (u'noprolineions', _MSSearchSettings_noprolineions), (u'reversesearch', _MSSearchSettings_reversesearch), (u'othersettings', _MSSearchSettings_othersettings), (u'numisotopes', _MSSearchSettings_numisotopes), (u'pepppm', _MSSearchSettings_pepppm), (u'msmsppm', _MSSearchSettings_msmsppm), (u'reportedhitcount', _MSSearchSettings_reportedhitcount), ]) MSSearchSettings._ext = None #-----< MSSerialDataFormat >-----# MSSerialDataFormat = INT(name=u'MSSerialDataFormat', mode=MODE_TYPE) MSSerialDataFormat._cont = ASN1Dict([(u'none', 0), (u'asntext', 1), (u'asnbinary', 2), (u'xml', 3), (u'csv', 4), (u'pepxml', 5), (u'xmlbz2', 6)]) #-----< MSOutFile >-----# MSOutFile = SEQ(name=u'MSOutFile', mode=MODE_TYPE) _MSOutFile_outfile = STR_VIS(name=u'outfile', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSOutFile_outfiletype = INT(name=u'outfiletype', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSerialDataFormat'))) _MSOutFile_includerequest = BOOL(name=u'includerequest', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) MSOutFile._cont = ASN1Dict([ (u'outfile', _MSOutFile_outfile), (u'outfiletype', _MSOutFile_outfiletype), (u'includerequest', _MSOutFile_includerequest), ]) MSOutFile._ext = None #-----< MSSpectrumFileType >-----# MSSpectrumFileType = INT(name=u'MSSpectrumFileType', mode=MODE_TYPE) MSSpectrumFileType._cont = ASN1Dict([(u'dta', 0), (u'dtablank', 1), (u'dtaxml', 2), (u'asc', 3), (u'pkl', 4), (u'pks', 5), (u'sciex', 6), (u'mgf', 7), (u'unknown', 8), (u'oms', 9), (u'omx', 10), (u'xml', 11), (u'omxbz2', 12)]) #-----< MSInFile >-----# MSInFile = SEQ(name=u'MSInFile', mode=MODE_TYPE) _MSInFile_infile = STR_VIS(name=u'infile', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSInFile_infiletype = INT(name=u'infiletype', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSpectrumFileType'))) MSInFile._cont = ASN1Dict([ (u'infile', _MSInFile_infile), (u'infiletype', _MSInFile_infiletype), ]) MSInFile._ext = None #-----< MSSearchSettingsSet >-----# MSSearchSettingsSet = SEQ_OF(name=u'MSSearchSettingsSet', mode=MODE_TYPE) _MSSearchSettingsSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSSearchSettings'))) MSSearchSettingsSet._cont = _MSSearchSettingsSet__item_ #-----< MSRequest >-----# MSRequest = SEQ(name=u'MSRequest', mode=MODE_TYPE) _MSRequest_spectra = SEQ_OF(name=u'spectra', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSpectrumset'))) _MSRequest_settings = SEQ(name=u'settings', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSearchSettings'))) _MSRequest_rid = STR_VIS(name=u'rid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSRequest_moresettings = SEQ_OF(name=u'moresettings', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSSearchSettingsSet')), opt=True) _MSRequest_modset = SEQ_OF(name=u'modset', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSModSpecSet')), opt=True) MSRequest._cont = ASN1Dict([ (u'spectra', _MSRequest_spectra), (u'settings', _MSRequest_settings), (u'rid', _MSRequest_rid), (u'moresettings', _MSRequest_moresettings), (u'modset', _MSRequest_modset), ]) MSRequest._ext = None #-----< MSIonType >-----# MSIonType = INT(name=u'MSIonType', mode=MODE_TYPE) MSIonType._cont = ASN1Dict([(u'a', 0), (u'b', 1), (u'c', 2), (u'x', 3), (u'y', 4), (u'z', 5), (u'parent', 6), (u'internal', 7), (u'immonium', 8), (u'unknown', 9), (u'adot', 10), (u'x-CO2', 11), (u'adot-CO2', 12), (u'max', 13)]) #-----< MSIonNeutralLoss >-----# MSIonNeutralLoss = INT(name=u'MSIonNeutralLoss', mode=MODE_TYPE) MSIonNeutralLoss._cont = ASN1Dict([(u'water', 0), (u'ammonia', 1)]) #-----< MSIonIsotopicType >-----# MSIonIsotopicType = INT(name=u'MSIonIsotopicType', mode=MODE_TYPE) MSIonIsotopicType._cont = ASN1Dict([(u'monoisotopic', 0), (u'c13', 1), (u'c13two', 2), (u'c13three', 3), (u'c13four', 4)]) #-----< MSImmonium >-----# MSImmonium = SEQ(name=u'MSImmonium', mode=MODE_TYPE) _MSImmonium_parent = STR_VIS(name=u'parent', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSImmonium_product = STR_VIS(name=u'product', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MSImmonium._cont = ASN1Dict([ (u'parent', _MSImmonium_parent), (u'product', _MSImmonium_product), ]) MSImmonium._ext = None #-----< MSIon >-----# MSIon = SEQ(name=u'MSIon', mode=MODE_TYPE) _MSIon_neutralloss = INT(name=u'neutralloss', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSIonNeutralLoss')), opt=True) _MSIon_isotope = INT(name=u'isotope', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSIonIsotopicType')), opt=True) _MSIon_internal = STR_VIS(name=u'internal', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSIon_immonium = SEQ(name=u'immonium', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSImmonium')), opt=True) MSIon._cont = ASN1Dict([ (u'neutralloss', _MSIon_neutralloss), (u'isotope', _MSIon_isotope), (u'internal', _MSIon_internal), (u'immonium', _MSIon_immonium), ]) MSIon._ext = None #-----< MSIonAnnot >-----# MSIonAnnot = SEQ(name=u'MSIonAnnot', mode=MODE_TYPE) _MSIonAnnot_suspect = BOOL(name=u'suspect', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSIonAnnot_massdiff = REAL(name=u'massdiff', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _MSIonAnnot_missingisotope = BOOL(name=u'missingisotope', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MSIonAnnot._cont = ASN1Dict([ (u'suspect', _MSIonAnnot_suspect), (u'massdiff', _MSIonAnnot_massdiff), (u'missingisotope', _MSIonAnnot_missingisotope), ]) MSIonAnnot._ext = None #-----< MSMZHit >-----# MSMZHit = SEQ(name=u'MSMZHit', mode=MODE_TYPE) _MSMZHit_ion = INT(name=u'ion', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSIonType'))) _MSMZHit_charge = INT(name=u'charge', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSMZHit_number = INT(name=u'number', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSMZHit_mz = INT(name=u'mz', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSMZHit_index = INT(name=u'index', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSMZHit_moreion = SEQ(name=u'moreion', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSIon')), opt=True) _MSMZHit_annotation = SEQ(name=u'annotation', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSIonAnnot')), opt=True) MSMZHit._cont = ASN1Dict([ (u'ion', _MSMZHit_ion), (u'charge', _MSMZHit_charge), (u'number', _MSMZHit_number), (u'mz', _MSMZHit_mz), (u'index', _MSMZHit_index), (u'moreion', _MSMZHit_moreion), (u'annotation', _MSMZHit_annotation), ]) MSMZHit._ext = None #-----< MSPepHit >-----# MSPepHit = SEQ(name=u'MSPepHit', mode=MODE_TYPE) _MSPepHit_start = INT(name=u'start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSPepHit_stop = INT(name=u'stop', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSPepHit_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_defline = STR_VIS(name=u'defline', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_protlength = INT(name=u'protlength', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_oid = INT(name=u'oid', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_reversed = BOOL(name=u'reversed', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_pepstart = STR_VIS(name=u'pepstart', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSPepHit_pepstop = STR_VIS(name=u'pepstop', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MSPepHit._cont = ASN1Dict([ (u'start', _MSPepHit_start), (u'stop', _MSPepHit_stop), (u'gi', _MSPepHit_gi), (u'accession', _MSPepHit_accession), (u'defline', _MSPepHit_defline), (u'protlength', _MSPepHit_protlength), (u'oid', _MSPepHit_oid), (u'reversed', _MSPepHit_reversed), (u'pepstart', _MSPepHit_pepstart), (u'pepstop', _MSPepHit_pepstop), ]) MSPepHit._ext = None #-----< MSModHit >-----# MSModHit = SEQ(name=u'MSModHit', mode=MODE_TYPE) _MSModHit_site = INT(name=u'site', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSModHit_modtype = INT(name=u'modtype', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSMod'))) MSModHit._cont = ASN1Dict([ (u'site', _MSModHit_site), (u'modtype', _MSModHit_modtype), ]) MSModHit._ext = None #-----< MSScoreSet >-----# MSScoreSet = SEQ(name=u'MSScoreSet', mode=MODE_TYPE) _MSScoreSet_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSScoreSet_value = REAL(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) MSScoreSet._cont = ASN1Dict([ (u'name', _MSScoreSet_name), (u'value', _MSScoreSet_value), ]) MSScoreSet._ext = None #-----< MSHits >-----# MSHits = SEQ(name=u'MSHits', mode=MODE_TYPE) _MSHits_evalue = REAL(name=u'evalue', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSHits_pvalue = REAL(name=u'pvalue', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _MSHits_charge = INT(name=u'charge', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSHits_pephits = SEQ_OF(name=u'pephits', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSHits_pephits__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSPepHit'))) _MSHits_pephits._cont = __MSHits_pephits__item_ _MSHits_mzhits = SEQ_OF(name=u'mzhits', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSHits_mzhits__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSMZHit'))) _MSHits_mzhits._cont = __MSHits_mzhits__item_ _MSHits_pepstring = STR_VIS(name=u'pepstring', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_mass = INT(name=u'mass', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_mods = SEQ_OF(name=u'mods', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSHits_mods__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSModHit'))) _MSHits_mods._cont = __MSHits_mods__item_ _MSHits_pepstart = STR_VIS(name=u'pepstart', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_pepstop = STR_VIS(name=u'pepstop', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_protlength = INT(name=u'protlength', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_theomass = INT(name=u'theomass', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_oid = INT(name=u'oid', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHits_scores = SEQ_OF(name=u'scores', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSHits_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSScoreSet'))) _MSHits_scores._cont = __MSHits_scores__item_ _MSHits_libaccession = STR_VIS(name=u'libaccession', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MSHits._cont = ASN1Dict([ (u'evalue', _MSHits_evalue), (u'pvalue', _MSHits_pvalue), (u'charge', _MSHits_charge), (u'pephits', _MSHits_pephits), (u'mzhits', _MSHits_mzhits), (u'pepstring', _MSHits_pepstring), (u'mass', _MSHits_mass), (u'mods', _MSHits_mods), (u'pepstart', _MSHits_pepstart), (u'pepstop', _MSHits_pepstop), (u'protlength', _MSHits_protlength), (u'theomass', _MSHits_theomass), (u'oid', _MSHits_oid), (u'scores', _MSHits_scores), (u'libaccession', _MSHits_libaccession), ]) MSHits._ext = None #-----< MSHitError >-----# MSHitError = INT(name=u'MSHitError', mode=MODE_TYPE) MSHitError._cont = ASN1Dict([(u'none', 0), (u'generalerr', 1), (u'unable2read', 2), (u'notenuffpeaks', 3)]) #-----< MSUserAnnot >-----# MSUserAnnot = INT(name=u'MSUserAnnot', mode=MODE_TYPE) MSUserAnnot._cont = ASN1Dict([(u'none', 0), (u'delete', 1), (u'flag', 2)]) #-----< MSHitSet >-----# MSHitSet = SEQ(name=u'MSHitSet', mode=MODE_TYPE) _MSHitSet_number = INT(name=u'number', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSHitSet_error = INT(name=u'error', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSHitError')), opt=True) _MSHitSet_hits = SEQ_OF(name=u'hits', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSHitSet_hits__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSHits'))) _MSHitSet_hits._cont = __MSHitSet_hits__item_ _MSHitSet_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSHitSet_ids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _MSHitSet_ids._cont = __MSHitSet_ids__item_ _MSHitSet_namevalue = SEQ_OF(name=u'namevalue', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSHitSet_namevalue__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'NameValue'))) _MSHitSet_namevalue._cont = __MSHitSet_namevalue__item_ _MSHitSet_settingid = INT(name=u'settingid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSHitSet_userannotation = INT(name=u'userannotation', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSUserAnnot')), opt=True) MSHitSet._cont = ASN1Dict([ (u'number', _MSHitSet_number), (u'error', _MSHitSet_error), (u'hits', _MSHitSet_hits), (u'ids', _MSHitSet_ids), (u'namevalue', _MSHitSet_namevalue), (u'settingid', _MSHitSet_settingid), (u'userannotation', _MSHitSet_userannotation), ]) MSHitSet._ext = None #-----< MSResponseError >-----# MSResponseError = INT(name=u'MSResponseError', mode=MODE_TYPE) MSResponseError._cont = ASN1Dict([(u'none', 0), (u'generalerr', 1), (u'noblastdb', 2), (u'noinput', 3)]) #-----< MSBioseq >-----# MSBioseq = SEQ(name=u'MSBioseq', mode=MODE_TYPE) _MSBioseq_oid = INT(name=u'oid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _MSBioseq_seq = SEQ(name=u'seq', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) MSBioseq._cont = ASN1Dict([ (u'oid', _MSBioseq_oid), (u'seq', _MSBioseq_seq), ]) MSBioseq._ext = None #-----< MSBioseqSet >-----# MSBioseqSet = SEQ_OF(name=u'MSBioseqSet', mode=MODE_TYPE) _MSBioseqSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSBioseq'))) MSBioseqSet._cont = _MSBioseqSet__item_ #-----< MSResponse >-----# MSResponse = SEQ(name=u'MSResponse', mode=MODE_TYPE) _MSResponse_hitsets = SEQ_OF(name=u'hitsets', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __MSResponse_hitsets__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSHitSet'))) _MSResponse_hitsets._cont = __MSResponse_hitsets__item_ _MSResponse_scale = INT(name=u'scale', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=100) _MSResponse_rid = STR_VIS(name=u'rid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSResponse_error = INT(name=u'error', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSResponseError')), opt=True) _MSResponse_version = STR_VIS(name=u'version', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSResponse_email = STR_VIS(name=u'email', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSResponse_dbversion = INT(name=u'dbversion', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MSResponse_bioseqs = SEQ_OF(name=u'bioseqs', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('OMSSA', 'MSBioseqSet')), opt=True) MSResponse._cont = ASN1Dict([ (u'hitsets', _MSResponse_hitsets), (u'scale', _MSResponse_scale), (u'rid', _MSResponse_rid), (u'error', _MSResponse_error), (u'version', _MSResponse_version), (u'email', _MSResponse_email), (u'dbversion', _MSResponse_dbversion), (u'bioseqs', _MSResponse_bioseqs), ]) MSResponse._ext = None #-----< MSSearch >-----# MSSearch = SEQ(name=u'MSSearch', mode=MODE_TYPE) _MSSearch_request = SEQ_OF(name=u'request', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearch_request__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSRequest'))) _MSSearch_request._cont = __MSSearch_request__item_ _MSSearch_response = SEQ_OF(name=u'response', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __MSSearch_response__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('OMSSA', 'MSResponse'))) _MSSearch_response._cont = __MSSearch_response__item_ MSSearch._cont = ASN1Dict([ (u'request', _MSSearch_request), (u'response', _MSSearch_response), ]) MSSearch._ext = None _all_ = [ _NameValue_name, _NameValue_value, NameValue, _MSSpectrum_number, __MSSpectrum_charge__item_, _MSSpectrum_charge, _MSSpectrum_precursormz, __MSSpectrum_mz__item_, _MSSpectrum_mz, __MSSpectrum_abundance__item_, _MSSpectrum_abundance, _MSSpectrum_iscale, __MSSpectrum_ids__item_, _MSSpectrum_ids, __MSSpectrum_namevalue__item_, _MSSpectrum_namevalue, MSSpectrum, _MSSpectrumset__item_, MSSpectrumset, MSEnzymes, MSMod, MSModType, _MSMassSet_monomass, _MSMassSet_averagemass, _MSMassSet_n15mass, MSMassSet, _MSModSpec_mod, _MSModSpec_type, _MSModSpec_name, _MSModSpec_monomass, _MSModSpec_averagemass, _MSModSpec_n15mass, __MSModSpec_residues__item_, _MSModSpec_residues, _MSModSpec_neutralloss, _MSModSpec_unimod, _MSModSpec_psi_ms, MSModSpec, _MSModSpecSet__item_, MSModSpecSet, MSCalcPlusOne, MSCalcCharge, _MSChargeHandle_calcplusone, _MSChargeHandle_calccharge, _MSChargeHandle_mincharge, _MSChargeHandle_maxcharge, _MSChargeHandle_considermult, _MSChargeHandle_plusone, _MSChargeHandle_maxproductcharge, _MSChargeHandle_prodlesspre, _MSChargeHandle_negative, MSChargeHandle, MSSearchType, MSZdependence, _MSIterativeSettings_researchthresh, _MSIterativeSettings_subsetthresh, _MSIterativeSettings_replacethresh, MSIterativeSettings, __MSLibrarySettings_libnames__item_, _MSLibrarySettings_libnames, _MSLibrarySettings_presearch, _MSLibrarySettings_useomssascore, _MSLibrarySettings_usereplicatescore, _MSLibrarySettings_qtofscore, MSLibrarySettings, _MSSearchSettings_precursorsearchtype, _MSSearchSettings_productsearchtype, __MSSearchSettings_ionstosearch__item_, _MSSearchSettings_ionstosearch, _MSSearchSettings_peptol, _MSSearchSettings_msmstol, _MSSearchSettings_zdep, _MSSearchSettings_cutoff, _MSSearchSettings_cutlo, _MSSearchSettings_cuthi, _MSSearchSettings_cutinc, _MSSearchSettings_singlewin, _MSSearchSettings_doublewin, _MSSearchSettings_singlenum, _MSSearchSettings_doublenum, __MSSearchSettings_fixed__item_, _MSSearchSettings_fixed, __MSSearchSettings_variable__item_, _MSSearchSettings_variable, _MSSearchSettings_enzyme, _MSSearchSettings_missedcleave, _MSSearchSettings_hitlistlen, _MSSearchSettings_db, _MSSearchSettings_tophitnum, _MSSearchSettings_minhit, _MSSearchSettings_minspectra, _MSSearchSettings_scale, _MSSearchSettings_maxmods, __MSSearchSettings_taxids__item_, _MSSearchSettings_taxids, _MSSearchSettings_chargehandling, _MSSearchSettings_usermods, _MSSearchSettings_pseudocount, _MSSearchSettings_searchb1, _MSSearchSettings_searchctermproduct, _MSSearchSettings_maxproductions, _MSSearchSettings_minnoenzyme, _MSSearchSettings_maxnoenzyme, _MSSearchSettings_exactmass, _MSSearchSettings_settingid, _MSSearchSettings_iterativesettings, _MSSearchSettings_precursorcull, __MSSearchSettings_infiles__item_, _MSSearchSettings_infiles, __MSSearchSettings_outfiles__item_, _MSSearchSettings_outfiles, _MSSearchSettings_nocorrelationscore, _MSSearchSettings_probfollowingion, _MSSearchSettings_nmethionine, _MSSearchSettings_automassadjust, _MSSearchSettings_lomasscutoff, _MSSearchSettings_libsearchsettings, __MSSearchSettings_noprolineions__item_, _MSSearchSettings_noprolineions, _MSSearchSettings_reversesearch, __MSSearchSettings_othersettings__item_, _MSSearchSettings_othersettings, _MSSearchSettings_numisotopes, _MSSearchSettings_pepppm, _MSSearchSettings_msmsppm, _MSSearchSettings_reportedhitcount, MSSearchSettings, MSSerialDataFormat, _MSOutFile_outfile, _MSOutFile_outfiletype, _MSOutFile_includerequest, MSOutFile, MSSpectrumFileType, _MSInFile_infile, _MSInFile_infiletype, MSInFile, _MSSearchSettingsSet__item_, MSSearchSettingsSet, _MSRequest_spectra, _MSRequest_settings, _MSRequest_rid, _MSRequest_moresettings, _MSRequest_modset, MSRequest, MSIonType, MSIonNeutralLoss, MSIonIsotopicType, _MSImmonium_parent, _MSImmonium_product, MSImmonium, _MSIon_neutralloss, _MSIon_isotope, _MSIon_internal, _MSIon_immonium, MSIon, _MSIonAnnot_suspect, _MSIonAnnot_massdiff, _MSIonAnnot_missingisotope, MSIonAnnot, _MSMZHit_ion, _MSMZHit_charge, _MSMZHit_number, _MSMZHit_mz, _MSMZHit_index, _MSMZHit_moreion, _MSMZHit_annotation, MSMZHit, _MSPepHit_start, _MSPepHit_stop, _MSPepHit_gi, _MSPepHit_accession, _MSPepHit_defline, _MSPepHit_protlength, _MSPepHit_oid, _MSPepHit_reversed, _MSPepHit_pepstart, _MSPepHit_pepstop, MSPepHit, _MSModHit_site, _MSModHit_modtype, MSModHit, _MSScoreSet_name, _MSScoreSet_value, MSScoreSet, _MSHits_evalue, _MSHits_pvalue, _MSHits_charge, __MSHits_pephits__item_, _MSHits_pephits, __MSHits_mzhits__item_, _MSHits_mzhits, _MSHits_pepstring, _MSHits_mass, __MSHits_mods__item_, _MSHits_mods, _MSHits_pepstart, _MSHits_pepstop, _MSHits_protlength, _MSHits_theomass, _MSHits_oid, __MSHits_scores__item_, _MSHits_scores, _MSHits_libaccession, MSHits, MSHitError, MSUserAnnot, _MSHitSet_number, _MSHitSet_error, __MSHitSet_hits__item_, _MSHitSet_hits, __MSHitSet_ids__item_, _MSHitSet_ids, __MSHitSet_namevalue__item_, _MSHitSet_namevalue, _MSHitSet_settingid, _MSHitSet_userannotation, MSHitSet, MSResponseError, _MSBioseq_oid, _MSBioseq_seq, MSBioseq, _MSBioseqSet__item_, MSBioseqSet, __MSResponse_hitsets__item_, _MSResponse_hitsets, _MSResponse_scale, _MSResponse_rid, _MSResponse_error, _MSResponse_version, _MSResponse_email, _MSResponse_dbversion, _MSResponse_bioseqs, MSResponse, __MSSearch_request__item_, _MSSearch_request, __MSSearch_response__item_, _MSSearch_response, MSSearch, ] class NCBI_PCAssay: _name_ = u'NCBI-PCAssay' _oid_ = [] _obj_ = [ u'PC-AssayContainer', u'PC-AssaySubmit', u'PC-AssayResults', u'PC-AssayData', u'PC-AssayDescription', u'PC-AssayPanel', u'PC-AssayPanelMember', u'PC-CategorizedComment', u'PC-AssayDRAttr', u'PC-AssayTargetInfo', u'PC-AnnotatedXRef', u'PC-ResultType', u'PC-AssayPanelTestResult', u'PC-ConcentrationAttr', u'PC-IntegerMinMax', u'PC-RealMinMax', ] _type_ = [ u'PC-AssayContainer', u'PC-AssaySubmit', u'PC-AssayResults', u'PC-AssayData', u'PC-AssayDescription', u'PC-AssayPanel', u'PC-AssayPanelMember', u'PC-CategorizedComment', u'PC-AssayDRAttr', u'PC-AssayTargetInfo', u'PC-AnnotatedXRef', u'PC-ResultType', u'PC-AssayPanelTestResult', u'PC-ConcentrationAttr', u'PC-IntegerMinMax', u'PC-RealMinMax', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< PC-AssayContainer >-----# PC_AssayContainer = SEQ_OF(name=u'PC-AssayContainer', mode=MODE_TYPE) _PC_AssayContainer__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssaySubmit'))) PC_AssayContainer._cont = _PC_AssayContainer__item_ #-----< PC-AssaySubmit >-----# PC_AssaySubmit = SEQ(name=u'PC-AssaySubmit', mode=MODE_TYPE) _PC_AssaySubmit_assay = CHOICE(name=u'assay', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __PC_AssaySubmit_assay_aid = INT(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_AssaySubmit_assay_aid_source = CHOICE(name=u'aid-source', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Source'))) __PC_AssaySubmit_assay_descr = SEQ(name=u'descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayDescription'))) __PC_AssaySubmit_assay_aidver = SEQ(name=u'aidver', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-ID'))) _PC_AssaySubmit_assay._cont = ASN1Dict([ (u'aid', __PC_AssaySubmit_assay_aid), (u'aid-source', __PC_AssaySubmit_assay_aid_source), (u'descr', __PC_AssaySubmit_assay_descr), (u'aidver', __PC_AssaySubmit_assay_aidver), ]) _PC_AssaySubmit_assay._ext = None _PC_AssaySubmit_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssaySubmit_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayResults'))) _PC_AssaySubmit_data._cont = __PC_AssaySubmit_data__item_ _PC_AssaySubmit_revoke = SEQ_OF(name=u'revoke', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssaySubmit_revoke__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_AssaySubmit_revoke._cont = __PC_AssaySubmit_revoke__item_ PC_AssaySubmit._cont = ASN1Dict([ (u'assay', _PC_AssaySubmit_assay), (u'data', _PC_AssaySubmit_data), (u'revoke', _PC_AssaySubmit_revoke), ]) PC_AssaySubmit._ext = None #-----< PC-AssayResults >-----# PC_AssayResults = SEQ(name=u'PC-AssayResults', mode=MODE_TYPE) _PC_AssayResults_sid = INT(name=u'sid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayResults_sid_source = CHOICE(name=u'sid-source', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Source')), opt=True) _PC_AssayResults_version = INT(name=u'version', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayResults_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayResults_outcome = INT(name=u'outcome', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=4) _PC_AssayResults_outcome._cont = ASN1Dict([(u'inactive', 1), (u'active', 2), (u'inconclusive', 3), (u'unspecified', 4), (u'probe', 5)]) _PC_AssayResults_rank = INT(name=u'rank', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayResults_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayResults_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayData'))) _PC_AssayResults_data._cont = __PC_AssayResults_data__item_ _PC_AssayResults_url = STR_VIS(name=u'url', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayResults_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayResults_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AnnotatedXRef'))) _PC_AssayResults_xref._cont = __PC_AssayResults_xref__item_ _PC_AssayResults_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) PC_AssayResults._cont = ASN1Dict([ (u'sid', _PC_AssayResults_sid), (u'sid-source', _PC_AssayResults_sid_source), (u'version', _PC_AssayResults_version), (u'comment', _PC_AssayResults_comment), (u'outcome', _PC_AssayResults_outcome), (u'rank', _PC_AssayResults_rank), (u'data', _PC_AssayResults_data), (u'url', _PC_AssayResults_url), (u'xref', _PC_AssayResults_xref), (u'date', _PC_AssayResults_date), ]) PC_AssayResults._ext = None #-----< PC-AssayData >-----# PC_AssayData = SEQ(name=u'PC-AssayData', mode=MODE_TYPE) _PC_AssayData_tid = INT(name=u'tid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayData_value = CHOICE(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __PC_AssayData_value_ival = INT(name=u'ival', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_AssayData_value_fval = REAL(name=u'fval', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) __PC_AssayData_value_bval = BOOL(name=u'bval', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_AssayData_value_sval = STR_VIS(name=u'sval', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayData_value._cont = ASN1Dict([ (u'ival', __PC_AssayData_value_ival), (u'fval', __PC_AssayData_value_fval), (u'bval', __PC_AssayData_value_bval), (u'sval', __PC_AssayData_value_sval), ]) _PC_AssayData_value._ext = None PC_AssayData._cont = ASN1Dict([ (u'tid', _PC_AssayData_tid), (u'value', _PC_AssayData_value), ]) PC_AssayData._ext = None #-----< PC-AssayDescription >-----# PC_AssayDescription = SEQ(name=u'PC-AssayDescription', mode=MODE_TYPE) _PC_AssayDescription_aid = SEQ(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-ID'))) _PC_AssayDescription_aid_source = CHOICE(name=u'aid-source', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Source')), opt=True) _PC_AssayDescription_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayDescription_description = SEQ_OF(name=u'description', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_description__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayDescription_description._cont = __PC_AssayDescription_description__item_ _PC_AssayDescription_protocol = SEQ_OF(name=u'protocol', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_protocol__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayDescription_protocol._cont = __PC_AssayDescription_protocol__item_ _PC_AssayDescription_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_comment__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayDescription_comment._cont = __PC_AssayDescription_comment__item_ _PC_AssayDescription_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AnnotatedXRef'))) _PC_AssayDescription_xref._cont = __PC_AssayDescription_xref__item_ _PC_AssayDescription_results = SEQ_OF(name=u'results', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_results__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-ResultType'))) _PC_AssayDescription_results._cont = __PC_AssayDescription_results__item_ _PC_AssayDescription_pub = SEQ_OF(name=u'pub', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_pub__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _PC_AssayDescription_pub._cont = __PC_AssayDescription_pub__item_ _PC_AssayDescription_revision = INT(name=u'revision', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDescription_target = SEQ_OF(name=u'target', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_target__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayTargetInfo'))) _PC_AssayDescription_target._cont = __PC_AssayDescription_target__item_ _PC_AssayDescription_activity_outcome_method = INT(name=u'activity-outcome-method', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDescription_activity_outcome_method._cont = ASN1Dict([(u'other', 0), (u'screening', 1), (u'confirmatory', 2), (u'summary', 3)]) _PC_AssayDescription_dr = SEQ_OF(name=u'dr', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_dr__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayDRAttr'))) _PC_AssayDescription_dr._cont = __PC_AssayDescription_dr__item_ _PC_AssayDescription_substance_type = INT(name=u'substance-type', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDescription_substance_type._cont = ASN1Dict([(u'small-molecule', 1), (u'nucleotide', 2), (u'other', 255)]) _PC_AssayDescription_grant_number = SEQ_OF(name=u'grant-number', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_grant_number__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayDescription_grant_number._cont = __PC_AssayDescription_grant_number__item_ _PC_AssayDescription_project_category = INT(name=u'project-category', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDescription_project_category._cont = ASN1Dict([(u'mlscn', 1), (u'mlpcn', 2), (u'mlscn-ap', 3), (u'mlpcn-ap', 4), (u'journal-article', 5), (u'assay-vendor', 6), (u'literature-extracted', 7), (u'literature-author', 8), (u'literature-publisher', 9), (u'rnaigi', 10), (u'other', 255)]) _PC_AssayDescription_is_panel = BOOL(name=u'is-panel', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDescription_assay_group = SEQ_OF(name=u'assay-group', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_assay_group__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayDescription_assay_group._cont = __PC_AssayDescription_assay_group__item_ _PC_AssayDescription_panel_info = SEQ(name=u'panel-info', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayPanel')), opt=True) _PC_AssayDescription_is_mlp_late_stage = BOOL(name=u'is-mlp-late-stage', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDescription_categorized_comment = SEQ_OF(name=u'categorized-comment', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayDescription_categorized_comment__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-CategorizedComment'))) _PC_AssayDescription_categorized_comment._cont = __PC_AssayDescription_categorized_comment__item_ PC_AssayDescription._cont = ASN1Dict([ (u'aid', _PC_AssayDescription_aid), (u'aid-source', _PC_AssayDescription_aid_source), (u'name', _PC_AssayDescription_name), (u'description', _PC_AssayDescription_description), (u'protocol', _PC_AssayDescription_protocol), (u'comment', _PC_AssayDescription_comment), (u'xref', _PC_AssayDescription_xref), (u'results', _PC_AssayDescription_results), (u'pub', _PC_AssayDescription_pub), (u'revision', _PC_AssayDescription_revision), (u'target', _PC_AssayDescription_target), (u'activity-outcome-method', _PC_AssayDescription_activity_outcome_method), (u'dr', _PC_AssayDescription_dr), (u'substance-type', _PC_AssayDescription_substance_type), (u'grant-number', _PC_AssayDescription_grant_number), (u'project-category', _PC_AssayDescription_project_category), (u'is-panel', _PC_AssayDescription_is_panel), (u'assay-group', _PC_AssayDescription_assay_group), (u'panel-info', _PC_AssayDescription_panel_info), (u'is-mlp-late-stage', _PC_AssayDescription_is_mlp_late_stage), (u'categorized-comment', _PC_AssayDescription_categorized_comment), ]) PC_AssayDescription._ext = None #-----< PC-AssayPanel >-----# PC_AssayPanel = SEQ(name=u'PC-AssayPanel', mode=MODE_TYPE) _PC_AssayPanel_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayPanel_descr = STR_VIS(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayPanel_member = SEQ_OF(name=u'member', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanel_member__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayPanelMember'))) _PC_AssayPanel_member._cont = __PC_AssayPanel_member__item_ PC_AssayPanel._cont = ASN1Dict([ (u'name', _PC_AssayPanel_name), (u'descr', _PC_AssayPanel_descr), (u'member', _PC_AssayPanel_member), ]) PC_AssayPanel._ext = None #-----< PC-AssayPanelMember >-----# PC_AssayPanelMember = SEQ(name=u'PC-AssayPanelMember', mode=MODE_TYPE) _PC_AssayPanelMember_mid = INT(name=u'mid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayPanelMember_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayPanelMember_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayPanelMember_protocol = SEQ_OF(name=u'protocol', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanelMember_protocol__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayPanelMember_protocol._cont = __PC_AssayPanelMember_protocol__item_ _PC_AssayPanelMember_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanelMember_comment__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayPanelMember_comment._cont = __PC_AssayPanelMember_comment__item_ _PC_AssayPanelMember_target = SEQ_OF(name=u'target', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanelMember_target__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayTargetInfo'))) _PC_AssayPanelMember_target._cont = __PC_AssayPanelMember_target__item_ _PC_AssayPanelMember_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanelMember_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AnnotatedXRef'))) _PC_AssayPanelMember_xref._cont = __PC_AssayPanelMember_xref__item_ _PC_AssayPanelMember_activity_outcome_method = INT(name=u'activity-outcome-method', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayPanelMember_activity_outcome_method._cont = ASN1Dict([(u'other', 0), (u'screening', 1), (u'confirmatory', 2), (u'summary', 3)]) _PC_AssayPanelMember_dr = SEQ_OF(name=u'dr', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanelMember_dr__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayDRAttr'))) _PC_AssayPanelMember_dr._cont = __PC_AssayPanelMember_dr__item_ _PC_AssayPanelMember_categorized_comment = SEQ_OF(name=u'categorized-comment', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayPanelMember_categorized_comment__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCAssay', 'PC-CategorizedComment'))) _PC_AssayPanelMember_categorized_comment._cont = __PC_AssayPanelMember_categorized_comment__item_ PC_AssayPanelMember._cont = ASN1Dict([ (u'mid', _PC_AssayPanelMember_mid), (u'name', _PC_AssayPanelMember_name), (u'description', _PC_AssayPanelMember_description), (u'protocol', _PC_AssayPanelMember_protocol), (u'comment', _PC_AssayPanelMember_comment), (u'target', _PC_AssayPanelMember_target), (u'xref', _PC_AssayPanelMember_xref), (u'activity-outcome-method', _PC_AssayPanelMember_activity_outcome_method), (u'dr', _PC_AssayPanelMember_dr), (u'categorized-comment', _PC_AssayPanelMember_categorized_comment), ]) PC_AssayPanelMember._ext = None #-----< PC-CategorizedComment >-----# PC_CategorizedComment = SEQ(name=u'PC-CategorizedComment', mode=MODE_TYPE) _PC_CategorizedComment_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_CategorizedComment_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_CategorizedComment_comment__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_CategorizedComment_comment._cont = __PC_CategorizedComment_comment__item_ PC_CategorizedComment._cont = ASN1Dict([ (u'title', _PC_CategorizedComment_title), (u'comment', _PC_CategorizedComment_comment), ]) PC_CategorizedComment._ext = None #-----< PC-AssayDRAttr >-----# PC_AssayDRAttr = SEQ(name=u'PC-AssayDRAttr', mode=MODE_TYPE) _PC_AssayDRAttr_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayDRAttr_descr = STR_VIS(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDRAttr_dn = STR_VIS(name=u'dn', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDRAttr_rn = STR_VIS(name=u'rn', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDRAttr_type = INT(name=u'type', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayDRAttr_type._cont = ASN1Dict([(u'experimental', 0), (u'calculated', 1)]) PC_AssayDRAttr._cont = ASN1Dict([ (u'id', _PC_AssayDRAttr_id), (u'descr', _PC_AssayDRAttr_descr), (u'dn', _PC_AssayDRAttr_dn), (u'rn', _PC_AssayDRAttr_rn), (u'type', _PC_AssayDRAttr_type), ]) PC_AssayDRAttr._ext = None #-----< PC-AssayTargetInfo >-----# PC_AssayTargetInfo = SEQ(name=u'PC-AssayTargetInfo', mode=MODE_TYPE) _PC_AssayTargetInfo_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayTargetInfo_mol_id = INT(name=u'mol-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayTargetInfo_molecule_type = INT(name=u'molecule-type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _PC_AssayTargetInfo_molecule_type._cont = ASN1Dict([(u'protein', 1), (u'dna', 2), (u'rna', 3), (u'gene', 4), (u'biosystem', 5), (u'other', 255)]) _PC_AssayTargetInfo_organism = SEQ(name=u'organism', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'BioSource')), opt=True) _PC_AssayTargetInfo_descr = STR_VIS(name=u'descr', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AssayTargetInfo_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_AssayTargetInfo_comment__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_AssayTargetInfo_comment._cont = __PC_AssayTargetInfo_comment__item_ PC_AssayTargetInfo._cont = ASN1Dict([ (u'name', _PC_AssayTargetInfo_name), (u'mol-id', _PC_AssayTargetInfo_mol_id), (u'molecule-type', _PC_AssayTargetInfo_molecule_type), (u'organism', _PC_AssayTargetInfo_organism), (u'descr', _PC_AssayTargetInfo_descr), (u'comment', _PC_AssayTargetInfo_comment), ]) PC_AssayTargetInfo._ext = None #-----< PC-AnnotatedXRef >-----# PC_AnnotatedXRef = SEQ(name=u'PC-AnnotatedXRef', mode=MODE_TYPE) _PC_AnnotatedXRef_xref = CHOICE(name=u'xref', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-XRefData'))) _PC_AnnotatedXRef_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AnnotatedXRef_type = INT(name=u'type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_AnnotatedXRef_type._cont = ASN1Dict([(u'pcit', 1), (u'pgene', 2)]) PC_AnnotatedXRef._cont = ASN1Dict([ (u'xref', _PC_AnnotatedXRef_xref), (u'comment', _PC_AnnotatedXRef_comment), (u'type', _PC_AnnotatedXRef_type), ]) PC_AnnotatedXRef._ext = None #-----< PC-ResultType >-----# PC_ResultType = SEQ(name=u'PC-ResultType', mode=MODE_TYPE) _PC_ResultType_tid = INT(name=u'tid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_ResultType_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_ResultType_description = SEQ_OF(name=u'description', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_ResultType_description__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_ResultType_description._cont = __PC_ResultType_description__item_ _PC_ResultType_type = INT(name=u'type', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_ResultType_type._cont = ASN1Dict([(u'float', 1), (u'int', 2), (u'bool', 3), (u'string', 4)]) _PC_ResultType_constraints = CHOICE(name=u'constraints', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __PC_ResultType_constraints_fset = SEQ_OF(name=u'fset', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_ResultType_constraints_fset__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) __PC_ResultType_constraints_fset._cont = ___PC_ResultType_constraints_fset__item_ __PC_ResultType_constraints_fmin = REAL(name=u'fmin', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) __PC_ResultType_constraints_fmax = REAL(name=u'fmax', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) __PC_ResultType_constraints_frange = SEQ(name=u'frange', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCAssay', 'PC-RealMinMax'))) __PC_ResultType_constraints_iset = SEQ_OF(name=u'iset', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_ResultType_constraints_iset__item_ = INT(name='_item_', mode=MODE_TYPE) __PC_ResultType_constraints_iset._cont = ___PC_ResultType_constraints_iset__item_ __PC_ResultType_constraints_imin = INT(name=u'imin', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_ResultType_constraints_imax = INT(name=u'imax', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_ResultType_constraints_irange = SEQ(name=u'irange', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCAssay', 'PC-IntegerMinMax'))) __PC_ResultType_constraints_sset = SEQ_OF(name=u'sset', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_ResultType_constraints_sset__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) __PC_ResultType_constraints_sset._cont = ___PC_ResultType_constraints_sset__item_ _PC_ResultType_constraints._cont = ASN1Dict([ (u'fset', __PC_ResultType_constraints_fset), (u'fmin', __PC_ResultType_constraints_fmin), (u'fmax', __PC_ResultType_constraints_fmax), (u'frange', __PC_ResultType_constraints_frange), (u'iset', __PC_ResultType_constraints_iset), (u'imin', __PC_ResultType_constraints_imin), (u'imax', __PC_ResultType_constraints_imax), (u'irange', __PC_ResultType_constraints_irange), (u'sset', __PC_ResultType_constraints_sset), ]) _PC_ResultType_constraints._ext = None _PC_ResultType_unit = INT(name=u'unit', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_ResultType_unit._cont = ASN1Dict([(u'ppt', 1), (u'ppm', 2), (u'ppb', 3), (u'mm', 4), (u'um', 5), (u'nm', 6), (u'pm', 7), (u'fm', 8), (u'mgml', 9), (u'ugml', 10), (u'ngml', 11), (u'pgml', 12), (u'fgml', 13), (u'm', 14), (u'percent', 15), (u'ratio', 16), (u'sec', 17), (u'rsec', 18), (u'min', 19), (u'rmin', 20), (u'day', 21), (u'rday', 22), (u'ml-min-kg', 23), (u'l-kg', 24), (u'hr-ng-ml', 25), (u'cm-sec', 26), (u'mg-kg', 27), (u'none', 254), (u'unspecified', 255)]) _PC_ResultType_sunit = STR_VIS(name=u'sunit', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_ResultType_transform = INT(name=u'transform', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_ResultType_transform._cont = ASN1Dict([(u'linear', 1), (u'ln', 2), (u'log', 3), (u'reciprocal', 4), (u'negative', 5), (u'nlog', 6), (u'nln', 7)]) _PC_ResultType_stransform = STR_VIS(name=u'stransform', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_ResultType_tc = SEQ(name=u'tc', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCAssay', 'PC-ConcentrationAttr')), opt=True) _PC_ResultType_ac = BOOL(name=u'ac', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_ResultType_panel_info = SEQ(name=u'panel-info', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCAssay', 'PC-AssayPanelTestResult')), opt=True) _PC_ResultType_annot = INT(name=u'annot', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_ResultType_annot._cont = ASN1Dict([(u'pmid', 1), (u'mmdb', 2), (u'url', 3), (u'protein-gi', 4), (u'nucleotide-gi', 5), (u'taxonomy', 6), (u'mim', 7), (u'gene', 8), (u'probe', 9), (u'aid', 10), (u'sid', 11), (u'cid', 12), (u'protein-target-gi', 13), (u'biosystems-target-id', 14), (u'target-name', 15), (u'target-descr', 16), (u'target-tax-id', 17), (u'gene-target-id', 18), (u'dna-nucleotide-target-gi', 19), (u'rna-nucleotide-target-gi', 20)]) PC_ResultType._cont = ASN1Dict([ (u'tid', _PC_ResultType_tid), (u'name', _PC_ResultType_name), (u'description', _PC_ResultType_description), (u'type', _PC_ResultType_type), (u'constraints', _PC_ResultType_constraints), (u'unit', _PC_ResultType_unit), (u'sunit', _PC_ResultType_sunit), (u'transform', _PC_ResultType_transform), (u'stransform', _PC_ResultType_stransform), (u'tc', _PC_ResultType_tc), (u'ac', _PC_ResultType_ac), (u'panel-info', _PC_ResultType_panel_info), (u'annot', _PC_ResultType_annot), ]) PC_ResultType._ext = None #-----< PC-AssayPanelTestResult >-----# PC_AssayPanelTestResult = SEQ(name=u'PC-AssayPanelTestResult', mode=MODE_TYPE) _PC_AssayPanelTestResult_mid = INT(name=u'mid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AssayPanelTestResult_readout_annot = INT(name=u'readout-annot', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _PC_AssayPanelTestResult_readout_annot._cont = ASN1Dict([(u'regular', 1), (u'outcome', 2), (u'score', 3), (u'ac', 4)]) PC_AssayPanelTestResult._cont = ASN1Dict([ (u'mid', _PC_AssayPanelTestResult_mid), (u'readout-annot', _PC_AssayPanelTestResult_readout_annot), ]) PC_AssayPanelTestResult._ext = None #-----< PC-ConcentrationAttr >-----# PC_ConcentrationAttr = SEQ(name=u'PC-ConcentrationAttr', mode=MODE_TYPE) _PC_ConcentrationAttr_concentration = REAL(name=u'concentration', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PC_ConcentrationAttr_unit = INT(name=u'unit', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_ConcentrationAttr_unit._cont = ASN1Dict([(u'um', 5)]) _PC_ConcentrationAttr_dr_id = INT(name=u'dr-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) PC_ConcentrationAttr._cont = ASN1Dict([ (u'concentration', _PC_ConcentrationAttr_concentration), (u'unit', _PC_ConcentrationAttr_unit), (u'dr-id', _PC_ConcentrationAttr_dr_id), ]) PC_ConcentrationAttr._ext = None #-----< PC-IntegerMinMax >-----# PC_IntegerMinMax = SEQ(name=u'PC-IntegerMinMax', mode=MODE_TYPE) _PC_IntegerMinMax_min = INT(name=u'min', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_IntegerMinMax_max = INT(name=u'max', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_IntegerMinMax._cont = ASN1Dict([ (u'min', _PC_IntegerMinMax_min), (u'max', _PC_IntegerMinMax_max), ]) PC_IntegerMinMax._ext = None #-----< PC-RealMinMax >-----# PC_RealMinMax = SEQ(name=u'PC-RealMinMax', mode=MODE_TYPE) _PC_RealMinMax_min = REAL(name=u'min', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PC_RealMinMax_max = REAL(name=u'max', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) PC_RealMinMax._cont = ASN1Dict([ (u'min', _PC_RealMinMax_min), (u'max', _PC_RealMinMax_max), ]) PC_RealMinMax._ext = None _all_ = [ _PC_AssayContainer__item_, PC_AssayContainer, __PC_AssaySubmit_assay_aid, __PC_AssaySubmit_assay_aid_source, __PC_AssaySubmit_assay_descr, __PC_AssaySubmit_assay_aidver, _PC_AssaySubmit_assay, __PC_AssaySubmit_data__item_, _PC_AssaySubmit_data, __PC_AssaySubmit_revoke__item_, _PC_AssaySubmit_revoke, PC_AssaySubmit, _PC_AssayResults_sid, _PC_AssayResults_sid_source, _PC_AssayResults_version, _PC_AssayResults_comment, _PC_AssayResults_outcome, _PC_AssayResults_rank, __PC_AssayResults_data__item_, _PC_AssayResults_data, _PC_AssayResults_url, __PC_AssayResults_xref__item_, _PC_AssayResults_xref, _PC_AssayResults_date, PC_AssayResults, _PC_AssayData_tid, __PC_AssayData_value_ival, __PC_AssayData_value_fval, __PC_AssayData_value_bval, __PC_AssayData_value_sval, _PC_AssayData_value, PC_AssayData, _PC_AssayDescription_aid, _PC_AssayDescription_aid_source, _PC_AssayDescription_name, __PC_AssayDescription_description__item_, _PC_AssayDescription_description, __PC_AssayDescription_protocol__item_, _PC_AssayDescription_protocol, __PC_AssayDescription_comment__item_, _PC_AssayDescription_comment, __PC_AssayDescription_xref__item_, _PC_AssayDescription_xref, __PC_AssayDescription_results__item_, _PC_AssayDescription_results, __PC_AssayDescription_pub__item_, _PC_AssayDescription_pub, _PC_AssayDescription_revision, __PC_AssayDescription_target__item_, _PC_AssayDescription_target, _PC_AssayDescription_activity_outcome_method, __PC_AssayDescription_dr__item_, _PC_AssayDescription_dr, _PC_AssayDescription_substance_type, __PC_AssayDescription_grant_number__item_, _PC_AssayDescription_grant_number, _PC_AssayDescription_project_category, _PC_AssayDescription_is_panel, __PC_AssayDescription_assay_group__item_, _PC_AssayDescription_assay_group, _PC_AssayDescription_panel_info, _PC_AssayDescription_is_mlp_late_stage, __PC_AssayDescription_categorized_comment__item_, _PC_AssayDescription_categorized_comment, PC_AssayDescription, _PC_AssayPanel_name, _PC_AssayPanel_descr, __PC_AssayPanel_member__item_, _PC_AssayPanel_member, PC_AssayPanel, _PC_AssayPanelMember_mid, _PC_AssayPanelMember_name, _PC_AssayPanelMember_description, __PC_AssayPanelMember_protocol__item_, _PC_AssayPanelMember_protocol, __PC_AssayPanelMember_comment__item_, _PC_AssayPanelMember_comment, __PC_AssayPanelMember_target__item_, _PC_AssayPanelMember_target, __PC_AssayPanelMember_xref__item_, _PC_AssayPanelMember_xref, _PC_AssayPanelMember_activity_outcome_method, __PC_AssayPanelMember_dr__item_, _PC_AssayPanelMember_dr, __PC_AssayPanelMember_categorized_comment__item_, _PC_AssayPanelMember_categorized_comment, PC_AssayPanelMember, _PC_CategorizedComment_title, __PC_CategorizedComment_comment__item_, _PC_CategorizedComment_comment, PC_CategorizedComment, _PC_AssayDRAttr_id, _PC_AssayDRAttr_descr, _PC_AssayDRAttr_dn, _PC_AssayDRAttr_rn, _PC_AssayDRAttr_type, PC_AssayDRAttr, _PC_AssayTargetInfo_name, _PC_AssayTargetInfo_mol_id, _PC_AssayTargetInfo_molecule_type, _PC_AssayTargetInfo_organism, _PC_AssayTargetInfo_descr, __PC_AssayTargetInfo_comment__item_, _PC_AssayTargetInfo_comment, PC_AssayTargetInfo, _PC_AnnotatedXRef_xref, _PC_AnnotatedXRef_comment, _PC_AnnotatedXRef_type, PC_AnnotatedXRef, _PC_ResultType_tid, _PC_ResultType_name, __PC_ResultType_description__item_, _PC_ResultType_description, _PC_ResultType_type, ___PC_ResultType_constraints_fset__item_, __PC_ResultType_constraints_fset, __PC_ResultType_constraints_fmin, __PC_ResultType_constraints_fmax, __PC_ResultType_constraints_frange, ___PC_ResultType_constraints_iset__item_, __PC_ResultType_constraints_iset, __PC_ResultType_constraints_imin, __PC_ResultType_constraints_imax, __PC_ResultType_constraints_irange, ___PC_ResultType_constraints_sset__item_, __PC_ResultType_constraints_sset, _PC_ResultType_constraints, _PC_ResultType_unit, _PC_ResultType_sunit, _PC_ResultType_transform, _PC_ResultType_stransform, _PC_ResultType_tc, _PC_ResultType_ac, _PC_ResultType_panel_info, _PC_ResultType_annot, PC_ResultType, _PC_AssayPanelTestResult_mid, _PC_AssayPanelTestResult_readout_annot, PC_AssayPanelTestResult, _PC_ConcentrationAttr_concentration, _PC_ConcentrationAttr_unit, _PC_ConcentrationAttr_dr_id, PC_ConcentrationAttr, _PC_IntegerMinMax_min, _PC_IntegerMinMax_max, PC_IntegerMinMax, _PC_RealMinMax_min, _PC_RealMinMax_max, PC_RealMinMax, ] class NCBI_PCSubstance: _name_ = u'NCBI-PCSubstance' _oid_ = [] _obj_ = [ u'PC-Substance', u'PC-Substances', u'PC-ID', u'PC-Source', u'PC-DBTracking', u'PC-MMDBSource', u'PC-XRefData', u'PC-Compound', u'PC-Compounds', u'PC-CompoundType', u'PC-Count', u'PC-StereoGroup', u'PC-InfoData', u'PC-Urn', u'PC-UrnDataType', u'PC-Coordinates', u'PC-Conformer', u'PC-Conformers', u'PC-CoordinateType', u'PC-DrawAnnotations', u'PC-BondAnnotation', u'PC-Atoms', u'PC-AtomSource', u'PC-AtomInt', u'PC-AtomString', u'PC-AtomRadical', u'PC-Element', u'PC-Bonds', u'PC-BondType', u'PC-StereoCenter', u'PC-StereoTetrahedral', u'PC-StereoPlanar', u'PC-StereoSquarePlanar', u'PC-StereoOctahedral', u'PC-StereoTrigonalBiPyramid', u'PC-StereoTShape', u'PC-StereoPentagonalBiPyramid', ] _type_ = [ u'PC-Substance', u'PC-Substances', u'PC-ID', u'PC-Source', u'PC-DBTracking', u'PC-MMDBSource', u'PC-XRefData', u'PC-Compound', u'PC-Compounds', u'PC-CompoundType', u'PC-Count', u'PC-StereoGroup', u'PC-InfoData', u'PC-Urn', u'PC-UrnDataType', u'PC-Coordinates', u'PC-Conformer', u'PC-Conformers', u'PC-CoordinateType', u'PC-DrawAnnotations', u'PC-BondAnnotation', u'PC-Atoms', u'PC-AtomSource', u'PC-AtomInt', u'PC-AtomString', u'PC-AtomRadical', u'PC-Element', u'PC-Bonds', u'PC-BondType', u'PC-StereoCenter', u'PC-StereoTetrahedral', u'PC-StereoPlanar', u'PC-StereoSquarePlanar', u'PC-StereoOctahedral', u'PC-StereoTrigonalBiPyramid', u'PC-StereoTShape', u'PC-StereoPentagonalBiPyramid', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< PC-Substance >-----# PC_Substance = SEQ(name=u'PC-Substance', mode=MODE_TYPE) _PC_Substance_sid = SEQ(name=u'sid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-ID'))) _PC_Substance_source = CHOICE(name=u'source', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Source'))) _PC_Substance_pub = SEQ_OF(name=u'pub', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Substance_pub__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _PC_Substance_pub._cont = __PC_Substance_pub__item_ _PC_Substance_synonyms = SEQ_OF(name=u'synonyms', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Substance_synonyms__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_Substance_synonyms._cont = __PC_Substance_synonyms__item_ _PC_Substance_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Substance_comment__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_Substance_comment._cont = __PC_Substance_comment__item_ _PC_Substance_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Substance_xref__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-XRefData'))) _PC_Substance_xref._cont = __PC_Substance_xref__item_ _PC_Substance_compound = SEQ_OF(name=u'compound', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Compounds')), opt=True) PC_Substance._cont = ASN1Dict([ (u'sid', _PC_Substance_sid), (u'source', _PC_Substance_source), (u'pub', _PC_Substance_pub), (u'synonyms', _PC_Substance_synonyms), (u'comment', _PC_Substance_comment), (u'xref', _PC_Substance_xref), (u'compound', _PC_Substance_compound), ]) PC_Substance._ext = None #-----< PC-Substances >-----# PC_Substances = SEQ_OF(name=u'PC-Substances', mode=MODE_TYPE) _PC_Substances__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Substance'))) PC_Substances._cont = _PC_Substances__item_ #-----< PC-ID >-----# PC_ID = SEQ(name=u'PC-ID', mode=MODE_TYPE) _PC_ID_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_ID_version = INT(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_ID._cont = ASN1Dict([ (u'id', _PC_ID_id), (u'version', _PC_ID_version), ]) PC_ID._ext = None #-----< PC-Source >-----# PC_Source = CHOICE(name=u'PC-Source', mode=MODE_TYPE) _PC_Source_individual = CHOICE(name=u'individual', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _PC_Source_db = SEQ(name=u'db', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-DBTracking'))) _PC_Source_mmdb = SEQ(name=u'mmdb', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-MMDBSource'))) PC_Source._cont = ASN1Dict([ (u'individual', _PC_Source_individual), (u'db', _PC_Source_db), (u'mmdb', _PC_Source_mmdb), ]) PC_Source._ext = None #-----< PC-DBTracking >-----# PC_DBTracking = SEQ(name=u'PC-DBTracking', mode=MODE_TYPE) _PC_DBTracking_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_DBTracking_source_id = CHOICE(name=u'source-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _PC_DBTracking_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _PC_DBTracking_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_DBTracking_pub = CHOICE(name=u'pub', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub')), opt=True) PC_DBTracking._cont = ASN1Dict([ (u'name', _PC_DBTracking_name), (u'source-id', _PC_DBTracking_source_id), (u'date', _PC_DBTracking_date), (u'description', _PC_DBTracking_description), (u'pub', _PC_DBTracking_pub), ]) PC_DBTracking._ext = None #-----< PC-MMDBSource >-----# PC_MMDBSource = SEQ(name=u'PC-MMDBSource', mode=MODE_TYPE) _PC_MMDBSource_mmdb_id = INT(name=u'mmdb-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_MMDBSource_molecule_id = INT(name=u'molecule-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_MMDBSource_molecule_name = SEQ_OF(name=u'molecule-name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_MMDBSource_molecule_name__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PC_MMDBSource_molecule_name._cont = __PC_MMDBSource_molecule_name__item_ _PC_MMDBSource_residue_id = INT(name=u'residue-id', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_MMDBSource_residue_name = STR_VIS(name=u'residue-name', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_MMDBSource_atom_id = INT(name=u'atom-id', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_MMDBSource_atom_name = STR_VIS(name=u'atom-name', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) PC_MMDBSource._cont = ASN1Dict([ (u'mmdb-id', _PC_MMDBSource_mmdb_id), (u'molecule-id', _PC_MMDBSource_molecule_id), (u'molecule-name', _PC_MMDBSource_molecule_name), (u'residue-id', _PC_MMDBSource_residue_id), (u'residue-name', _PC_MMDBSource_residue_name), (u'atom-id', _PC_MMDBSource_atom_id), (u'atom-name', _PC_MMDBSource_atom_name), ]) PC_MMDBSource._ext = None #-----< PC-XRefData >-----# PC_XRefData = CHOICE(name=u'PC-XRefData', mode=MODE_TYPE) _PC_XRefData_regid = STR_VIS(name=u'regid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_rn = STR_VIS(name=u'rn', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_mesh = STR_VIS(name=u'mesh', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_pmid = INT(name=u'pmid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_mmdb = INT(name=u'mmdb', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_sid = INT(name=u'sid', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_cid = INT(name=u'cid', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_dburl = STR_VIS(name=u'dburl', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_sburl = STR_VIS(name=u'sburl', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_asurl = STR_VIS(name=u'asurl', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_protein_gi = INT(name=u'protein-gi', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_nucleotide_gi = INT(name=u'nucleotide-gi', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_taxonomy = INT(name=u'taxonomy', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_aid = INT(name=u'aid', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_mim = INT(name=u'mim', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_gene = INT(name=u'gene', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_probe = INT(name=u'probe', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_biosystem = INT(name=u'biosystem', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_geogse = INT(name=u'geogse', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_geogsm = INT(name=u'geogsm', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_XRefData_patent = STR_VIS(name=u'patent', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_XRefData._cont = ASN1Dict([ (u'regid', _PC_XRefData_regid), (u'rn', _PC_XRefData_rn), (u'mesh', _PC_XRefData_mesh), (u'pmid', _PC_XRefData_pmid), (u'gi', _PC_XRefData_gi), (u'mmdb', _PC_XRefData_mmdb), (u'sid', _PC_XRefData_sid), (u'cid', _PC_XRefData_cid), (u'dburl', _PC_XRefData_dburl), (u'sburl', _PC_XRefData_sburl), (u'asurl', _PC_XRefData_asurl), (u'protein-gi', _PC_XRefData_protein_gi), (u'nucleotide-gi', _PC_XRefData_nucleotide_gi), (u'taxonomy', _PC_XRefData_taxonomy), (u'aid', _PC_XRefData_aid), (u'mim', _PC_XRefData_mim), (u'gene', _PC_XRefData_gene), (u'probe', _PC_XRefData_probe), (u'biosystem', _PC_XRefData_biosystem), (u'geogse', _PC_XRefData_geogse), (u'geogsm', _PC_XRefData_geogsm), (u'patent', _PC_XRefData_patent), ]) PC_XRefData._ext = None #-----< PC-Compound >-----# PC_Compound = SEQ(name=u'PC-Compound', mode=MODE_TYPE) _PC_Compound_id = SEQ(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-CompoundType'))) _PC_Compound_atoms = SEQ(name=u'atoms', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Atoms')), opt=True) _PC_Compound_bonds = SEQ(name=u'bonds', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Bonds')), opt=True) _PC_Compound_stereo = SEQ_OF(name=u'stereo', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Compound_stereo__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoCenter'))) _PC_Compound_stereo._cont = __PC_Compound_stereo__item_ _PC_Compound_coords = SEQ_OF(name=u'coords', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Compound_coords__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Coordinates'))) _PC_Compound_coords._cont = __PC_Compound_coords__item_ _PC_Compound_charge = INT(name=u'charge', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Compound_props = SEQ_OF(name=u'props', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Compound_props__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-InfoData'))) _PC_Compound_props._cont = __PC_Compound_props__item_ _PC_Compound_stereogroups = SEQ_OF(name=u'stereogroups', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Compound_stereogroups__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoGroup'))) _PC_Compound_stereogroups._cont = __PC_Compound_stereogroups__item_ _PC_Compound_count = SEQ(name=u'count', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Count')), opt=True) _PC_Compound_vbalt = SEQ_OF(name=u'vbalt', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Compounds')), opt=True) PC_Compound._cont = ASN1Dict([ (u'id', _PC_Compound_id), (u'atoms', _PC_Compound_atoms), (u'bonds', _PC_Compound_bonds), (u'stereo', _PC_Compound_stereo), (u'coords', _PC_Compound_coords), (u'charge', _PC_Compound_charge), (u'props', _PC_Compound_props), (u'stereogroups', _PC_Compound_stereogroups), (u'count', _PC_Compound_count), (u'vbalt', _PC_Compound_vbalt), ]) PC_Compound._ext = None #-----< PC-Compounds >-----# PC_Compounds = SEQ_OF(name=u'PC-Compounds', mode=MODE_TYPE) _PC_Compounds__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Compound'))) PC_Compounds._cont = _PC_Compounds__item_ #-----< PC-CompoundType >-----# PC_CompoundType = SEQ(name=u'PC-CompoundType', mode=MODE_TYPE) _PC_CompoundType_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_CompoundType_type._cont = ASN1Dict([(u'deposited', 0), (u'standardized', 1), (u'component', 2), (u'neutralized', 3), (u'mixture', 4), (u'tautomer', 5), (u'pka-state', 6), (u'unknown', 255)]) _PC_CompoundType_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __PC_CompoundType_id_cid = INT(name=u'cid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_CompoundType_id_sid = INT(name=u'sid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_CompoundType_id_xid = INT(name=u'xid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_CompoundType_id._cont = ASN1Dict([ (u'cid', __PC_CompoundType_id_cid), (u'sid', __PC_CompoundType_id_sid), (u'xid', __PC_CompoundType_id_xid), ]) _PC_CompoundType_id._ext = None PC_CompoundType._cont = ASN1Dict([ (u'type', _PC_CompoundType_type), (u'id', _PC_CompoundType_id), ]) PC_CompoundType._ext = None #-----< PC-Count >-----# PC_Count = SEQ(name=u'PC-Count', mode=MODE_TYPE) _PC_Count_heavy_atom = INT(name=u'heavy-atom', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_atom_chiral = INT(name=u'atom-chiral', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_atom_chiral_def = INT(name=u'atom-chiral-def', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_atom_chiral_undef = INT(name=u'atom-chiral-undef', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_bond_chiral = INT(name=u'bond-chiral', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_bond_chiral_def = INT(name=u'bond-chiral-def', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_bond_chiral_undef = INT(name=u'bond-chiral-undef', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_isotope_atom = INT(name=u'isotope-atom', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_covalent_unit = INT(name=u'covalent-unit', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Count_tautomers = INT(name=u'tautomers', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_Count._cont = ASN1Dict([ (u'heavy-atom', _PC_Count_heavy_atom), (u'atom-chiral', _PC_Count_atom_chiral), (u'atom-chiral-def', _PC_Count_atom_chiral_def), (u'atom-chiral-undef', _PC_Count_atom_chiral_undef), (u'bond-chiral', _PC_Count_bond_chiral), (u'bond-chiral-def', _PC_Count_bond_chiral_def), (u'bond-chiral-undef', _PC_Count_bond_chiral_undef), (u'isotope-atom', _PC_Count_isotope_atom), (u'covalent-unit', _PC_Count_covalent_unit), (u'tautomers', _PC_Count_tautomers), ]) PC_Count._ext = None #-----< PC-StereoGroup >-----# PC_StereoGroup = SEQ(name=u'PC-StereoGroup', mode=MODE_TYPE) _PC_StereoGroup_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoGroup_type._cont = ASN1Dict([(u'absolute', 1), (u'or', 2), (u'and', 3), (u'unknown', 255)]) _PC_StereoGroup_aid = SEQ_OF(name=u'aid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_StereoGroup_aid__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_StereoGroup_aid._cont = __PC_StereoGroup_aid__item_ PC_StereoGroup._cont = ASN1Dict([ (u'type', _PC_StereoGroup_type), (u'aid', _PC_StereoGroup_aid), ]) PC_StereoGroup._ext = None #-----< PC-InfoData >-----# PC_InfoData = SEQ(name=u'PC-InfoData', mode=MODE_TYPE) _PC_InfoData_urn = SEQ(name=u'urn', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Urn'))) _PC_InfoData_value = CHOICE(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __PC_InfoData_value_bval = BOOL(name=u'bval', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_InfoData_value_bvec = SEQ_OF(name=u'bvec', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_InfoData_value_bvec__item_ = BOOL(name='_item_', mode=MODE_TYPE) __PC_InfoData_value_bvec._cont = ___PC_InfoData_value_bvec__item_ __PC_InfoData_value_ival = INT(name=u'ival', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_InfoData_value_ivec = SEQ_OF(name=u'ivec', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_InfoData_value_ivec__item_ = INT(name='_item_', mode=MODE_TYPE) __PC_InfoData_value_ivec._cont = ___PC_InfoData_value_ivec__item_ __PC_InfoData_value_fval = REAL(name=u'fval', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) __PC_InfoData_value_fvec = SEQ_OF(name=u'fvec', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_InfoData_value_fvec__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) __PC_InfoData_value_fvec._cont = ___PC_InfoData_value_fvec__item_ __PC_InfoData_value_sval = STR_VIS(name=u'sval', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_InfoData_value_slist = SEQ_OF(name=u'slist', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___PC_InfoData_value_slist__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) __PC_InfoData_value_slist._cont = ___PC_InfoData_value_slist__item_ __PC_InfoData_value_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) __PC_InfoData_value_binary = OCT_STR(name=u'binary', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_InfoData_value_bitlist = BIT_STR(name=u'bitlist', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_InfoData_value._cont = ASN1Dict([ (u'bval', __PC_InfoData_value_bval), (u'bvec', __PC_InfoData_value_bvec), (u'ival', __PC_InfoData_value_ival), (u'ivec', __PC_InfoData_value_ivec), (u'fval', __PC_InfoData_value_fval), (u'fvec', __PC_InfoData_value_fvec), (u'sval', __PC_InfoData_value_sval), (u'slist', __PC_InfoData_value_slist), (u'date', __PC_InfoData_value_date), (u'binary', __PC_InfoData_value_binary), (u'bitlist', __PC_InfoData_value_bitlist), ]) _PC_InfoData_value._ext = None PC_InfoData._cont = ASN1Dict([ (u'urn', _PC_InfoData_urn), (u'value', _PC_InfoData_value), ]) PC_InfoData._ext = None #-----< PC-Urn >-----# PC_Urn = SEQ(name=u'PC-Urn', mode=MODE_TYPE) _PC_Urn_label = STR_VIS(name=u'label', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_Urn_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Urn_datatype = INT(name=u'datatype', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-UrnDataType')), opt=True) _PC_Urn_parameters = STR_VIS(name=u'parameters', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Urn_implementation = STR_VIS(name=u'implementation', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Urn_version = STR_VIS(name=u'version', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Urn_software = STR_VIS(name=u'software', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Urn_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_Urn_release = STR_VIS(name=u'release', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) PC_Urn._cont = ASN1Dict([ (u'label', _PC_Urn_label), (u'name', _PC_Urn_name), (u'datatype', _PC_Urn_datatype), (u'parameters', _PC_Urn_parameters), (u'implementation', _PC_Urn_implementation), (u'version', _PC_Urn_version), (u'software', _PC_Urn_software), (u'source', _PC_Urn_source), (u'release', _PC_Urn_release), ]) PC_Urn._ext = None #-----< PC-UrnDataType >-----# PC_UrnDataType = INT(name=u'PC-UrnDataType', mode=MODE_TYPE) PC_UrnDataType._cont = ASN1Dict([(u'string', 1), (u'stringlist', 2), (u'int', 3), (u'intvec', 4), (u'uint', 5), (u'uintvec', 6), (u'double', 7), (u'doublevec', 8), (u'bool', 9), (u'boolvec', 10), (u'uint64', 11), (u'binary', 12), (u'url', 13), (u'unicode', 14), (u'date', 15), (u'fingerprint', 16), (u'unknown', 255)]) #-----< PC-Coordinates >-----# PC_Coordinates = SEQ(name=u'PC-Coordinates', mode=MODE_TYPE) _PC_Coordinates_type = SEQ_OF(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Coordinates_type__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-CoordinateType'))) _PC_Coordinates_type._cont = __PC_Coordinates_type__item_ _PC_Coordinates_aid = SEQ_OF(name=u'aid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Coordinates_aid__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_Coordinates_aid._cont = __PC_Coordinates_aid__item_ _PC_Coordinates_conformers = SEQ_OF(name=u'conformers', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Coordinates_conformers__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Conformer'))) _PC_Coordinates_conformers._cont = __PC_Coordinates_conformers__item_ _PC_Coordinates_atomlabels = SEQ_OF(name=u'atomlabels', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Coordinates_atomlabels__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomString'))) _PC_Coordinates_atomlabels._cont = __PC_Coordinates_atomlabels__item_ _PC_Coordinates_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Coordinates_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-InfoData'))) _PC_Coordinates_data._cont = __PC_Coordinates_data__item_ PC_Coordinates._cont = ASN1Dict([ (u'type', _PC_Coordinates_type), (u'aid', _PC_Coordinates_aid), (u'conformers', _PC_Coordinates_conformers), (u'atomlabels', _PC_Coordinates_atomlabels), (u'data', _PC_Coordinates_data), ]) PC_Coordinates._ext = None #-----< PC-Conformer >-----# PC_Conformer = SEQ(name=u'PC-Conformer', mode=MODE_TYPE) _PC_Conformer_x = SEQ_OF(name=u'x', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Conformer_x__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PC_Conformer_x._cont = __PC_Conformer_x__item_ _PC_Conformer_y = SEQ_OF(name=u'y', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Conformer_y__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PC_Conformer_y._cont = __PC_Conformer_y__item_ _PC_Conformer_z = SEQ_OF(name=u'z', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Conformer_z__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PC_Conformer_z._cont = __PC_Conformer_z__item_ _PC_Conformer_style = SEQ(name=u'style', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-DrawAnnotations')), opt=True) _PC_Conformer_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Conformer_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-InfoData'))) _PC_Conformer_data._cont = __PC_Conformer_data__item_ PC_Conformer._cont = ASN1Dict([ (u'x', _PC_Conformer_x), (u'y', _PC_Conformer_y), (u'z', _PC_Conformer_z), (u'style', _PC_Conformer_style), (u'data', _PC_Conformer_data), ]) PC_Conformer._ext = None #-----< PC-Conformers >-----# PC_Conformers = SEQ_OF(name=u'PC-Conformers', mode=MODE_TYPE) _PC_Conformers__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Conformer'))) PC_Conformers._cont = _PC_Conformers__item_ #-----< PC-CoordinateType >-----# PC_CoordinateType = INT(name=u'PC-CoordinateType', mode=MODE_TYPE) PC_CoordinateType._cont = ASN1Dict([(u'twod', 1), (u'threed', 2), (u'submitted', 3), (u'experimental', 4), (u'computed', 5), (u'standardized', 6), (u'augmented', 7), (u'aligned', 8), (u'compact', 9), (u'units-angstroms', 10), (u'units-nanometers', 11), (u'units-pixel', 12), (u'units-points', 13), (u'units-stdbonds', 14), (u'units-unknown', 255)]) #-----< PC-DrawAnnotations >-----# PC_DrawAnnotations = SEQ(name=u'PC-DrawAnnotations', mode=MODE_TYPE) _PC_DrawAnnotations_annotation = SEQ_OF(name=u'annotation', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_DrawAnnotations_annotation__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-BondAnnotation'))) _PC_DrawAnnotations_annotation._cont = __PC_DrawAnnotations_annotation__item_ _PC_DrawAnnotations_aid1 = SEQ_OF(name=u'aid1', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_DrawAnnotations_aid1__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_DrawAnnotations_aid1._cont = __PC_DrawAnnotations_aid1__item_ _PC_DrawAnnotations_aid2 = SEQ_OF(name=u'aid2', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_DrawAnnotations_aid2__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_DrawAnnotations_aid2._cont = __PC_DrawAnnotations_aid2__item_ PC_DrawAnnotations._cont = ASN1Dict([ (u'annotation', _PC_DrawAnnotations_annotation), (u'aid1', _PC_DrawAnnotations_aid1), (u'aid2', _PC_DrawAnnotations_aid2), ]) PC_DrawAnnotations._ext = None #-----< PC-BondAnnotation >-----# PC_BondAnnotation = INT(name=u'PC-BondAnnotation', mode=MODE_TYPE) PC_BondAnnotation._cont = ASN1Dict([(u'crossed', 1), (u'dashed', 2), (u'wavy', 3), (u'dotted', 4), (u'wedge-up', 5), (u'wedge-down', 6), (u'arrow', 7), (u'aromatic', 8), (u'resonance', 9), (u'bold', 10), (u'fischer', 11), (u'closeContact', 12), (u'unknown', 255)]) #-----< PC-Atoms >-----# PC_Atoms = SEQ(name=u'PC-Atoms', mode=MODE_TYPE) _PC_Atoms_aid = SEQ_OF(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Atoms_aid__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_Atoms_aid._cont = __PC_Atoms_aid__item_ _PC_Atoms_element = SEQ_OF(name=u'element', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Atoms_element__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-Element'))) _PC_Atoms_element._cont = __PC_Atoms_element__item_ _PC_Atoms_label = SEQ_OF(name=u'label', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Atoms_label__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomString'))) _PC_Atoms_label._cont = __PC_Atoms_label__item_ _PC_Atoms_isotope = SEQ_OF(name=u'isotope', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Atoms_isotope__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomInt'))) _PC_Atoms_isotope._cont = __PC_Atoms_isotope__item_ _PC_Atoms_charge = SEQ_OF(name=u'charge', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Atoms_charge__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomInt'))) _PC_Atoms_charge._cont = __PC_Atoms_charge__item_ _PC_Atoms_radical = SEQ_OF(name=u'radical', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Atoms_radical__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomRadical'))) _PC_Atoms_radical._cont = __PC_Atoms_radical__item_ _PC_Atoms_source = SEQ_OF(name=u'source', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Atoms_source__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomSource'))) _PC_Atoms_source._cont = __PC_Atoms_source__item_ _PC_Atoms_comment = SEQ_OF(name=u'comment', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PC_Atoms_comment__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-AtomString'))) _PC_Atoms_comment._cont = __PC_Atoms_comment__item_ PC_Atoms._cont = ASN1Dict([ (u'aid', _PC_Atoms_aid), (u'element', _PC_Atoms_element), (u'label', _PC_Atoms_label), (u'isotope', _PC_Atoms_isotope), (u'charge', _PC_Atoms_charge), (u'radical', _PC_Atoms_radical), (u'source', _PC_Atoms_source), (u'comment', _PC_Atoms_comment), ]) PC_Atoms._ext = None #-----< PC-AtomSource >-----# PC_AtomSource = SEQ(name=u'PC-AtomSource', mode=MODE_TYPE) _PC_AtomSource_aid = INT(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AtomSource_source = SEQ(name=u'source', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-MMDBSource'))) PC_AtomSource._cont = ASN1Dict([ (u'aid', _PC_AtomSource_aid), (u'source', _PC_AtomSource_source), ]) PC_AtomSource._ext = None #-----< PC-AtomInt >-----# PC_AtomInt = SEQ(name=u'PC-AtomInt', mode=MODE_TYPE) _PC_AtomInt_aid = INT(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AtomInt_value = INT(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_AtomInt._cont = ASN1Dict([ (u'aid', _PC_AtomInt_aid), (u'value', _PC_AtomInt_value), ]) PC_AtomInt._ext = None #-----< PC-AtomString >-----# PC_AtomString = SEQ(name=u'PC-AtomString', mode=MODE_TYPE) _PC_AtomString_aid = INT(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AtomString_value = STR_VIS(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_AtomString._cont = ASN1Dict([ (u'aid', _PC_AtomString_aid), (u'value', _PC_AtomString_value), ]) PC_AtomString._ext = None #-----< PC-AtomRadical >-----# PC_AtomRadical = SEQ(name=u'PC-AtomRadical', mode=MODE_TYPE) _PC_AtomRadical_aid = INT(name=u'aid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AtomRadical_type = INT(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_AtomRadical_type._cont = ASN1Dict([(u'singlet', 1), (u'doublet', 2), (u'triplet', 3), (u'quartet', 4), (u'quintet', 5), (u'hextet', 6), (u'heptet', 7), (u'octet', 8), (u'none', 255)]) PC_AtomRadical._cont = ASN1Dict([ (u'aid', _PC_AtomRadical_aid), (u'type', _PC_AtomRadical_type), ]) PC_AtomRadical._ext = None #-----< PC-Element >-----# PC_Element = INT(name=u'PC-Element', mode=MODE_TYPE) PC_Element._cont = ASN1Dict([(u'a', 255), (u'd', 254), (u'r', 253), (u'lp', 252), (u'h', 1), (u'he', 2), (u'li', 3), (u'be', 4), (u'b', 5), (u'c', 6), (u'n', 7), (u'o', 8), (u'f', 9), (u'ne', 10), (u'na', 11), (u'mg', 12), (u'al', 13), (u'si', 14), (u'p', 15), (u's', 16), (u'cl', 17), (u'ar', 18), (u'k', 19), (u'ca', 20), (u'sc', 21), (u'ti', 22), (u'v', 23), (u'cr', 24), (u'mn', 25), (u'fe', 26), (u'co', 27), (u'ni', 28), (u'cu', 29), (u'zn', 30), (u'ga', 31), (u'ge', 32), (u'as', 33), (u'se', 34), (u'br', 35), (u'kr', 36), (u'rb', 37), (u'sr', 38), (u'y', 39), (u'zr', 40), (u'nb', 41), (u'mo', 42), (u'tc', 43), (u'ru', 44), (u'rh', 45), (u'pd', 46), (u'ag', 47), (u'cd', 48), (u'in', 49), (u'sn', 50), (u'sb', 51), (u'te', 52), (u'i', 53), (u'xe', 54), (u'cs', 55), (u'ba', 56), (u'la', 57), (u'ce', 58), (u'pr', 59), (u'nd', 60), (u'pm', 61), (u'sm', 62), (u'eu', 63), (u'gd', 64), (u'tb', 65), (u'dy', 66), (u'ho', 67), (u'er', 68), (u'tm', 69), (u'yb', 70), (u'lu', 71), (u'hf', 72), (u'ta', 73), (u'w', 74), (u're', 75), (u'os', 76), (u'ir', 77), (u'pt', 78), (u'au', 79), (u'hg', 80), (u'tl', 81), (u'pb', 82), (u'bi', 83), (u'po', 84), (u'at', 85), (u'rn', 86), (u'fr', 87), (u'ra', 88), (u'ac', 89), (u'th', 90), (u'pa', 91), (u'u', 92), (u'np', 93), (u'pu', 94), (u'am', 95), (u'cm', 96), (u'bk', 97), (u'cf', 98), (u'es', 99), (u'fm', 100), (u'md', 101), (u'no', 102), (u'lr', 103), (u'rf', 104), (u'db', 105), (u'sg', 106), (u'bh', 107), (u'hs', 108), (u'mt', 109), (u'ds', 110), (u'rg', 111)]) #-----< PC-Bonds >-----# PC_Bonds = SEQ(name=u'PC-Bonds', mode=MODE_TYPE) _PC_Bonds_aid1 = SEQ_OF(name=u'aid1', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Bonds_aid1__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_Bonds_aid1._cont = __PC_Bonds_aid1__item_ _PC_Bonds_aid2 = SEQ_OF(name=u'aid2', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Bonds_aid2__item_ = INT(name='_item_', mode=MODE_TYPE) _PC_Bonds_aid2._cont = __PC_Bonds_aid2__item_ _PC_Bonds_order = SEQ_OF(name=u'order', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PC_Bonds_order__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-BondType'))) _PC_Bonds_order._cont = __PC_Bonds_order__item_ PC_Bonds._cont = ASN1Dict([ (u'aid1', _PC_Bonds_aid1), (u'aid2', _PC_Bonds_aid2), (u'order', _PC_Bonds_order), ]) PC_Bonds._ext = None #-----< PC-BondType >-----# PC_BondType = INT(name=u'PC-BondType', mode=MODE_TYPE) PC_BondType._cont = ASN1Dict([(u'single', 1), (u'double', 2), (u'triple', 3), (u'quadruple', 4), (u'dative', 5), (u'complex', 6), (u'ionic', 7), (u'unknown', 255)]) #-----< PC-StereoCenter >-----# PC_StereoCenter = CHOICE(name=u'PC-StereoCenter', mode=MODE_TYPE) _PC_StereoCenter_tetrahedral = SEQ(name=u'tetrahedral', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoTetrahedral'))) _PC_StereoCenter_planar = SEQ(name=u'planar', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoPlanar'))) _PC_StereoCenter_squareplanar = SEQ(name=u'squareplanar', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoSquarePlanar'))) _PC_StereoCenter_octahedral = SEQ(name=u'octahedral', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoOctahedral'))) _PC_StereoCenter_bipyramid = SEQ(name=u'bipyramid', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoTrigonalBiPyramid'))) _PC_StereoCenter_tshape = SEQ(name=u'tshape', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoTShape'))) _PC_StereoCenter_pentagonal = SEQ(name=u'pentagonal', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-PCSubstance', 'PC-StereoPentagonalBiPyramid'))) PC_StereoCenter._cont = ASN1Dict([ (u'tetrahedral', _PC_StereoCenter_tetrahedral), (u'planar', _PC_StereoCenter_planar), (u'squareplanar', _PC_StereoCenter_squareplanar), (u'octahedral', _PC_StereoCenter_octahedral), (u'bipyramid', _PC_StereoCenter_bipyramid), (u'tshape', _PC_StereoCenter_tshape), (u'pentagonal', _PC_StereoCenter_pentagonal), ]) PC_StereoCenter._ext = None #-----< PC-StereoTetrahedral >-----# PC_StereoTetrahedral = SEQ(name=u'PC-StereoTetrahedral', mode=MODE_TYPE) _PC_StereoTetrahedral_center = INT(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTetrahedral_above = INT(name=u'above', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTetrahedral_top = INT(name=u'top', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTetrahedral_bottom = INT(name=u'bottom', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTetrahedral_below = INT(name=u'below', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTetrahedral_parity = INT(name=u'parity', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_StereoTetrahedral_parity._cont = ASN1Dict([(u'clockwise', 1), (u'counterclockwise', 2), (u'any', 3), (u'unknown', 255)]) _PC_StereoTetrahedral_type = INT(name=u'type', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_StereoTetrahedral_type._cont = ASN1Dict([(u'tetrahedral', 1), (u'cumulenic', 2), (u'biaryl', 3)]) PC_StereoTetrahedral._cont = ASN1Dict([ (u'center', _PC_StereoTetrahedral_center), (u'above', _PC_StereoTetrahedral_above), (u'top', _PC_StereoTetrahedral_top), (u'bottom', _PC_StereoTetrahedral_bottom), (u'below', _PC_StereoTetrahedral_below), (u'parity', _PC_StereoTetrahedral_parity), (u'type', _PC_StereoTetrahedral_type), ]) PC_StereoTetrahedral._ext = None #-----< PC-StereoPlanar >-----# PC_StereoPlanar = SEQ(name=u'PC-StereoPlanar', mode=MODE_TYPE) _PC_StereoPlanar_left = INT(name=u'left', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPlanar_ltop = INT(name=u'ltop', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPlanar_lbottom = INT(name=u'lbottom', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPlanar_right = INT(name=u'right', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPlanar_rtop = INT(name=u'rtop', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPlanar_rbottom = INT(name=u'rbottom', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPlanar_parity = INT(name=u'parity', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_StereoPlanar_parity._cont = ASN1Dict([(u'same', 1), (u'opposite', 2), (u'any', 3), (u'unknown', 255)]) _PC_StereoPlanar_type = INT(name=u'type', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_StereoPlanar_type._cont = ASN1Dict([(u'planar', 1), (u'cumulenic', 2)]) PC_StereoPlanar._cont = ASN1Dict([ (u'left', _PC_StereoPlanar_left), (u'ltop', _PC_StereoPlanar_ltop), (u'lbottom', _PC_StereoPlanar_lbottom), (u'right', _PC_StereoPlanar_right), (u'rtop', _PC_StereoPlanar_rtop), (u'rbottom', _PC_StereoPlanar_rbottom), (u'parity', _PC_StereoPlanar_parity), (u'type', _PC_StereoPlanar_type), ]) PC_StereoPlanar._ext = None #-----< PC-StereoSquarePlanar >-----# PC_StereoSquarePlanar = SEQ(name=u'PC-StereoSquarePlanar', mode=MODE_TYPE) _PC_StereoSquarePlanar_center = INT(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoSquarePlanar_lbelow = INT(name=u'lbelow', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoSquarePlanar_rbelow = INT(name=u'rbelow', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoSquarePlanar_labove = INT(name=u'labove', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoSquarePlanar_rabove = INT(name=u'rabove', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoSquarePlanar_parity = INT(name=u'parity', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PC_StereoSquarePlanar_parity._cont = ASN1Dict([(u'u-shape', 1), (u'z-shape', 2), (u'x-shape', 3), (u'any', 4), (u'unknown', 255)]) PC_StereoSquarePlanar._cont = ASN1Dict([ (u'center', _PC_StereoSquarePlanar_center), (u'lbelow', _PC_StereoSquarePlanar_lbelow), (u'rbelow', _PC_StereoSquarePlanar_rbelow), (u'labove', _PC_StereoSquarePlanar_labove), (u'rabove', _PC_StereoSquarePlanar_rabove), (u'parity', _PC_StereoSquarePlanar_parity), ]) PC_StereoSquarePlanar._ext = None #-----< PC-StereoOctahedral >-----# PC_StereoOctahedral = SEQ(name=u'PC-StereoOctahedral', mode=MODE_TYPE) _PC_StereoOctahedral_center = INT(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoOctahedral_top = INT(name=u'top', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoOctahedral_bottom = INT(name=u'bottom', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoOctahedral_labove = INT(name=u'labove', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoOctahedral_lbelow = INT(name=u'lbelow', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoOctahedral_rabove = INT(name=u'rabove', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoOctahedral_rbelow = INT(name=u'rbelow', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_StereoOctahedral._cont = ASN1Dict([ (u'center', _PC_StereoOctahedral_center), (u'top', _PC_StereoOctahedral_top), (u'bottom', _PC_StereoOctahedral_bottom), (u'labove', _PC_StereoOctahedral_labove), (u'lbelow', _PC_StereoOctahedral_lbelow), (u'rabove', _PC_StereoOctahedral_rabove), (u'rbelow', _PC_StereoOctahedral_rbelow), ]) PC_StereoOctahedral._ext = None #-----< PC-StereoTrigonalBiPyramid >-----# PC_StereoTrigonalBiPyramid = SEQ(name=u'PC-StereoTrigonalBiPyramid', mode=MODE_TYPE) _PC_StereoTrigonalBiPyramid_center = INT(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTrigonalBiPyramid_above = INT(name=u'above', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTrigonalBiPyramid_below = INT(name=u'below', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTrigonalBiPyramid_top = INT(name=u'top', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTrigonalBiPyramid_bottom = INT(name=u'bottom', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTrigonalBiPyramid_right = INT(name=u'right', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_StereoTrigonalBiPyramid._cont = ASN1Dict([ (u'center', _PC_StereoTrigonalBiPyramid_center), (u'above', _PC_StereoTrigonalBiPyramid_above), (u'below', _PC_StereoTrigonalBiPyramid_below), (u'top', _PC_StereoTrigonalBiPyramid_top), (u'bottom', _PC_StereoTrigonalBiPyramid_bottom), (u'right', _PC_StereoTrigonalBiPyramid_right), ]) PC_StereoTrigonalBiPyramid._ext = None #-----< PC-StereoTShape >-----# PC_StereoTShape = SEQ(name=u'PC-StereoTShape', mode=MODE_TYPE) _PC_StereoTShape_center = INT(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTShape_top = INT(name=u'top', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTShape_bottom = INT(name=u'bottom', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoTShape_above = INT(name=u'above', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_StereoTShape._cont = ASN1Dict([ (u'center', _PC_StereoTShape_center), (u'top', _PC_StereoTShape_top), (u'bottom', _PC_StereoTShape_bottom), (u'above', _PC_StereoTShape_above), ]) PC_StereoTShape._ext = None #-----< PC-StereoPentagonalBiPyramid >-----# PC_StereoPentagonalBiPyramid = SEQ(name=u'PC-StereoPentagonalBiPyramid', mode=MODE_TYPE) _PC_StereoPentagonalBiPyramid_center = INT(name=u'center', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_top = INT(name=u'top', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_bottom = INT(name=u'bottom', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_left = INT(name=u'left', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_labove = INT(name=u'labove', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_lbelow = INT(name=u'lbelow', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_rabove = INT(name=u'rabove', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PC_StereoPentagonalBiPyramid_rbelow = INT(name=u'rbelow', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) PC_StereoPentagonalBiPyramid._cont = ASN1Dict([ (u'center', _PC_StereoPentagonalBiPyramid_center), (u'top', _PC_StereoPentagonalBiPyramid_top), (u'bottom', _PC_StereoPentagonalBiPyramid_bottom), (u'left', _PC_StereoPentagonalBiPyramid_left), (u'labove', _PC_StereoPentagonalBiPyramid_labove), (u'lbelow', _PC_StereoPentagonalBiPyramid_lbelow), (u'rabove', _PC_StereoPentagonalBiPyramid_rabove), (u'rbelow', _PC_StereoPentagonalBiPyramid_rbelow), ]) PC_StereoPentagonalBiPyramid._ext = None _all_ = [ _PC_Substance_sid, _PC_Substance_source, __PC_Substance_pub__item_, _PC_Substance_pub, __PC_Substance_synonyms__item_, _PC_Substance_synonyms, __PC_Substance_comment__item_, _PC_Substance_comment, __PC_Substance_xref__item_, _PC_Substance_xref, _PC_Substance_compound, PC_Substance, _PC_Substances__item_, PC_Substances, _PC_ID_id, _PC_ID_version, PC_ID, _PC_Source_individual, _PC_Source_db, _PC_Source_mmdb, PC_Source, _PC_DBTracking_name, _PC_DBTracking_source_id, _PC_DBTracking_date, _PC_DBTracking_description, _PC_DBTracking_pub, PC_DBTracking, _PC_MMDBSource_mmdb_id, _PC_MMDBSource_molecule_id, __PC_MMDBSource_molecule_name__item_, _PC_MMDBSource_molecule_name, _PC_MMDBSource_residue_id, _PC_MMDBSource_residue_name, _PC_MMDBSource_atom_id, _PC_MMDBSource_atom_name, PC_MMDBSource, _PC_XRefData_regid, _PC_XRefData_rn, _PC_XRefData_mesh, _PC_XRefData_pmid, _PC_XRefData_gi, _PC_XRefData_mmdb, _PC_XRefData_sid, _PC_XRefData_cid, _PC_XRefData_dburl, _PC_XRefData_sburl, _PC_XRefData_asurl, _PC_XRefData_protein_gi, _PC_XRefData_nucleotide_gi, _PC_XRefData_taxonomy, _PC_XRefData_aid, _PC_XRefData_mim, _PC_XRefData_gene, _PC_XRefData_probe, _PC_XRefData_biosystem, _PC_XRefData_geogse, _PC_XRefData_geogsm, _PC_XRefData_patent, PC_XRefData, _PC_Compound_id, _PC_Compound_atoms, _PC_Compound_bonds, __PC_Compound_stereo__item_, _PC_Compound_stereo, __PC_Compound_coords__item_, _PC_Compound_coords, _PC_Compound_charge, __PC_Compound_props__item_, _PC_Compound_props, __PC_Compound_stereogroups__item_, _PC_Compound_stereogroups, _PC_Compound_count, _PC_Compound_vbalt, PC_Compound, _PC_Compounds__item_, PC_Compounds, _PC_CompoundType_type, __PC_CompoundType_id_cid, __PC_CompoundType_id_sid, __PC_CompoundType_id_xid, _PC_CompoundType_id, PC_CompoundType, _PC_Count_heavy_atom, _PC_Count_atom_chiral, _PC_Count_atom_chiral_def, _PC_Count_atom_chiral_undef, _PC_Count_bond_chiral, _PC_Count_bond_chiral_def, _PC_Count_bond_chiral_undef, _PC_Count_isotope_atom, _PC_Count_covalent_unit, _PC_Count_tautomers, PC_Count, _PC_StereoGroup_type, __PC_StereoGroup_aid__item_, _PC_StereoGroup_aid, PC_StereoGroup, _PC_InfoData_urn, __PC_InfoData_value_bval, ___PC_InfoData_value_bvec__item_, __PC_InfoData_value_bvec, __PC_InfoData_value_ival, ___PC_InfoData_value_ivec__item_, __PC_InfoData_value_ivec, __PC_InfoData_value_fval, ___PC_InfoData_value_fvec__item_, __PC_InfoData_value_fvec, __PC_InfoData_value_sval, ___PC_InfoData_value_slist__item_, __PC_InfoData_value_slist, __PC_InfoData_value_date, __PC_InfoData_value_binary, __PC_InfoData_value_bitlist, _PC_InfoData_value, PC_InfoData, _PC_Urn_label, _PC_Urn_name, _PC_Urn_datatype, _PC_Urn_parameters, _PC_Urn_implementation, _PC_Urn_version, _PC_Urn_software, _PC_Urn_source, _PC_Urn_release, PC_Urn, PC_UrnDataType, __PC_Coordinates_type__item_, _PC_Coordinates_type, __PC_Coordinates_aid__item_, _PC_Coordinates_aid, __PC_Coordinates_conformers__item_, _PC_Coordinates_conformers, __PC_Coordinates_atomlabels__item_, _PC_Coordinates_atomlabels, __PC_Coordinates_data__item_, _PC_Coordinates_data, PC_Coordinates, __PC_Conformer_x__item_, _PC_Conformer_x, __PC_Conformer_y__item_, _PC_Conformer_y, __PC_Conformer_z__item_, _PC_Conformer_z, _PC_Conformer_style, __PC_Conformer_data__item_, _PC_Conformer_data, PC_Conformer, _PC_Conformers__item_, PC_Conformers, PC_CoordinateType, __PC_DrawAnnotations_annotation__item_, _PC_DrawAnnotations_annotation, __PC_DrawAnnotations_aid1__item_, _PC_DrawAnnotations_aid1, __PC_DrawAnnotations_aid2__item_, _PC_DrawAnnotations_aid2, PC_DrawAnnotations, PC_BondAnnotation, __PC_Atoms_aid__item_, _PC_Atoms_aid, __PC_Atoms_element__item_, _PC_Atoms_element, __PC_Atoms_label__item_, _PC_Atoms_label, __PC_Atoms_isotope__item_, _PC_Atoms_isotope, __PC_Atoms_charge__item_, _PC_Atoms_charge, __PC_Atoms_radical__item_, _PC_Atoms_radical, __PC_Atoms_source__item_, _PC_Atoms_source, __PC_Atoms_comment__item_, _PC_Atoms_comment, PC_Atoms, _PC_AtomSource_aid, _PC_AtomSource_source, PC_AtomSource, _PC_AtomInt_aid, _PC_AtomInt_value, PC_AtomInt, _PC_AtomString_aid, _PC_AtomString_value, PC_AtomString, _PC_AtomRadical_aid, _PC_AtomRadical_type, PC_AtomRadical, PC_Element, __PC_Bonds_aid1__item_, _PC_Bonds_aid1, __PC_Bonds_aid2__item_, _PC_Bonds_aid2, __PC_Bonds_order__item_, _PC_Bonds_order, PC_Bonds, PC_BondType, _PC_StereoCenter_tetrahedral, _PC_StereoCenter_planar, _PC_StereoCenter_squareplanar, _PC_StereoCenter_octahedral, _PC_StereoCenter_bipyramid, _PC_StereoCenter_tshape, _PC_StereoCenter_pentagonal, PC_StereoCenter, _PC_StereoTetrahedral_center, _PC_StereoTetrahedral_above, _PC_StereoTetrahedral_top, _PC_StereoTetrahedral_bottom, _PC_StereoTetrahedral_below, _PC_StereoTetrahedral_parity, _PC_StereoTetrahedral_type, PC_StereoTetrahedral, _PC_StereoPlanar_left, _PC_StereoPlanar_ltop, _PC_StereoPlanar_lbottom, _PC_StereoPlanar_right, _PC_StereoPlanar_rtop, _PC_StereoPlanar_rbottom, _PC_StereoPlanar_parity, _PC_StereoPlanar_type, PC_StereoPlanar, _PC_StereoSquarePlanar_center, _PC_StereoSquarePlanar_lbelow, _PC_StereoSquarePlanar_rbelow, _PC_StereoSquarePlanar_labove, _PC_StereoSquarePlanar_rabove, _PC_StereoSquarePlanar_parity, PC_StereoSquarePlanar, _PC_StereoOctahedral_center, _PC_StereoOctahedral_top, _PC_StereoOctahedral_bottom, _PC_StereoOctahedral_labove, _PC_StereoOctahedral_lbelow, _PC_StereoOctahedral_rabove, _PC_StereoOctahedral_rbelow, PC_StereoOctahedral, _PC_StereoTrigonalBiPyramid_center, _PC_StereoTrigonalBiPyramid_above, _PC_StereoTrigonalBiPyramid_below, _PC_StereoTrigonalBiPyramid_top, _PC_StereoTrigonalBiPyramid_bottom, _PC_StereoTrigonalBiPyramid_right, PC_StereoTrigonalBiPyramid, _PC_StereoTShape_center, _PC_StereoTShape_top, _PC_StereoTShape_bottom, _PC_StereoTShape_above, PC_StereoTShape, _PC_StereoPentagonalBiPyramid_center, _PC_StereoPentagonalBiPyramid_top, _PC_StereoPentagonalBiPyramid_bottom, _PC_StereoPentagonalBiPyramid_left, _PC_StereoPentagonalBiPyramid_labove, _PC_StereoPentagonalBiPyramid_lbelow, _PC_StereoPentagonalBiPyramid_rabove, _PC_StereoPentagonalBiPyramid_rbelow, PC_StereoPentagonalBiPyramid, ] class NCBI_Project: _name_ = u'NCBI-Project' _oid_ = [] _obj_ = [ u'Project', u'Project-item', u'Project-descr', u'Projdesc', u'Project-id', ] _type_ = [ u'Project', u'Project-item', u'Project-descr', u'Projdesc', u'Project-id', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Project >-----# Project = SEQ(name=u'Project', mode=MODE_TYPE) _Project_descr = SEQ(name=u'descr', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Project', 'Project-descr')), opt=True) _Project_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Project', 'Project-item'))) Project._cont = ASN1Dict([ (u'descr', _Project_descr), (u'data', _Project_data), ]) Project._ext = None #-----< Project-item >-----# Project_item = CHOICE(name=u'Project-item', mode=MODE_TYPE) _Project_item_pmuid = SET_OF(name=u'pmuid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_pmuid__item_ = INT(name='_item_', mode=MODE_TYPE) _Project_item_pmuid._cont = __Project_item_pmuid__item_ _Project_item_protuid = SET_OF(name=u'protuid', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_protuid__item_ = INT(name='_item_', mode=MODE_TYPE) _Project_item_protuid._cont = __Project_item_protuid__item_ _Project_item_nucuid = SET_OF(name=u'nucuid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_nucuid__item_ = INT(name='_item_', mode=MODE_TYPE) _Project_item_nucuid._cont = __Project_item_nucuid__item_ _Project_item_sequid = SET_OF(name=u'sequid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_sequid__item_ = INT(name='_item_', mode=MODE_TYPE) _Project_item_sequid._cont = __Project_item_sequid__item_ _Project_item_genomeuid = SET_OF(name=u'genomeuid', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_genomeuid__item_ = INT(name='_item_', mode=MODE_TYPE) _Project_item_genomeuid._cont = __Project_item_genomeuid__item_ _Project_item_structuid = SET_OF(name=u'structuid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_structuid__item_ = INT(name='_item_', mode=MODE_TYPE) _Project_item_structuid._cont = __Project_item_structuid__item_ _Project_item_pmid = SET_OF(name=u'pmid', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_pmid__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Project_item_pmid._cont = __Project_item_pmid__item_ _Project_item_protid = SET_OF(name=u'protid', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_protid__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Project_item_protid._cont = __Project_item_protid__item_ _Project_item_nucid = SET_OF(name=u'nucid', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_nucid__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Project_item_nucid._cont = __Project_item_nucid__item_ _Project_item_seqid = SET_OF(name=u'seqid', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_seqid__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Project_item_seqid._cont = __Project_item_seqid__item_ _Project_item_genomeid = SET_OF(name=u'genomeid', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_genomeid__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Project_item_genomeid._cont = __Project_item_genomeid__item_ _Project_item_structid = NULL(name=u'structid', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Project_item_pment = SET_OF(name=u'pment', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_pment__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PubMed', 'Pubmed-entry'))) _Project_item_pment._cont = __Project_item_pment__item_ _Project_item_protent = SET_OF(name=u'protent', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_protent__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Project_item_protent._cont = __Project_item_protent__item_ _Project_item_nucent = SET_OF(name=u'nucent', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_nucent__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Project_item_nucent._cont = __Project_item_nucent__item_ _Project_item_seqent = SET_OF(name=u'seqent', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_seqent__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Project_item_seqent._cont = __Project_item_seqent__item_ _Project_item_genomeent = SET_OF(name=u'genomeent', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_genomeent__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Project_item_genomeent._cont = __Project_item_genomeent__item_ _Project_item_structent = NULL(name=u'structent', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Project_item_seqannot = SET_OF(name=u'seqannot', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_seqannot__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Project_item_seqannot._cont = __Project_item_seqannot__item_ _Project_item_loc = SET_OF(name=u'loc', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_loc__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Project_item_loc._cont = __Project_item_loc__item_ _Project_item_proj = SET_OF(name=u'proj', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_item_proj__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Project', 'Project'))) _Project_item_proj._cont = __Project_item_proj__item_ Project_item._cont = ASN1Dict([ (u'pmuid', _Project_item_pmuid), (u'protuid', _Project_item_protuid), (u'nucuid', _Project_item_nucuid), (u'sequid', _Project_item_sequid), (u'genomeuid', _Project_item_genomeuid), (u'structuid', _Project_item_structuid), (u'pmid', _Project_item_pmid), (u'protid', _Project_item_protid), (u'nucid', _Project_item_nucid), (u'seqid', _Project_item_seqid), (u'genomeid', _Project_item_genomeid), (u'structid', _Project_item_structid), (u'pment', _Project_item_pment), (u'protent', _Project_item_protent), (u'nucent', _Project_item_nucent), (u'seqent', _Project_item_seqent), (u'genomeent', _Project_item_genomeent), (u'structent', _Project_item_structent), (u'seqannot', _Project_item_seqannot), (u'loc', _Project_item_loc), (u'proj', _Project_item_proj), ]) Project_item._ext = None #-----< Project-descr >-----# Project_descr = SEQ(name=u'Project-descr', mode=MODE_TYPE) _Project_descr_id = SET_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Project_descr_id__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Project', 'Project-id'))) _Project_descr_id._cont = __Project_descr_id__item_ _Project_descr_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Project_descr_descr = SET_OF(name=u'descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Project_descr_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Project', 'Projdesc'))) _Project_descr_descr._cont = __Project_descr_descr__item_ Project_descr._cont = ASN1Dict([ (u'id', _Project_descr_id), (u'name', _Project_descr_name), (u'descr', _Project_descr_descr), ]) Project_descr._ext = None #-----< Projdesc >-----# Projdesc = CHOICE(name=u'Projdesc', mode=MODE_TYPE) _Projdesc_pub = SEQ(name=u'pub', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Pubdesc'))) _Projdesc_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Projdesc_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Projdesc_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Projdesc._cont = ASN1Dict([ (u'pub', _Projdesc_pub), (u'date', _Projdesc_date), (u'comment', _Projdesc_comment), (u'title', _Projdesc_title), ]) Projdesc._ext = None #-----< Project-id >-----# Project_id = STR_VIS(name=u'Project-id', mode=MODE_TYPE) _all_ = [ _Project_descr, _Project_data, Project, __Project_item_pmuid__item_, _Project_item_pmuid, __Project_item_protuid__item_, _Project_item_protuid, __Project_item_nucuid__item_, _Project_item_nucuid, __Project_item_sequid__item_, _Project_item_sequid, __Project_item_genomeuid__item_, _Project_item_genomeuid, __Project_item_structuid__item_, _Project_item_structuid, __Project_item_pmid__item_, _Project_item_pmid, __Project_item_protid__item_, _Project_item_protid, __Project_item_nucid__item_, _Project_item_nucid, __Project_item_seqid__item_, _Project_item_seqid, __Project_item_genomeid__item_, _Project_item_genomeid, _Project_item_structid, __Project_item_pment__item_, _Project_item_pment, __Project_item_protent__item_, _Project_item_protent, __Project_item_nucent__item_, _Project_item_nucent, __Project_item_seqent__item_, _Project_item_seqent, __Project_item_genomeent__item_, _Project_item_genomeent, _Project_item_structent, __Project_item_seqannot__item_, _Project_item_seqannot, __Project_item_loc__item_, _Project_item_loc, __Project_item_proj__item_, _Project_item_proj, Project_item, __Project_descr_id__item_, _Project_descr_id, _Project_descr_name, __Project_descr_descr__item_, _Project_descr_descr, Project_descr, _Projdesc_pub, _Projdesc_date, _Projdesc_comment, _Projdesc_title, Projdesc, Project_id, ] class NCBI_Pub: _name_ = u'NCBI-Pub' _oid_ = [] _obj_ = [ u'Pub', u'Pub-equiv', u'Pub-set', ] _type_ = [ u'Pub', u'Pub-equiv', u'Pub-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Pub >-----# Pub = CHOICE(name=u'Pub', mode=MODE_TYPE) _Pub_gen = SEQ(name=u'gen', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-gen'))) _Pub_sub = SEQ(name=u'sub', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-sub'))) _Pub_medline = SEQ(name=u'medline', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medline', 'Medline-entry'))) _Pub_muid = INT(name=u'muid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Pub_article = SEQ(name=u'article', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-art'))) _Pub_journal = SEQ(name=u'journal', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-jour'))) _Pub_book = SEQ(name=u'book', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-book'))) _Pub_proc = SEQ(name=u'proc', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-proc'))) _Pub_patent = SEQ(name=u'patent', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-pat'))) _Pub_pat_id = SEQ(name=u'pat-id', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Id-pat'))) _Pub_man = SEQ(name=u'man', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-let'))) _Pub_equiv = SET_OF(name=u'equiv', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub-equiv'))) _Pub_pmid = INT(name=u'pmid', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) Pub._cont = ASN1Dict([ (u'gen', _Pub_gen), (u'sub', _Pub_sub), (u'medline', _Pub_medline), (u'muid', _Pub_muid), (u'article', _Pub_article), (u'journal', _Pub_journal), (u'book', _Pub_book), (u'proc', _Pub_proc), (u'patent', _Pub_patent), (u'pat-id', _Pub_pat_id), (u'man', _Pub_man), (u'equiv', _Pub_equiv), (u'pmid', _Pub_pmid), ]) Pub._ext = None #-----< Pub-equiv >-----# Pub_equiv = SET_OF(name=u'Pub-equiv', mode=MODE_TYPE) _Pub_equiv__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) Pub_equiv._cont = _Pub_equiv__item_ #-----< Pub-set >-----# Pub_set = CHOICE(name=u'Pub-set', mode=MODE_TYPE) _Pub_set_pub = SET_OF(name=u'pub', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_pub__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Pub', 'Pub'))) _Pub_set_pub._cont = __Pub_set_pub__item_ _Pub_set_medline = SET_OF(name=u'medline', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_medline__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Medline', 'Medline-entry'))) _Pub_set_medline._cont = __Pub_set_medline__item_ _Pub_set_article = SET_OF(name=u'article', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_article__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Cit-art'))) _Pub_set_article._cont = __Pub_set_article__item_ _Pub_set_journal = SET_OF(name=u'journal', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_journal__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Cit-jour'))) _Pub_set_journal._cont = __Pub_set_journal__item_ _Pub_set_book = SET_OF(name=u'book', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_book__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Cit-book'))) _Pub_set_book._cont = __Pub_set_book__item_ _Pub_set_proc = SET_OF(name=u'proc', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_proc__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Cit-proc'))) _Pub_set_proc._cont = __Pub_set_proc__item_ _Pub_set_patent = SET_OF(name=u'patent', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Pub_set_patent__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'Cit-pat'))) _Pub_set_patent._cont = __Pub_set_patent__item_ Pub_set._cont = ASN1Dict([ (u'pub', _Pub_set_pub), (u'medline', _Pub_set_medline), (u'article', _Pub_set_article), (u'journal', _Pub_set_journal), (u'book', _Pub_set_book), (u'proc', _Pub_set_proc), (u'patent', _Pub_set_patent), ]) Pub_set._ext = None _all_ = [ _Pub_gen, _Pub_sub, _Pub_medline, _Pub_muid, _Pub_article, _Pub_journal, _Pub_book, _Pub_proc, _Pub_patent, _Pub_pat_id, _Pub_man, _Pub_equiv, _Pub_pmid, Pub, _Pub_equiv__item_, Pub_equiv, __Pub_set_pub__item_, _Pub_set_pub, __Pub_set_medline__item_, _Pub_set_medline, __Pub_set_article__item_, _Pub_set_article, __Pub_set_journal__item_, _Pub_set_journal, __Pub_set_book__item_, _Pub_set_book, __Pub_set_proc__item_, _Pub_set_proc, __Pub_set_patent__item_, _Pub_set_patent, Pub_set, ] class NCBI_PubMed: _name_ = u'NCBI-PubMed' _oid_ = [] _obj_ = [ u'Pubmed-entry', u'Pubmed-url', ] _type_ = [ u'Pubmed-entry', u'Pubmed-url', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Pubmed-entry >-----# Pubmed_entry = SEQ(name=u'Pubmed-entry', mode=MODE_TYPE) _Pubmed_entry_pmid = INT(name=u'pmid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _Pubmed_entry_medent = SEQ(name=u'medent', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Medline', 'Medline-entry')), opt=True) _Pubmed_entry_publisher = STR_VIS(name=u'publisher', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubmed_entry_urls = SET_OF(name=u'urls', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Pubmed_entry_urls__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-PubMed', 'Pubmed-url'))) _Pubmed_entry_urls._cont = __Pubmed_entry_urls__item_ _Pubmed_entry_pubid = STR_VIS(name=u'pubid', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Pubmed_entry._cont = ASN1Dict([ (u'pmid', _Pubmed_entry_pmid), (u'medent', _Pubmed_entry_medent), (u'publisher', _Pubmed_entry_publisher), (u'urls', _Pubmed_entry_urls), (u'pubid', _Pubmed_entry_pubid), ]) Pubmed_entry._ext = None #-----< Pubmed-url >-----# Pubmed_url = SEQ(name=u'Pubmed-url', mode=MODE_TYPE) _Pubmed_url_location = STR_VIS(name=u'location', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubmed_url_url = STR_VIS(name=u'url', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Pubmed_url._cont = ASN1Dict([ (u'location', _Pubmed_url_location), (u'url', _Pubmed_url_url), ]) Pubmed_url._ext = None _all_ = [ _Pubmed_entry_pmid, _Pubmed_entry_medent, _Pubmed_entry_publisher, __Pubmed_entry_urls__item_, _Pubmed_entry_urls, _Pubmed_entry_pubid, Pubmed_entry, _Pubmed_url_location, _Pubmed_url_url, Pubmed_url, ] class NCBI_Remap: _name_ = u'NCBI-Remap' _oid_ = [] _obj_ = [ u'Remap-dt', u'Remap-db-id', u'Remap-request', u'RMRequest', u'Remap-query', u'Remap-reply', u'RMReply', u'Remap-result', ] _type_ = [ u'Remap-dt', u'Remap-db-id', u'Remap-request', u'RMRequest', u'Remap-query', u'Remap-reply', u'RMReply', u'Remap-result', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Remap-dt >-----# Remap_dt = INT(name=u'Remap-dt', mode=MODE_TYPE) #-----< Remap-db-id >-----# Remap_db_id = STR_VIS(name=u'Remap-db-id', mode=MODE_TYPE) #-----< Remap-request >-----# Remap_request = SEQ(name=u'Remap-request', mode=MODE_TYPE) _Remap_request_request = CHOICE(name=u'request', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Remap', 'RMRequest'))) _Remap_request_version = INT(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Remap_request_tool = STR_VIS(name=u'tool', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Remap_request._cont = ASN1Dict([ (u'request', _Remap_request_request), (u'version', _Remap_request_version), (u'tool', _Remap_request_tool), ]) Remap_request._ext = None #-----< RMRequest >-----# RMRequest = CHOICE(name=u'RMRequest', mode=MODE_TYPE) _RMRequest_remap = SEQ(name=u'remap', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Remap', 'Remap-query'))) _RMRequest_maps_to_builds = STR_VIS(name=u'maps-to-builds', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RMRequest_maps_from_builds = STR_VIS(name=u'maps-from-builds', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RMRequest_all_builds = NULL(name=u'all-builds', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) RMRequest._cont = ASN1Dict([ (u'remap', _RMRequest_remap), (u'maps-to-builds', _RMRequest_maps_to_builds), (u'maps-from-builds', _RMRequest_maps_from_builds), (u'all-builds', _RMRequest_all_builds), ]) RMRequest._ext = None #-----< Remap-query >-----# Remap_query = SEQ(name=u'Remap-query', mode=MODE_TYPE) _Remap_query_from_build = STR_VIS(name=u'from-build', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Remap_query_to_build = STR_VIS(name=u'to-build', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Remap_query_locs = SEQ_OF(name=u'locs', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Remap_query_locs__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Remap_query_locs._cont = __Remap_query_locs__item_ Remap_query._cont = ASN1Dict([ (u'from-build', _Remap_query_from_build), (u'to-build', _Remap_query_to_build), (u'locs', _Remap_query_locs), ]) Remap_query._ext = None #-----< Remap-reply >-----# Remap_reply = SEQ(name=u'Remap-reply', mode=MODE_TYPE) _Remap_reply_reply = CHOICE(name=u'reply', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Remap', 'RMReply'))) _Remap_reply_dt = INT(name=u'dt', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Remap', 'Remap-dt'))) _Remap_reply_server = STR_VIS(name=u'server', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Remap_reply_msg = STR_VIS(name=u'msg', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Remap_reply._cont = ASN1Dict([ (u'reply', _Remap_reply_reply), (u'dt', _Remap_reply_dt), (u'server', _Remap_reply_server), (u'msg', _Remap_reply_msg), ]) Remap_reply._ext = None #-----< RMReply >-----# RMReply = CHOICE(name=u'RMReply', mode=MODE_TYPE) _RMReply_error = STR_VIS(name=u'error', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RMReply_remap = SEQ_OF(name=u'remap', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Remap', 'Remap-result'))) _RMReply_maps_to_builds = SEQ_OF(name=u'maps-to-builds', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RMReply_maps_to_builds__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _RMReply_maps_to_builds._cont = __RMReply_maps_to_builds__item_ _RMReply_maps_from_builds = SEQ_OF(name=u'maps-from-builds', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RMReply_maps_from_builds__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _RMReply_maps_from_builds._cont = __RMReply_maps_from_builds__item_ _RMReply_all_builds = SEQ_OF(name=u'all-builds', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RMReply_all_builds__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _RMReply_all_builds._cont = __RMReply_all_builds__item_ RMReply._cont = ASN1Dict([ (u'error', _RMReply_error), (u'remap', _RMReply_remap), (u'maps-to-builds', _RMReply_maps_to_builds), (u'maps-from-builds', _RMReply_maps_from_builds), (u'all-builds', _RMReply_all_builds), ]) RMReply._ext = None #-----< Remap-result >-----# Remap_result = SEQ_OF(name=u'Remap-result', mode=MODE_TYPE) _Remap_result__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) Remap_result._cont = _Remap_result__item_ _all_ = [ Remap_dt, Remap_db_id, _Remap_request_request, _Remap_request_version, _Remap_request_tool, Remap_request, _RMRequest_remap, _RMRequest_maps_to_builds, _RMRequest_maps_from_builds, _RMRequest_all_builds, RMRequest, _Remap_query_from_build, _Remap_query_to_build, __Remap_query_locs__item_, _Remap_query_locs, Remap_query, _Remap_reply_reply, _Remap_reply_dt, _Remap_reply_server, _Remap_reply_msg, Remap_reply, _RMReply_error, _RMReply_remap, __RMReply_maps_to_builds__item_, _RMReply_maps_to_builds, __RMReply_maps_from_builds__item_, _RMReply_maps_from_builds, __RMReply_all_builds__item_, _RMReply_all_builds, RMReply, _Remap_result__item_, Remap_result, ] class NCBI_ScoreMat: _name_ = u'NCBI-ScoreMat' _oid_ = [] _obj_ = [ u'BlockProperty', u'CoreBlock', u'LoopConstraint', u'CoreDef', u'Site-annot', u'Site-annot-set', u'PssmFinalData', u'PssmIntermediateData', u'Pssm', u'FormatRpsDbParameters', u'PssmParameters', u'PssmWithParameters', ] _type_ = [ u'BlockProperty', u'CoreBlock', u'LoopConstraint', u'CoreDef', u'Site-annot', u'Site-annot-set', u'PssmFinalData', u'PssmIntermediateData', u'Pssm', u'FormatRpsDbParameters', u'PssmParameters', u'PssmWithParameters', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< BlockProperty >-----# BlockProperty = SEQ(name=u'BlockProperty', mode=MODE_TYPE) _BlockProperty_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BlockProperty_type._cont = ASN1Dict([(u'unassigned', 0), (u'threshold', 1), (u'minscore', 2), (u'maxscore', 3), (u'meanscore', 4), (u'variance', 5), (u'name', 10), (u'is-optional', 20), (u'other', 255)]) _BlockProperty_intvalue = INT(name=u'intvalue', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BlockProperty_textvalue = STR_VIS(name=u'textvalue', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) BlockProperty._cont = ASN1Dict([ (u'type', _BlockProperty_type), (u'intvalue', _BlockProperty_intvalue), (u'textvalue', _BlockProperty_textvalue), ]) BlockProperty._ext = None #-----< CoreBlock >-----# CoreBlock = SEQ(name=u'CoreBlock', mode=MODE_TYPE) _CoreBlock_start = INT(name=u'start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _CoreBlock_stop = INT(name=u'stop', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _CoreBlock_minstart = INT(name=u'minstart', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _CoreBlock_maxstop = INT(name=u'maxstop', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _CoreBlock_property = SEQ_OF(name=u'property', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __CoreBlock_property__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ScoreMat', 'BlockProperty'))) _CoreBlock_property._cont = __CoreBlock_property__item_ CoreBlock._cont = ASN1Dict([ (u'start', _CoreBlock_start), (u'stop', _CoreBlock_stop), (u'minstart', _CoreBlock_minstart), (u'maxstop', _CoreBlock_maxstop), (u'property', _CoreBlock_property), ]) CoreBlock._ext = None #-----< LoopConstraint >-----# LoopConstraint = SEQ(name=u'LoopConstraint', mode=MODE_TYPE) _LoopConstraint_minlength = INT(name=u'minlength', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _LoopConstraint_maxlength = INT(name=u'maxlength', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=100000) LoopConstraint._cont = ASN1Dict([ (u'minlength', _LoopConstraint_minlength), (u'maxlength', _LoopConstraint_maxlength), ]) LoopConstraint._ext = None #-----< CoreDef >-----# CoreDef = SEQ(name=u'CoreDef', mode=MODE_TYPE) _CoreDef_nblocks = INT(name=u'nblocks', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _CoreDef_blocks = SEQ_OF(name=u'blocks', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __CoreDef_blocks__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ScoreMat', 'CoreBlock'))) _CoreDef_blocks._cont = __CoreDef_blocks__item_ _CoreDef_loops = SEQ_OF(name=u'loops', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __CoreDef_loops__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ScoreMat', 'LoopConstraint'))) _CoreDef_loops._cont = __CoreDef_loops__item_ _CoreDef_isDiscontinuous = BOOL(name=u'isDiscontinuous', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _CoreDef_insertions = SEQ_OF(name=u'insertions', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __CoreDef_insertions__item_ = INT(name='_item_', mode=MODE_TYPE) _CoreDef_insertions._cont = __CoreDef_insertions__item_ CoreDef._cont = ASN1Dict([ (u'nblocks', _CoreDef_nblocks), (u'blocks', _CoreDef_blocks), (u'loops', _CoreDef_loops), (u'isDiscontinuous', _CoreDef_isDiscontinuous), (u'insertions', _CoreDef_insertions), ]) CoreDef._ext = None #-----< Site-annot >-----# Site_annot = SEQ(name=u'Site-annot', mode=MODE_TYPE) _Site_annot_startPosition = INT(name=u'startPosition', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Site_annot_stopPosition = INT(name=u'stopPosition', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Site_annot_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Site_annot_type = INT(name=u'type', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Site_annot_aliases = SEQ_OF(name=u'aliases', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Site_annot_aliases__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Site_annot_aliases._cont = __Site_annot_aliases__item_ _Site_annot_motif = STR_VIS(name=u'motif', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Site_annot_motifuse = INT(name=u'motifuse', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Site_annot._cont = ASN1Dict([ (u'startPosition', _Site_annot_startPosition), (u'stopPosition', _Site_annot_stopPosition), (u'description', _Site_annot_description), (u'type', _Site_annot_type), (u'aliases', _Site_annot_aliases), (u'motif', _Site_annot_motif), (u'motifuse', _Site_annot_motifuse), ]) Site_annot._ext = None #-----< Site-annot-set >-----# Site_annot_set = SEQ_OF(name=u'Site-annot-set', mode=MODE_TYPE) _Site_annot_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-ScoreMat', 'Site-annot'))) Site_annot_set._cont = _Site_annot_set__item_ #-----< PssmFinalData >-----# PssmFinalData = SEQ(name=u'PssmFinalData', mode=MODE_TYPE) _PssmFinalData_scores = SEQ_OF(name=u'scores', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PssmFinalData_scores__item_ = INT(name='_item_', mode=MODE_TYPE) _PssmFinalData_scores._cont = __PssmFinalData_scores__item_ _PssmFinalData_lambda_ = REAL(name=u'lambda', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmFinalData_kappa = REAL(name=u'kappa', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmFinalData_h = REAL(name=u'h', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmFinalData_scalingFactor = INT(name=u'scalingFactor', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _PssmFinalData_lambdaUngapped = REAL(name=u'lambdaUngapped', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _PssmFinalData_kappaUngapped = REAL(name=u'kappaUngapped', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _PssmFinalData_hUngapped = REAL(name=u'hUngapped', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) PssmFinalData._cont = ASN1Dict([ (u'scores', _PssmFinalData_scores), (u'lambda', _PssmFinalData_lambda_), (u'kappa', _PssmFinalData_kappa), (u'h', _PssmFinalData_h), (u'scalingFactor', _PssmFinalData_scalingFactor), (u'lambdaUngapped', _PssmFinalData_lambdaUngapped), (u'kappaUngapped', _PssmFinalData_kappaUngapped), (u'hUngapped', _PssmFinalData_hUngapped), ]) PssmFinalData._ext = None #-----< PssmIntermediateData >-----# PssmIntermediateData = SEQ(name=u'PssmIntermediateData', mode=MODE_TYPE) _PssmIntermediateData_resFreqsPerPos = SEQ_OF(name=u'resFreqsPerPos', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_resFreqsPerPos__item_ = INT(name='_item_', mode=MODE_TYPE) _PssmIntermediateData_resFreqsPerPos._cont = __PssmIntermediateData_resFreqsPerPos__item_ _PssmIntermediateData_weightedResFreqsPerPos = SEQ_OF(name=u'weightedResFreqsPerPos', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_weightedResFreqsPerPos__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmIntermediateData_weightedResFreqsPerPos._cont = __PssmIntermediateData_weightedResFreqsPerPos__item_ _PssmIntermediateData_freqRatios = SEQ_OF(name=u'freqRatios', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PssmIntermediateData_freqRatios__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmIntermediateData_freqRatios._cont = __PssmIntermediateData_freqRatios__item_ _PssmIntermediateData_informationContent = SEQ_OF(name=u'informationContent', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_informationContent__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmIntermediateData_informationContent._cont = __PssmIntermediateData_informationContent__item_ _PssmIntermediateData_gaplessColumnWeights = SEQ_OF(name=u'gaplessColumnWeights', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_gaplessColumnWeights__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmIntermediateData_gaplessColumnWeights._cont = __PssmIntermediateData_gaplessColumnWeights__item_ _PssmIntermediateData_sigma = SEQ_OF(name=u'sigma', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_sigma__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmIntermediateData_sigma._cont = __PssmIntermediateData_sigma__item_ _PssmIntermediateData_intervalSizes = SEQ_OF(name=u'intervalSizes', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_intervalSizes__item_ = INT(name='_item_', mode=MODE_TYPE) _PssmIntermediateData_intervalSizes._cont = __PssmIntermediateData_intervalSizes__item_ _PssmIntermediateData_numMatchingSeqs = SEQ_OF(name=u'numMatchingSeqs', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_numMatchingSeqs__item_ = INT(name='_item_', mode=MODE_TYPE) _PssmIntermediateData_numMatchingSeqs._cont = __PssmIntermediateData_numMatchingSeqs__item_ _PssmIntermediateData_numIndeptObsr = SEQ_OF(name=u'numIndeptObsr', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PssmIntermediateData_numIndeptObsr__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _PssmIntermediateData_numIndeptObsr._cont = __PssmIntermediateData_numIndeptObsr__item_ PssmIntermediateData._cont = ASN1Dict([ (u'resFreqsPerPos', _PssmIntermediateData_resFreqsPerPos), (u'weightedResFreqsPerPos', _PssmIntermediateData_weightedResFreqsPerPos), (u'freqRatios', _PssmIntermediateData_freqRatios), (u'informationContent', _PssmIntermediateData_informationContent), (u'gaplessColumnWeights', _PssmIntermediateData_gaplessColumnWeights), (u'sigma', _PssmIntermediateData_sigma), (u'intervalSizes', _PssmIntermediateData_intervalSizes), (u'numMatchingSeqs', _PssmIntermediateData_numMatchingSeqs), (u'numIndeptObsr', _PssmIntermediateData_numIndeptObsr), ]) PssmIntermediateData._ext = None #-----< Pssm >-----# Pssm = SEQ(name=u'Pssm', mode=MODE_TYPE) _Pssm_isProtein = BOOL(name=u'isProtein', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=True) _Pssm_identifier = CHOICE(name=u'identifier', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id')), opt=True) _Pssm_numRows = INT(name=u'numRows', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Pssm_numColumns = INT(name=u'numColumns', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Pssm_rowLabels = SEQ_OF(name=u'rowLabels', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Pssm_rowLabels__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Pssm_rowLabels._cont = __Pssm_rowLabels__item_ _Pssm_byRow = BOOL(name=u'byRow', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Pssm_query = CHOICE(name=u'query', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry')), opt=True) _Pssm_intermediateData = SEQ(name=u'intermediateData', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmIntermediateData')), opt=True) _Pssm_finalData = SEQ(name=u'finalData', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmFinalData')), opt=True) Pssm._cont = ASN1Dict([ (u'isProtein', _Pssm_isProtein), (u'identifier', _Pssm_identifier), (u'numRows', _Pssm_numRows), (u'numColumns', _Pssm_numColumns), (u'rowLabels', _Pssm_rowLabels), (u'byRow', _Pssm_byRow), (u'query', _Pssm_query), (u'intermediateData', _Pssm_intermediateData), (u'finalData', _Pssm_finalData), ]) Pssm._ext = None #-----< FormatRpsDbParameters >-----# FormatRpsDbParameters = SEQ(name=u'FormatRpsDbParameters', mode=MODE_TYPE) _FormatRpsDbParameters_matrixName = STR_VIS(name=u'matrixName', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _FormatRpsDbParameters_gapOpen = INT(name=u'gapOpen', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _FormatRpsDbParameters_gapExtend = INT(name=u'gapExtend', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) FormatRpsDbParameters._cont = ASN1Dict([ (u'matrixName', _FormatRpsDbParameters_matrixName), (u'gapOpen', _FormatRpsDbParameters_gapOpen), (u'gapExtend', _FormatRpsDbParameters_gapExtend), ]) FormatRpsDbParameters._ext = None #-----< PssmParameters >-----# PssmParameters = SEQ(name=u'PssmParameters', mode=MODE_TYPE) _PssmParameters_pseudocount = INT(name=u'pseudocount', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PssmParameters_rpsdbparams = SEQ(name=u'rpsdbparams', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'FormatRpsDbParameters')), opt=True) _PssmParameters_constraints = SEQ(name=u'constraints', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'CoreDef')), opt=True) _PssmParameters_bitScoreThresh = REAL(name=u'bitScoreThresh', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _PssmParameters_annotatedSites = SEQ_OF(name=u'annotatedSites', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'Site-annot-set')), opt=True) PssmParameters._cont = ASN1Dict([ (u'pseudocount', _PssmParameters_pseudocount), (u'rpsdbparams', _PssmParameters_rpsdbparams), (u'constraints', _PssmParameters_constraints), (u'bitScoreThresh', _PssmParameters_bitScoreThresh), (u'annotatedSites', _PssmParameters_annotatedSites), ]) PssmParameters._ext = None #-----< PssmWithParameters >-----# PssmWithParameters = SEQ(name=u'PssmWithParameters', mode=MODE_TYPE) _PssmWithParameters_pssm = SEQ(name=u'pssm', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'Pssm'))) _PssmWithParameters_params = SEQ(name=u'params', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-ScoreMat', 'PssmParameters')), opt=True) PssmWithParameters._cont = ASN1Dict([ (u'pssm', _PssmWithParameters_pssm), (u'params', _PssmWithParameters_params), ]) PssmWithParameters._ext = None _all_ = [ _BlockProperty_type, _BlockProperty_intvalue, _BlockProperty_textvalue, BlockProperty, _CoreBlock_start, _CoreBlock_stop, _CoreBlock_minstart, _CoreBlock_maxstop, __CoreBlock_property__item_, _CoreBlock_property, CoreBlock, _LoopConstraint_minlength, _LoopConstraint_maxlength, LoopConstraint, _CoreDef_nblocks, __CoreDef_blocks__item_, _CoreDef_blocks, __CoreDef_loops__item_, _CoreDef_loops, _CoreDef_isDiscontinuous, __CoreDef_insertions__item_, _CoreDef_insertions, CoreDef, _Site_annot_startPosition, _Site_annot_stopPosition, _Site_annot_description, _Site_annot_type, __Site_annot_aliases__item_, _Site_annot_aliases, _Site_annot_motif, _Site_annot_motifuse, Site_annot, _Site_annot_set__item_, Site_annot_set, __PssmFinalData_scores__item_, _PssmFinalData_scores, _PssmFinalData_lambda_, _PssmFinalData_kappa, _PssmFinalData_h, _PssmFinalData_scalingFactor, _PssmFinalData_lambdaUngapped, _PssmFinalData_kappaUngapped, _PssmFinalData_hUngapped, PssmFinalData, __PssmIntermediateData_resFreqsPerPos__item_, _PssmIntermediateData_resFreqsPerPos, __PssmIntermediateData_weightedResFreqsPerPos__item_, _PssmIntermediateData_weightedResFreqsPerPos, __PssmIntermediateData_freqRatios__item_, _PssmIntermediateData_freqRatios, __PssmIntermediateData_informationContent__item_, _PssmIntermediateData_informationContent, __PssmIntermediateData_gaplessColumnWeights__item_, _PssmIntermediateData_gaplessColumnWeights, __PssmIntermediateData_sigma__item_, _PssmIntermediateData_sigma, __PssmIntermediateData_intervalSizes__item_, _PssmIntermediateData_intervalSizes, __PssmIntermediateData_numMatchingSeqs__item_, _PssmIntermediateData_numMatchingSeqs, __PssmIntermediateData_numIndeptObsr__item_, _PssmIntermediateData_numIndeptObsr, PssmIntermediateData, _Pssm_isProtein, _Pssm_identifier, _Pssm_numRows, _Pssm_numColumns, __Pssm_rowLabels__item_, _Pssm_rowLabels, _Pssm_byRow, _Pssm_query, _Pssm_intermediateData, _Pssm_finalData, Pssm, _FormatRpsDbParameters_matrixName, _FormatRpsDbParameters_gapOpen, _FormatRpsDbParameters_gapExtend, FormatRpsDbParameters, _PssmParameters_pseudocount, _PssmParameters_rpsdbparams, _PssmParameters_constraints, _PssmParameters_bitScoreThresh, _PssmParameters_annotatedSites, PssmParameters, _PssmWithParameters_pssm, _PssmWithParameters_params, PssmWithParameters, ] class NCBI_Seqalign: _name_ = u'NCBI-Seqalign' _oid_ = [] _obj_ = [ u'Seq-align-set', u'Seq-align', u'Dense-diag', u'Dense-seg', u'Packed-seg', u'Std-seg', u'Spliced-seg', u'Spliced-seg-modifier', u'Spliced-exon', u'Product-pos', u'Prot-pos', u'Spliced-exon-chunk', u'Splice-site', u'Sparse-seg', u'Sparse-align', u'Sparse-seg-ext', u'Score', u'Score-set', ] _type_ = [ u'Seq-align-set', u'Seq-align', u'Dense-diag', u'Dense-seg', u'Packed-seg', u'Std-seg', u'Spliced-seg', u'Spliced-seg-modifier', u'Spliced-exon', u'Product-pos', u'Prot-pos', u'Spliced-exon-chunk', u'Splice-site', u'Sparse-seg', u'Sparse-align', u'Sparse-seg-ext', u'Score', u'Score-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Seq-align-set >-----# Seq_align_set = SET_OF(name=u'Seq-align-set', mode=MODE_TYPE) _Seq_align_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) Seq_align_set._cont = _Seq_align_set__item_ #-----< Seq-align >-----# Seq_align = SEQ(name=u'Seq-align', mode=MODE_TYPE) _Seq_align_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_align_type._cont = ASN1Dict([(u'not-set', 0), (u'global', 1), (u'diags', 2), (u'partial', 3), (u'disc', 4), (u'other', 255)]) _Seq_align_type._ext = None _Seq_align_dim = INT(name=u'dim', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_align_score = SET_OF(name=u'score', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_align_score__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Seq_align_score._cont = __Seq_align_score__item_ _Seq_align_segs = CHOICE(name=u'segs', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Seq_align_segs_dendiag = SEQ_OF(name=u'dendiag', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_align_segs_dendiag__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Dense-diag'))) __Seq_align_segs_dendiag._cont = ___Seq_align_segs_dendiag__item_ __Seq_align_segs_denseg = SEQ(name=u'denseg', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Dense-seg'))) __Seq_align_segs_std = SEQ_OF(name=u'std', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_align_segs_std__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Std-seg'))) __Seq_align_segs_std._cont = ___Seq_align_segs_std__item_ __Seq_align_segs_packed = SEQ(name=u'packed', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Packed-seg'))) __Seq_align_segs_disc = SET_OF(name=u'disc', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align-set'))) __Seq_align_segs_spliced = SEQ(name=u'spliced', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Spliced-seg'))) __Seq_align_segs_sparse = SEQ(name=u'sparse', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Sparse-seg'))) _Seq_align_segs._cont = ASN1Dict([ (u'dendiag', __Seq_align_segs_dendiag), (u'denseg', __Seq_align_segs_denseg), (u'std', __Seq_align_segs_std), (u'packed', __Seq_align_segs_packed), (u'disc', __Seq_align_segs_disc), (u'spliced', __Seq_align_segs_spliced), (u'sparse', __Seq_align_segs_sparse), ]) _Seq_align_segs._ext = None _Seq_align_bounds = SET_OF(name=u'bounds', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_align_bounds__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Seq_align_bounds._cont = __Seq_align_bounds__item_ _Seq_align_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_align_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _Seq_align_id._cont = __Seq_align_id__item_ _Seq_align_ext = SEQ_OF(name=u'ext', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_align_ext__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'User-object'))) _Seq_align_ext._cont = __Seq_align_ext__item_ Seq_align._cont = ASN1Dict([ (u'type', _Seq_align_type), (u'dim', _Seq_align_dim), (u'score', _Seq_align_score), (u'segs', _Seq_align_segs), (u'bounds', _Seq_align_bounds), (u'id', _Seq_align_id), (u'ext', _Seq_align_ext), ]) Seq_align._ext = None #-----< Dense-diag >-----# Dense_diag = SEQ(name=u'Dense-diag', mode=MODE_TYPE) _Dense_diag_dim = INT(name=u'dim', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _Dense_diag_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Dense_diag_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Dense_diag_ids._cont = __Dense_diag_ids__item_ _Dense_diag_starts = SEQ_OF(name=u'starts', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Dense_diag_starts__item_ = INT(name='_item_', mode=MODE_TYPE) _Dense_diag_starts._cont = __Dense_diag_starts__item_ _Dense_diag_len = INT(name=u'len', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Dense_diag_strands = SEQ_OF(name=u'strands', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Dense_diag_strands__item_ = ENUM(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand'))) _Dense_diag_strands._cont = __Dense_diag_strands__item_ _Dense_diag_scores = SET_OF(name=u'scores', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Dense_diag_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Dense_diag_scores._cont = __Dense_diag_scores__item_ Dense_diag._cont = ASN1Dict([ (u'dim', _Dense_diag_dim), (u'ids', _Dense_diag_ids), (u'starts', _Dense_diag_starts), (u'len', _Dense_diag_len), (u'strands', _Dense_diag_strands), (u'scores', _Dense_diag_scores), ]) Dense_diag._ext = None #-----< Dense-seg >-----# Dense_seg = SEQ(name=u'Dense-seg', mode=MODE_TYPE) _Dense_seg_dim = INT(name=u'dim', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _Dense_seg_numseg = INT(name=u'numseg', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Dense_seg_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Dense_seg_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Dense_seg_ids._cont = __Dense_seg_ids__item_ _Dense_seg_starts = SEQ_OF(name=u'starts', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Dense_seg_starts__item_ = INT(name='_item_', mode=MODE_TYPE) _Dense_seg_starts._cont = __Dense_seg_starts__item_ _Dense_seg_lens = SEQ_OF(name=u'lens', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Dense_seg_lens__item_ = INT(name='_item_', mode=MODE_TYPE) _Dense_seg_lens._cont = __Dense_seg_lens__item_ _Dense_seg_strands = SEQ_OF(name=u'strands', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Dense_seg_strands__item_ = ENUM(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand'))) _Dense_seg_strands._cont = __Dense_seg_strands__item_ _Dense_seg_scores = SEQ_OF(name=u'scores', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Dense_seg_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Dense_seg_scores._cont = __Dense_seg_scores__item_ Dense_seg._cont = ASN1Dict([ (u'dim', _Dense_seg_dim), (u'numseg', _Dense_seg_numseg), (u'ids', _Dense_seg_ids), (u'starts', _Dense_seg_starts), (u'lens', _Dense_seg_lens), (u'strands', _Dense_seg_strands), (u'scores', _Dense_seg_scores), ]) Dense_seg._ext = None #-----< Packed-seg >-----# Packed_seg = SEQ(name=u'Packed-seg', mode=MODE_TYPE) _Packed_seg_dim = INT(name=u'dim', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _Packed_seg_numseg = INT(name=u'numseg', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Packed_seg_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Packed_seg_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Packed_seg_ids._cont = __Packed_seg_ids__item_ _Packed_seg_starts = SEQ_OF(name=u'starts', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Packed_seg_starts__item_ = INT(name='_item_', mode=MODE_TYPE) _Packed_seg_starts._cont = __Packed_seg_starts__item_ _Packed_seg_present = OCT_STR(name=u'present', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Packed_seg_lens = SEQ_OF(name=u'lens', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Packed_seg_lens__item_ = INT(name='_item_', mode=MODE_TYPE) _Packed_seg_lens._cont = __Packed_seg_lens__item_ _Packed_seg_strands = SEQ_OF(name=u'strands', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Packed_seg_strands__item_ = ENUM(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand'))) _Packed_seg_strands._cont = __Packed_seg_strands__item_ _Packed_seg_scores = SEQ_OF(name=u'scores', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Packed_seg_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Packed_seg_scores._cont = __Packed_seg_scores__item_ Packed_seg._cont = ASN1Dict([ (u'dim', _Packed_seg_dim), (u'numseg', _Packed_seg_numseg), (u'ids', _Packed_seg_ids), (u'starts', _Packed_seg_starts), (u'present', _Packed_seg_present), (u'lens', _Packed_seg_lens), (u'strands', _Packed_seg_strands), (u'scores', _Packed_seg_scores), ]) Packed_seg._ext = None #-----< Std-seg >-----# Std_seg = SEQ(name=u'Std-seg', mode=MODE_TYPE) _Std_seg_dim = INT(name=u'dim', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=2) _Std_seg_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Std_seg_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Std_seg_ids._cont = __Std_seg_ids__item_ _Std_seg_loc = SEQ_OF(name=u'loc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Std_seg_loc__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Std_seg_loc._cont = __Std_seg_loc__item_ _Std_seg_scores = SET_OF(name=u'scores', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Std_seg_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Std_seg_scores._cont = __Std_seg_scores__item_ Std_seg._cont = ASN1Dict([ (u'dim', _Std_seg_dim), (u'ids', _Std_seg_ids), (u'loc', _Std_seg_loc), (u'scores', _Std_seg_scores), ]) Std_seg._ext = None #-----< Spliced-seg >-----# Spliced_seg = SEQ(name=u'Spliced-seg', mode=MODE_TYPE) _Spliced_seg_product_id = CHOICE(name=u'product-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _Spliced_seg_genomic_id = CHOICE(name=u'genomic-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _Spliced_seg_product_strand = ENUM(name=u'product-strand', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Spliced_seg_genomic_strand = ENUM(name=u'genomic-strand', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Spliced_seg_product_type = ENUM(name=u'product-type', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_seg_product_type._cont = ASN1Dict([(u'transcript', 0), (u'protein', 1)]) _Spliced_seg_product_type._ext = None _Spliced_seg_exons = SEQ_OF(name=u'exons', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Spliced_seg_exons__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Spliced-exon'))) _Spliced_seg_exons._cont = __Spliced_seg_exons__item_ _Spliced_seg_poly_a = INT(name=u'poly-a', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Spliced_seg_product_length = INT(name=u'product-length', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Spliced_seg_modifiers = SET_OF(name=u'modifiers', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Spliced_seg_modifiers__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Spliced-seg-modifier'))) _Spliced_seg_modifiers._cont = __Spliced_seg_modifiers__item_ Spliced_seg._cont = ASN1Dict([ (u'product-id', _Spliced_seg_product_id), (u'genomic-id', _Spliced_seg_genomic_id), (u'product-strand', _Spliced_seg_product_strand), (u'genomic-strand', _Spliced_seg_genomic_strand), (u'product-type', _Spliced_seg_product_type), (u'exons', _Spliced_seg_exons), (u'poly-a', _Spliced_seg_poly_a), (u'product-length', _Spliced_seg_product_length), (u'modifiers', _Spliced_seg_modifiers), ]) Spliced_seg._ext = None #-----< Spliced-seg-modifier >-----# Spliced_seg_modifier = CHOICE(name=u'Spliced-seg-modifier', mode=MODE_TYPE) _Spliced_seg_modifier_start_codon_found = BOOL(name=u'start-codon-found', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_seg_modifier_stop_codon_found = BOOL(name=u'stop-codon-found', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Spliced_seg_modifier._cont = ASN1Dict([ (u'start-codon-found', _Spliced_seg_modifier_start_codon_found), (u'stop-codon-found', _Spliced_seg_modifier_stop_codon_found), ]) Spliced_seg_modifier._ext = None #-----< Spliced-exon >-----# Spliced_exon = SEQ(name=u'Spliced-exon', mode=MODE_TYPE) _Spliced_exon_product_start = CHOICE(name=u'product-start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Product-pos'))) _Spliced_exon_product_end = CHOICE(name=u'product-end', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Product-pos'))) _Spliced_exon_genomic_start = INT(name=u'genomic-start', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_exon_genomic_end = INT(name=u'genomic-end', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_exon_product_id = CHOICE(name=u'product-id', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _Spliced_exon_genomic_id = CHOICE(name=u'genomic-id', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _Spliced_exon_product_strand = ENUM(name=u'product-strand', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Spliced_exon_genomic_strand = ENUM(name=u'genomic-strand', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Spliced_exon_parts = SEQ_OF(name=u'parts', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Spliced_exon_parts__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Spliced-exon-chunk'))) _Spliced_exon_parts._cont = __Spliced_exon_parts__item_ _Spliced_exon_scores = SET_OF(name=u'scores', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Score-set')), opt=True) _Spliced_exon_acceptor_before_exon = SEQ(name=u'acceptor-before-exon', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Splice-site')), opt=True) _Spliced_exon_donor_after_exon = SEQ(name=u'donor-after-exon', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Splice-site')), opt=True) _Spliced_exon_partial = BOOL(name=u'partial', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Spliced_exon_ext = SEQ_OF(name=u'ext', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Spliced_exon_ext__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'User-object'))) _Spliced_exon_ext._cont = __Spliced_exon_ext__item_ Spliced_exon._cont = ASN1Dict([ (u'product-start', _Spliced_exon_product_start), (u'product-end', _Spliced_exon_product_end), (u'genomic-start', _Spliced_exon_genomic_start), (u'genomic-end', _Spliced_exon_genomic_end), (u'product-id', _Spliced_exon_product_id), (u'genomic-id', _Spliced_exon_genomic_id), (u'product-strand', _Spliced_exon_product_strand), (u'genomic-strand', _Spliced_exon_genomic_strand), (u'parts', _Spliced_exon_parts), (u'scores', _Spliced_exon_scores), (u'acceptor-before-exon', _Spliced_exon_acceptor_before_exon), (u'donor-after-exon', _Spliced_exon_donor_after_exon), (u'partial', _Spliced_exon_partial), (u'ext', _Spliced_exon_ext), ]) Spliced_exon._ext = None #-----< Product-pos >-----# Product_pos = CHOICE(name=u'Product-pos', mode=MODE_TYPE) _Product_pos_nucpos = INT(name=u'nucpos', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Product_pos_protpos = SEQ(name=u'protpos', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Prot-pos'))) Product_pos._cont = ASN1Dict([ (u'nucpos', _Product_pos_nucpos), (u'protpos', _Product_pos_protpos), ]) Product_pos._ext = None #-----< Prot-pos >-----# Prot_pos = SEQ(name=u'Prot-pos', mode=MODE_TYPE) _Prot_pos_amin = INT(name=u'amin', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Prot_pos_frame = INT(name=u'frame', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) Prot_pos._cont = ASN1Dict([ (u'amin', _Prot_pos_amin), (u'frame', _Prot_pos_frame), ]) Prot_pos._ext = None #-----< Spliced-exon-chunk >-----# Spliced_exon_chunk = CHOICE(name=u'Spliced-exon-chunk', mode=MODE_TYPE) _Spliced_exon_chunk_match = INT(name=u'match', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_exon_chunk_mismatch = INT(name=u'mismatch', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_exon_chunk_diag = INT(name=u'diag', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_exon_chunk_product_ins = INT(name=u'product-ins', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Spliced_exon_chunk_genomic_ins = INT(name=u'genomic-ins', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Spliced_exon_chunk._cont = ASN1Dict([ (u'match', _Spliced_exon_chunk_match), (u'mismatch', _Spliced_exon_chunk_mismatch), (u'diag', _Spliced_exon_chunk_diag), (u'product-ins', _Spliced_exon_chunk_product_ins), (u'genomic-ins', _Spliced_exon_chunk_genomic_ins), ]) Spliced_exon_chunk._ext = None #-----< Splice-site >-----# Splice_site = SEQ(name=u'Splice-site', mode=MODE_TYPE) _Splice_site_bases = STR_VIS(name=u'bases', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Splice_site._cont = ASN1Dict([ (u'bases', _Splice_site_bases), ]) Splice_site._ext = None #-----< Sparse-seg >-----# Sparse_seg = SEQ(name=u'Sparse-seg', mode=MODE_TYPE) _Sparse_seg_master_id = CHOICE(name=u'master-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _Sparse_seg_rows = SET_OF(name=u'rows', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Sparse_seg_rows__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Sparse-align'))) _Sparse_seg_rows._cont = __Sparse_seg_rows__item_ _Sparse_seg_row_scores = SET_OF(name=u'row-scores', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Sparse_seg_row_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Sparse_seg_row_scores._cont = __Sparse_seg_row_scores__item_ _Sparse_seg_ext = SET_OF(name=u'ext', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Sparse_seg_ext__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Sparse-seg-ext'))) _Sparse_seg_ext._cont = __Sparse_seg_ext__item_ Sparse_seg._cont = ASN1Dict([ (u'master-id', _Sparse_seg_master_id), (u'rows', _Sparse_seg_rows), (u'row-scores', _Sparse_seg_row_scores), (u'ext', _Sparse_seg_ext), ]) Sparse_seg._ext = None #-----< Sparse-align >-----# Sparse_align = SEQ(name=u'Sparse-align', mode=MODE_TYPE) _Sparse_align_first_id = CHOICE(name=u'first-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Sparse_align_second_id = CHOICE(name=u'second-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Sparse_align_numseg = INT(name=u'numseg', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Sparse_align_first_starts = SEQ_OF(name=u'first-starts', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Sparse_align_first_starts__item_ = INT(name='_item_', mode=MODE_TYPE) _Sparse_align_first_starts._cont = __Sparse_align_first_starts__item_ _Sparse_align_second_starts = SEQ_OF(name=u'second-starts', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Sparse_align_second_starts__item_ = INT(name='_item_', mode=MODE_TYPE) _Sparse_align_second_starts._cont = __Sparse_align_second_starts__item_ _Sparse_align_lens = SEQ_OF(name=u'lens', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Sparse_align_lens__item_ = INT(name='_item_', mode=MODE_TYPE) _Sparse_align_lens._cont = __Sparse_align_lens__item_ _Sparse_align_second_strands = SEQ_OF(name=u'second-strands', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Sparse_align_second_strands__item_ = ENUM(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand'))) _Sparse_align_second_strands._cont = __Sparse_align_second_strands__item_ _Sparse_align_seg_scores = SET_OF(name=u'seg-scores', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Sparse_align_seg_scores__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) _Sparse_align_seg_scores._cont = __Sparse_align_seg_scores__item_ Sparse_align._cont = ASN1Dict([ (u'first-id', _Sparse_align_first_id), (u'second-id', _Sparse_align_second_id), (u'numseg', _Sparse_align_numseg), (u'first-starts', _Sparse_align_first_starts), (u'second-starts', _Sparse_align_second_starts), (u'lens', _Sparse_align_lens), (u'second-strands', _Sparse_align_second_strands), (u'seg-scores', _Sparse_align_seg_scores), ]) Sparse_align._ext = None #-----< Sparse-seg-ext >-----# Sparse_seg_ext = SEQ(name=u'Sparse-seg-ext', mode=MODE_TYPE) _Sparse_seg_ext_index = INT(name=u'index', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Sparse_seg_ext._cont = ASN1Dict([ (u'index', _Sparse_seg_ext_index), ]) Sparse_seg_ext._ext = None #-----< Score >-----# Score = SEQ(name=u'Score', mode=MODE_TYPE) _Score_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id')), opt=True) _Score_value = CHOICE(name=u'value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Score_value_real = REAL(name=u'real', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) __Score_value_int = INT(name=u'int', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Score_value._cont = ASN1Dict([ (u'real', __Score_value_real), (u'int', __Score_value_int), ]) _Score_value._ext = None Score._cont = ASN1Dict([ (u'id', _Score_id), (u'value', _Score_value), ]) Score._ext = None #-----< Score-set >-----# Score_set = SET_OF(name=u'Score-set', mode=MODE_TYPE) _Score_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Score'))) Score_set._cont = _Score_set__item_ _all_ = [ _Seq_align_set__item_, Seq_align_set, _Seq_align_type, _Seq_align_dim, __Seq_align_score__item_, _Seq_align_score, ___Seq_align_segs_dendiag__item_, __Seq_align_segs_dendiag, __Seq_align_segs_denseg, ___Seq_align_segs_std__item_, __Seq_align_segs_std, __Seq_align_segs_packed, __Seq_align_segs_disc, __Seq_align_segs_spliced, __Seq_align_segs_sparse, _Seq_align_segs, __Seq_align_bounds__item_, _Seq_align_bounds, __Seq_align_id__item_, _Seq_align_id, __Seq_align_ext__item_, _Seq_align_ext, Seq_align, _Dense_diag_dim, __Dense_diag_ids__item_, _Dense_diag_ids, __Dense_diag_starts__item_, _Dense_diag_starts, _Dense_diag_len, __Dense_diag_strands__item_, _Dense_diag_strands, __Dense_diag_scores__item_, _Dense_diag_scores, Dense_diag, _Dense_seg_dim, _Dense_seg_numseg, __Dense_seg_ids__item_, _Dense_seg_ids, __Dense_seg_starts__item_, _Dense_seg_starts, __Dense_seg_lens__item_, _Dense_seg_lens, __Dense_seg_strands__item_, _Dense_seg_strands, __Dense_seg_scores__item_, _Dense_seg_scores, Dense_seg, _Packed_seg_dim, _Packed_seg_numseg, __Packed_seg_ids__item_, _Packed_seg_ids, __Packed_seg_starts__item_, _Packed_seg_starts, _Packed_seg_present, __Packed_seg_lens__item_, _Packed_seg_lens, __Packed_seg_strands__item_, _Packed_seg_strands, __Packed_seg_scores__item_, _Packed_seg_scores, Packed_seg, _Std_seg_dim, __Std_seg_ids__item_, _Std_seg_ids, __Std_seg_loc__item_, _Std_seg_loc, __Std_seg_scores__item_, _Std_seg_scores, Std_seg, _Spliced_seg_product_id, _Spliced_seg_genomic_id, _Spliced_seg_product_strand, _Spliced_seg_genomic_strand, _Spliced_seg_product_type, __Spliced_seg_exons__item_, _Spliced_seg_exons, _Spliced_seg_poly_a, _Spliced_seg_product_length, __Spliced_seg_modifiers__item_, _Spliced_seg_modifiers, Spliced_seg, _Spliced_seg_modifier_start_codon_found, _Spliced_seg_modifier_stop_codon_found, Spliced_seg_modifier, _Spliced_exon_product_start, _Spliced_exon_product_end, _Spliced_exon_genomic_start, _Spliced_exon_genomic_end, _Spliced_exon_product_id, _Spliced_exon_genomic_id, _Spliced_exon_product_strand, _Spliced_exon_genomic_strand, __Spliced_exon_parts__item_, _Spliced_exon_parts, _Spliced_exon_scores, _Spliced_exon_acceptor_before_exon, _Spliced_exon_donor_after_exon, _Spliced_exon_partial, __Spliced_exon_ext__item_, _Spliced_exon_ext, Spliced_exon, _Product_pos_nucpos, _Product_pos_protpos, Product_pos, _Prot_pos_amin, _Prot_pos_frame, Prot_pos, _Spliced_exon_chunk_match, _Spliced_exon_chunk_mismatch, _Spliced_exon_chunk_diag, _Spliced_exon_chunk_product_ins, _Spliced_exon_chunk_genomic_ins, Spliced_exon_chunk, _Splice_site_bases, Splice_site, _Sparse_seg_master_id, __Sparse_seg_rows__item_, _Sparse_seg_rows, __Sparse_seg_row_scores__item_, _Sparse_seg_row_scores, __Sparse_seg_ext__item_, _Sparse_seg_ext, Sparse_seg, _Sparse_align_first_id, _Sparse_align_second_id, _Sparse_align_numseg, __Sparse_align_first_starts__item_, _Sparse_align_first_starts, __Sparse_align_second_starts__item_, _Sparse_align_second_starts, __Sparse_align_lens__item_, _Sparse_align_lens, __Sparse_align_second_strands__item_, _Sparse_align_second_strands, __Sparse_align_seg_scores__item_, _Sparse_align_seg_scores, Sparse_align, _Sparse_seg_ext_index, Sparse_seg_ext, _Score_id, __Score_value_real, __Score_value_int, _Score_value, Score, _Score_set__item_, Score_set, ] class NCBI_Sequence: _name_ = u'NCBI-Sequence' _oid_ = [] _obj_ = [ u'StringStore', u'Bioseq', u'Seq-descr', u'Seqdesc', u'MolInfo', u'GIBB-mol', u'GIBB-mod', u'GIBB-method', u'Numbering', u'Num-cont', u'Num-enum', u'Num-ref', u'Num-real', u'Pubdesc', u'Heterogen', u'Seq-inst', u'Seq-ext', u'Seg-ext', u'Ref-ext', u'Map-ext', u'Delta-ext', u'Delta-seq', u'Seq-literal', u'Seq-hist', u'Seq-hist-rec', u'Seq-data', u'Seq-gap', u'Linkage-evidence', u'IUPACna', u'IUPACaa', u'NCBI2na', u'NCBI4na', u'NCBI8na', u'NCBIpna', u'NCBI8aa', u'NCBIeaa', u'NCBIpaa', u'NCBIstdaa', u'Textannot-id', u'Annot-id', u'Annot-descr', u'Annotdesc', u'Align-def', u'Seq-annot', ] _type_ = [ u'StringStore', u'Bioseq', u'Seq-descr', u'Seqdesc', u'MolInfo', u'GIBB-mol', u'GIBB-mod', u'GIBB-method', u'Numbering', u'Num-cont', u'Num-enum', u'Num-ref', u'Num-real', u'Pubdesc', u'Heterogen', u'Seq-inst', u'Seq-ext', u'Seg-ext', u'Ref-ext', u'Map-ext', u'Delta-ext', u'Delta-seq', u'Seq-literal', u'Seq-hist', u'Seq-hist-rec', u'Seq-data', u'Seq-gap', u'Linkage-evidence', u'IUPACna', u'IUPACaa', u'NCBI2na', u'NCBI4na', u'NCBI8na', u'NCBIpna', u'NCBI8aa', u'NCBIeaa', u'NCBIpaa', u'NCBIstdaa', u'Textannot-id', u'Annot-id', u'Annot-descr', u'Annotdesc', u'Align-def', u'Seq-annot', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< StringStore >-----# StringStore = OCT_STR(name=u'StringStore', mode=MODE_TYPE, tag=(1, TAG_APPLICATION, TAG_IMPLICIT)) #-----< Bioseq >-----# Bioseq = SEQ(name=u'Bioseq', mode=MODE_TYPE) _Bioseq_id = SET_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Bioseq_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Bioseq_id._cont = __Bioseq_id__item_ _Bioseq_descr = SET_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-descr')), opt=True) _Bioseq_inst = SEQ(name=u'inst', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-inst'))) _Bioseq_annot = SET_OF(name=u'annot', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Bioseq_annot__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Bioseq_annot._cont = __Bioseq_annot__item_ Bioseq._cont = ASN1Dict([ (u'id', _Bioseq_id), (u'descr', _Bioseq_descr), (u'inst', _Bioseq_inst), (u'annot', _Bioseq_annot), ]) Bioseq._ext = None #-----< Seq-descr >-----# Seq_descr = SET_OF(name=u'Seq-descr', mode=MODE_TYPE) _Seq_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seqdesc'))) Seq_descr._cont = _Seq_descr__item_ #-----< Seqdesc >-----# Seqdesc = CHOICE(name=u'Seqdesc', mode=MODE_TYPE) _Seqdesc_mol_type = ENUM(name=u'mol-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'GIBB-mol'))) _Seqdesc_modif = SET_OF(name=u'modif', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seqdesc_modif__item_ = ENUM(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'GIBB-mod'))) _Seqdesc_modif._cont = __Seqdesc_modif__item_ _Seqdesc_method = ENUM(name=u'method', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'GIBB-method'))) _Seqdesc_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seqdesc_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seqdesc_org = SEQ(name=u'org', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'Org-ref'))) _Seqdesc_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seqdesc_num = CHOICE(name=u'num', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Numbering'))) _Seqdesc_maploc = SEQ(name=u'maploc', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Seqdesc_pir = SEQ(name=u'pir', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('PIR-General', 'PIR-block'))) _Seqdesc_genbank = SEQ(name=u'genbank', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('GenBank-General', 'GB-block'))) _Seqdesc_pub = SEQ(name=u'pub', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Pubdesc'))) _Seqdesc_region = STR_VIS(name=u'region', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seqdesc_user = SEQ(name=u'user', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object'))) _Seqdesc_sp = SEQ(name=u'sp', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('SP-General', 'SP-block'))) _Seqdesc_dbxref = SEQ(name=u'dbxref', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Seqdesc_embl = SEQ(name=u'embl', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('EMBL-General', 'EMBL-block'))) _Seqdesc_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Seqdesc_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Seqdesc_prf = SEQ(name=u'prf', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('PRF-General', 'PRF-block'))) _Seqdesc_pdb = SEQ(name=u'pdb', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('PDB-General', 'PDB-block'))) _Seqdesc_het = STR_VIS(name=u'het', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Heterogen'))) _Seqdesc_source = SEQ(name=u'source', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'BioSource'))) _Seqdesc_molinfo = SEQ(name=u'molinfo', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'MolInfo'))) _Seqdesc_modelev = SEQ(name=u'modelev', mode=MODE_TYPE, tag=(24, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'ModelEvidenceSupport'))) Seqdesc._cont = ASN1Dict([ (u'mol-type', _Seqdesc_mol_type), (u'modif', _Seqdesc_modif), (u'method', _Seqdesc_method), (u'name', _Seqdesc_name), (u'title', _Seqdesc_title), (u'org', _Seqdesc_org), (u'comment', _Seqdesc_comment), (u'num', _Seqdesc_num), (u'maploc', _Seqdesc_maploc), (u'pir', _Seqdesc_pir), (u'genbank', _Seqdesc_genbank), (u'pub', _Seqdesc_pub), (u'region', _Seqdesc_region), (u'user', _Seqdesc_user), (u'sp', _Seqdesc_sp), (u'dbxref', _Seqdesc_dbxref), (u'embl', _Seqdesc_embl), (u'create-date', _Seqdesc_create_date), (u'update-date', _Seqdesc_update_date), (u'prf', _Seqdesc_prf), (u'pdb', _Seqdesc_pdb), (u'het', _Seqdesc_het), (u'source', _Seqdesc_source), (u'molinfo', _Seqdesc_molinfo), (u'modelev', _Seqdesc_modelev), ]) Seqdesc._ext = None #-----< MolInfo >-----# MolInfo = SEQ(name=u'MolInfo', mode=MODE_TYPE) _MolInfo_biomol = INT(name=u'biomol', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MolInfo_biomol._cont = ASN1Dict([(u'unknown', 0), (u'genomic', 1), (u'pre-RNA', 2), (u'mRNA', 3), (u'rRNA', 4), (u'tRNA', 5), (u'snRNA', 6), (u'scRNA', 7), (u'peptide', 8), (u'other-genetic', 9), (u'genomic-mRNA', 10), (u'cRNA', 11), (u'snoRNA', 12), (u'transcribed-RNA', 13), (u'ncRNA', 14), (u'tmRNA', 15), (u'other', 255)]) _MolInfo_tech = INT(name=u'tech', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MolInfo_tech._cont = ASN1Dict([(u'unknown', 0), (u'standard', 1), (u'est', 2), (u'sts', 3), (u'survey', 4), (u'genemap', 5), (u'physmap', 6), (u'derived', 7), (u'concept-trans', 8), (u'seq-pept', 9), (u'both', 10), (u'seq-pept-overlap', 11), (u'seq-pept-homol', 12), (u'concept-trans-a', 13), (u'htgs-1', 14), (u'htgs-2', 15), (u'htgs-3', 16), (u'fli-cdna', 17), (u'htgs-0', 18), (u'htc', 19), (u'wgs', 20), (u'barcode', 21), (u'composite-wgs-htgs', 22), (u'tsa', 23), (u'targeted', 24), (u'other', 255)]) _MolInfo_techexp = STR_VIS(name=u'techexp', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _MolInfo_completeness = INT(name=u'completeness', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _MolInfo_completeness._cont = ASN1Dict([(u'unknown', 0), (u'complete', 1), (u'partial', 2), (u'no-left', 3), (u'no-right', 4), (u'no-ends', 5), (u'has-left', 6), (u'has-right', 7), (u'other', 255)]) _MolInfo_gbmoltype = STR_VIS(name=u'gbmoltype', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) MolInfo._cont = ASN1Dict([ (u'biomol', _MolInfo_biomol), (u'tech', _MolInfo_tech), (u'techexp', _MolInfo_techexp), (u'completeness', _MolInfo_completeness), (u'gbmoltype', _MolInfo_gbmoltype), ]) MolInfo._ext = None #-----< GIBB-mol >-----# GIBB_mol = ENUM(name=u'GIBB-mol', mode=MODE_TYPE) GIBB_mol._cont = ASN1Dict([(u'unknown', 0), (u'genomic', 1), (u'pre-mRNA', 2), (u'mRNA', 3), (u'rRNA', 4), (u'tRNA', 5), (u'snRNA', 6), (u'scRNA', 7), (u'peptide', 8), (u'other-genetic', 9), (u'genomic-mRNA', 10), (u'other', 255)]) GIBB_mol._ext = None #-----< GIBB-mod >-----# GIBB_mod = ENUM(name=u'GIBB-mod', mode=MODE_TYPE) GIBB_mod._cont = ASN1Dict([(u'dna', 0), (u'rna', 1), (u'extrachrom', 2), (u'plasmid', 3), (u'mitochondrial', 4), (u'chloroplast', 5), (u'kinetoplast', 6), (u'cyanelle', 7), (u'synthetic', 8), (u'recombinant', 9), (u'partial', 10), (u'complete', 11), (u'mutagen', 12), (u'natmut', 13), (u'transposon', 14), (u'insertion-seq', 15), (u'no-left', 16), (u'no-right', 17), (u'macronuclear', 18), (u'proviral', 19), (u'est', 20), (u'sts', 21), (u'survey', 22), (u'chromoplast', 23), (u'genemap', 24), (u'restmap', 25), (u'physmap', 26), (u'other', 255)]) GIBB_mod._ext = None #-----< GIBB-method >-----# GIBB_method = ENUM(name=u'GIBB-method', mode=MODE_TYPE) GIBB_method._cont = ASN1Dict([(u'concept-trans', 1), (u'seq-pept', 2), (u'both', 3), (u'seq-pept-overlap', 4), (u'seq-pept-homol', 5), (u'concept-trans-a', 6), (u'other', 255)]) GIBB_method._ext = None #-----< Numbering >-----# Numbering = CHOICE(name=u'Numbering', mode=MODE_TYPE) _Numbering_cont = SEQ(name=u'cont', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Num-cont'))) _Numbering_enum = SEQ(name=u'enum', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Num-enum'))) _Numbering_ref = SEQ(name=u'ref', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Num-ref'))) _Numbering_real = SEQ(name=u'real', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Num-real'))) Numbering._cont = ASN1Dict([ (u'cont', _Numbering_cont), (u'enum', _Numbering_enum), (u'ref', _Numbering_ref), (u'real', _Numbering_real), ]) Numbering._ext = None #-----< Num-cont >-----# Num_cont = SEQ(name=u'Num-cont', mode=MODE_TYPE) _Num_cont_refnum = INT(name=u'refnum', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) _Num_cont_has_zero = BOOL(name=u'has-zero', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Num_cont_ascending = BOOL(name=u'ascending', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=True) Num_cont._cont = ASN1Dict([ (u'refnum', _Num_cont_refnum), (u'has-zero', _Num_cont_has_zero), (u'ascending', _Num_cont_ascending), ]) Num_cont._ext = None #-----< Num-enum >-----# Num_enum = SEQ(name=u'Num-enum', mode=MODE_TYPE) _Num_enum_num = INT(name=u'num', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Num_enum_names = SEQ_OF(name=u'names', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Num_enum_names__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Num_enum_names._cont = __Num_enum_names__item_ Num_enum._cont = ASN1Dict([ (u'num', _Num_enum_num), (u'names', _Num_enum_names), ]) Num_enum._ext = None #-----< Num-ref >-----# Num_ref = SEQ(name=u'Num-ref', mode=MODE_TYPE) _Num_ref_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Num_ref_type._cont = ASN1Dict([(u'not-set', 0), (u'sources', 1), (u'aligns', 2)]) _Num_ref_type._ext = None _Num_ref_aligns = SEQ(name=u'aligns', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align')), opt=True) Num_ref._cont = ASN1Dict([ (u'type', _Num_ref_type), (u'aligns', _Num_ref_aligns), ]) Num_ref._ext = None #-----< Num-real >-----# Num_real = SEQ(name=u'Num-real', mode=MODE_TYPE) _Num_real_a = REAL(name=u'a', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Num_real_b = REAL(name=u'b', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Num_real_units = STR_VIS(name=u'units', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Num_real._cont = ASN1Dict([ (u'a', _Num_real_a), (u'b', _Num_real_b), (u'units', _Num_real_units), ]) Num_real._ext = None #-----< Pubdesc >-----# Pubdesc = SEQ(name=u'Pubdesc', mode=MODE_TYPE) _Pubdesc_pub = SET_OF(name=u'pub', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub-equiv'))) _Pubdesc_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_fig = STR_VIS(name=u'fig', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_num = CHOICE(name=u'num', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Numbering')), opt=True) _Pubdesc_numexc = BOOL(name=u'numexc', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_poly_a = BOOL(name=u'poly-a', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_maploc = STR_VIS(name=u'maploc', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_seq_raw = OCT_STR(name=u'seq-raw', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'StringStore')), opt=True) _Pubdesc_align_group = INT(name=u'align-group', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Pubdesc_reftype = INT(name=u'reftype', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _Pubdesc_reftype._cont = ASN1Dict([(u'seq', 0), (u'sites', 1), (u'feats', 2), (u'no-target', 3)]) Pubdesc._cont = ASN1Dict([ (u'pub', _Pubdesc_pub), (u'name', _Pubdesc_name), (u'fig', _Pubdesc_fig), (u'num', _Pubdesc_num), (u'numexc', _Pubdesc_numexc), (u'poly-a', _Pubdesc_poly_a), (u'maploc', _Pubdesc_maploc), (u'seq-raw', _Pubdesc_seq_raw), (u'align-group', _Pubdesc_align_group), (u'comment', _Pubdesc_comment), (u'reftype', _Pubdesc_reftype), ]) Pubdesc._ext = None #-----< Heterogen >-----# Heterogen = STR_VIS(name=u'Heterogen', mode=MODE_TYPE) #-----< Seq-inst >-----# Seq_inst = SEQ(name=u'Seq-inst', mode=MODE_TYPE) _Seq_inst_repr = ENUM(name=u'repr', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_inst_repr._cont = ASN1Dict([(u'not-set', 0), (u'virtual', 1), (u'raw', 2), (u'seg', 3), (u'const', 4), (u'ref', 5), (u'consen', 6), (u'map', 7), (u'delta', 8), (u'other', 255)]) _Seq_inst_repr._ext = None _Seq_inst_mol = ENUM(name=u'mol', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_inst_mol._cont = ASN1Dict([(u'not-set', 0), (u'dna', 1), (u'rna', 2), (u'aa', 3), (u'na', 4), (u'other', 255)]) _Seq_inst_mol._ext = None _Seq_inst_length = INT(name=u'length', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_inst_fuzz = CHOICE(name=u'fuzz', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) _Seq_inst_topology = ENUM(name=u'topology', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'linear') _Seq_inst_topology._cont = ASN1Dict([(u'not-set', 0), (u'linear', 1), (u'circular', 2), (u'tandem', 3), (u'other', 255)]) _Seq_inst_topology._ext = None _Seq_inst_strand = ENUM(name=u'strand', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_inst_strand._cont = ASN1Dict([(u'not-set', 0), (u'ss', 1), (u'ds', 2), (u'mixed', 3), (u'other', 255)]) _Seq_inst_strand._ext = None _Seq_inst_seq_data = CHOICE(name=u'seq-data', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-data')), opt=True) _Seq_inst_ext = CHOICE(name=u'ext', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-ext')), opt=True) _Seq_inst_hist = SEQ(name=u'hist', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-hist')), opt=True) Seq_inst._cont = ASN1Dict([ (u'repr', _Seq_inst_repr), (u'mol', _Seq_inst_mol), (u'length', _Seq_inst_length), (u'fuzz', _Seq_inst_fuzz), (u'topology', _Seq_inst_topology), (u'strand', _Seq_inst_strand), (u'seq-data', _Seq_inst_seq_data), (u'ext', _Seq_inst_ext), (u'hist', _Seq_inst_hist), ]) Seq_inst._ext = None #-----< Seq-ext >-----# Seq_ext = CHOICE(name=u'Seq-ext', mode=MODE_TYPE) _Seq_ext_seg = SEQ_OF(name=u'seg', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seg-ext'))) _Seq_ext_ref = CHOICE(name=u'ref', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Ref-ext'))) _Seq_ext_map = SEQ_OF(name=u'map', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Map-ext'))) _Seq_ext_delta = SEQ_OF(name=u'delta', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Delta-ext'))) Seq_ext._cont = ASN1Dict([ (u'seg', _Seq_ext_seg), (u'ref', _Seq_ext_ref), (u'map', _Seq_ext_map), (u'delta', _Seq_ext_delta), ]) Seq_ext._ext = None #-----< Seg-ext >-----# Seg_ext = SEQ_OF(name=u'Seg-ext', mode=MODE_TYPE) _Seg_ext__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) Seg_ext._cont = _Seg_ext__item_ #-----< Ref-ext >-----# Ref_ext = CHOICE(name=u'Ref-ext', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) #-----< Map-ext >-----# Map_ext = SEQ_OF(name=u'Map-ext', mode=MODE_TYPE) _Map_ext__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Seq-feat'))) Map_ext._cont = _Map_ext__item_ #-----< Delta-ext >-----# Delta_ext = SEQ_OF(name=u'Delta-ext', mode=MODE_TYPE) _Delta_ext__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Delta-seq'))) Delta_ext._cont = _Delta_ext__item_ #-----< Delta-seq >-----# Delta_seq = CHOICE(name=u'Delta-seq', mode=MODE_TYPE) _Delta_seq_loc = CHOICE(name=u'loc', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Delta_seq_literal = SEQ(name=u'literal', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-literal'))) Delta_seq._cont = ASN1Dict([ (u'loc', _Delta_seq_loc), (u'literal', _Delta_seq_literal), ]) Delta_seq._ext = None #-----< Seq-literal >-----# Seq_literal = SEQ(name=u'Seq-literal', mode=MODE_TYPE) _Seq_literal_length = INT(name=u'length', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_literal_fuzz = CHOICE(name=u'fuzz', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) _Seq_literal_seq_data = CHOICE(name=u'seq-data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-data')), opt=True) Seq_literal._cont = ASN1Dict([ (u'length', _Seq_literal_length), (u'fuzz', _Seq_literal_fuzz), (u'seq-data', _Seq_literal_seq_data), ]) Seq_literal._ext = None #-----< Seq-hist >-----# Seq_hist = SEQ(name=u'Seq-hist', mode=MODE_TYPE) _Seq_hist_assembly = SET_OF(name=u'assembly', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_hist_assembly__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) _Seq_hist_assembly._cont = __Seq_hist_assembly__item_ _Seq_hist_replaces = SEQ(name=u'replaces', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-hist-rec')), opt=True) _Seq_hist_replaced_by = SEQ(name=u'replaced-by', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-hist-rec')), opt=True) _Seq_hist_deleted = CHOICE(name=u'deleted', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __Seq_hist_deleted_bool = BOOL(name=u'bool', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seq_hist_deleted_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Seq_hist_deleted._cont = ASN1Dict([ (u'bool', __Seq_hist_deleted_bool), (u'date', __Seq_hist_deleted_date), ]) _Seq_hist_deleted._ext = None Seq_hist._cont = ASN1Dict([ (u'assembly', _Seq_hist_assembly), (u'replaces', _Seq_hist_replaces), (u'replaced-by', _Seq_hist_replaced_by), (u'deleted', _Seq_hist_deleted), ]) Seq_hist._ext = None #-----< Seq-hist-rec >-----# Seq_hist_rec = SEQ(name=u'Seq-hist-rec', mode=MODE_TYPE) _Seq_hist_rec_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Seq_hist_rec_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seq_hist_rec_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Seq_hist_rec_ids._cont = __Seq_hist_rec_ids__item_ Seq_hist_rec._cont = ASN1Dict([ (u'date', _Seq_hist_rec_date), (u'ids', _Seq_hist_rec_ids), ]) Seq_hist_rec._ext = None #-----< Seq-data >-----# Seq_data = CHOICE(name=u'Seq-data', mode=MODE_TYPE) _Seq_data_iupacna = OCT_STR(name=u'iupacna', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'IUPACna'))) _Seq_data_iupacaa = OCT_STR(name=u'iupacaa', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'IUPACaa'))) _Seq_data_ncbi2na = OCT_STR(name=u'ncbi2na', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBI2na'))) _Seq_data_ncbi4na = OCT_STR(name=u'ncbi4na', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBI4na'))) _Seq_data_ncbi8na = OCT_STR(name=u'ncbi8na', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBI8na'))) _Seq_data_ncbipna = OCT_STR(name=u'ncbipna', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBIpna'))) _Seq_data_ncbi8aa = OCT_STR(name=u'ncbi8aa', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBI8aa'))) _Seq_data_ncbieaa = OCT_STR(name=u'ncbieaa', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBIeaa'))) _Seq_data_ncbipaa = OCT_STR(name=u'ncbipaa', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBIpaa'))) _Seq_data_ncbistdaa = OCT_STR(name=u'ncbistdaa', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'NCBIstdaa'))) _Seq_data_gap = SEQ(name=u'gap', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-gap'))) Seq_data._cont = ASN1Dict([ (u'iupacna', _Seq_data_iupacna), (u'iupacaa', _Seq_data_iupacaa), (u'ncbi2na', _Seq_data_ncbi2na), (u'ncbi4na', _Seq_data_ncbi4na), (u'ncbi8na', _Seq_data_ncbi8na), (u'ncbipna', _Seq_data_ncbipna), (u'ncbi8aa', _Seq_data_ncbi8aa), (u'ncbieaa', _Seq_data_ncbieaa), (u'ncbipaa', _Seq_data_ncbipaa), (u'ncbistdaa', _Seq_data_ncbistdaa), (u'gap', _Seq_data_gap), ]) Seq_data._ext = None #-----< Seq-gap >-----# Seq_gap = SEQ(name=u'Seq-gap', mode=MODE_TYPE) _Seq_gap_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_gap_type._cont = ASN1Dict([(u'unknown', 0), (u'fragment', 1), (u'clone', 2), (u'short-arm', 3), (u'heterochromatin', 4), (u'centromere', 5), (u'telomere', 6), (u'repeat', 7), (u'contig', 8), (u'scaffold', 9), (u'other', 255)]) _Seq_gap_linkage = INT(name=u'linkage', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_gap_linkage._cont = ASN1Dict([(u'unlinked', 0), (u'linked', 1), (u'other', 255)]) _Seq_gap_linkage_evidence = SET_OF(name=u'linkage-evidence', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_gap_linkage_evidence__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Linkage-evidence'))) _Seq_gap_linkage_evidence._cont = __Seq_gap_linkage_evidence__item_ Seq_gap._cont = ASN1Dict([ (u'type', _Seq_gap_type), (u'linkage', _Seq_gap_linkage), (u'linkage-evidence', _Seq_gap_linkage_evidence), ]) Seq_gap._ext = None #-----< Linkage-evidence >-----# Linkage_evidence = SEQ(name=u'Linkage-evidence', mode=MODE_TYPE) _Linkage_evidence_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Linkage_evidence_type._cont = ASN1Dict([(u'paired-ends', 0), (u'align-genus', 1), (u'align-xgenus', 2), (u'align-trnscpt', 3), (u'within-clone', 4), (u'clone-contig', 5), (u'map', 6), (u'strobe', 7), (u'unspecified', 8), (u'pcr', 9), (u'other', 255)]) Linkage_evidence._cont = ASN1Dict([ (u'type', _Linkage_evidence_type), ]) Linkage_evidence._ext = None #-----< IUPACna >-----# IUPACna = OCT_STR(name=u'IUPACna', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'StringStore'))) #-----< IUPACaa >-----# IUPACaa = OCT_STR(name=u'IUPACaa', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'StringStore'))) #-----< NCBI2na >-----# NCBI2na = OCT_STR(name=u'NCBI2na', mode=MODE_TYPE) #-----< NCBI4na >-----# NCBI4na = OCT_STR(name=u'NCBI4na', mode=MODE_TYPE) #-----< NCBI8na >-----# NCBI8na = OCT_STR(name=u'NCBI8na', mode=MODE_TYPE) #-----< NCBIpna >-----# NCBIpna = OCT_STR(name=u'NCBIpna', mode=MODE_TYPE) #-----< NCBI8aa >-----# NCBI8aa = OCT_STR(name=u'NCBI8aa', mode=MODE_TYPE) #-----< NCBIeaa >-----# NCBIeaa = OCT_STR(name=u'NCBIeaa', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'StringStore'))) #-----< NCBIpaa >-----# NCBIpaa = OCT_STR(name=u'NCBIpaa', mode=MODE_TYPE) #-----< NCBIstdaa >-----# NCBIstdaa = OCT_STR(name=u'NCBIstdaa', mode=MODE_TYPE) #-----< Textannot-id >-----# Textannot_id = SEQ(name=u'Textannot-id', mode=MODE_TYPE) _Textannot_id_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Textannot_id_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Textannot_id_release = STR_VIS(name=u'release', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Textannot_id_version = INT(name=u'version', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Textannot_id._cont = ASN1Dict([ (u'name', _Textannot_id_name), (u'accession', _Textannot_id_accession), (u'release', _Textannot_id_release), (u'version', _Textannot_id_version), ]) Textannot_id._ext = None #-----< Annot-id >-----# Annot_id = CHOICE(name=u'Annot-id', mode=MODE_TYPE) _Annot_id_local = CHOICE(name=u'local', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _Annot_id_ncbi = INT(name=u'ncbi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Annot_id_general = SEQ(name=u'general', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Annot_id_other = SEQ(name=u'other', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Textannot-id'))) Annot_id._cont = ASN1Dict([ (u'local', _Annot_id_local), (u'ncbi', _Annot_id_ncbi), (u'general', _Annot_id_general), (u'other', _Annot_id_other), ]) Annot_id._ext = None #-----< Annot-descr >-----# Annot_descr = SET_OF(name=u'Annot-descr', mode=MODE_TYPE) _Annot_descr__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Annotdesc'))) Annot_descr._cont = _Annot_descr__item_ #-----< Annotdesc >-----# Annotdesc = CHOICE(name=u'Annotdesc', mode=MODE_TYPE) _Annotdesc_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Annotdesc_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Annotdesc_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Annotdesc_pub = SEQ(name=u'pub', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Pubdesc'))) _Annotdesc_user = SEQ(name=u'user', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object'))) _Annotdesc_create_date = CHOICE(name=u'create-date', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Annotdesc_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _Annotdesc_src = CHOICE(name=u'src', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Annotdesc_align = SEQ(name=u'align', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Align-def'))) _Annotdesc_region = CHOICE(name=u'region', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) Annotdesc._cont = ASN1Dict([ (u'name', _Annotdesc_name), (u'title', _Annotdesc_title), (u'comment', _Annotdesc_comment), (u'pub', _Annotdesc_pub), (u'user', _Annotdesc_user), (u'create-date', _Annotdesc_create_date), (u'update-date', _Annotdesc_update_date), (u'src', _Annotdesc_src), (u'align', _Annotdesc_align), (u'region', _Annotdesc_region), ]) Annotdesc._ext = None #-----< Align-def >-----# Align_def = SEQ(name=u'Align-def', mode=MODE_TYPE) _Align_def_align_type = INT(name=u'align-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Align_def_align_type._cont = ASN1Dict([(u'ref', 1), (u'alt', 2), (u'blocks', 3), (u'other', 255)]) _Align_def_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Align_def_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Align_def_ids._cont = __Align_def_ids__item_ Align_def._cont = ASN1Dict([ (u'align-type', _Align_def_align_type), (u'ids', _Align_def_ids), ]) Align_def._ext = None #-----< Seq-annot >-----# Seq_annot = SEQ(name=u'Seq-annot', mode=MODE_TYPE) _Seq_annot_id = SET_OF(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_annot_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Annot-id'))) _Seq_annot_id._cont = __Seq_annot_id__item_ _Seq_annot_db = INT(name=u'db', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_annot_db._cont = ASN1Dict([(u'genbank', 1), (u'embl', 2), (u'ddbj', 3), (u'pir', 4), (u'sp', 5), (u'bbone', 6), (u'pdb', 7), (u'other', 255)]) _Seq_annot_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_annot_desc = SET_OF(name=u'desc', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Annot-descr')), opt=True) _Seq_annot_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Seq_annot_data_ftable = SET_OF(name=u'ftable', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_annot_data_ftable__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Seq-feat'))) __Seq_annot_data_ftable._cont = ___Seq_annot_data_ftable__item_ __Seq_annot_data_align = SET_OF(name=u'align', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_annot_data_align__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) __Seq_annot_data_align._cont = ___Seq_annot_data_align__item_ __Seq_annot_data_graph = SET_OF(name=u'graph', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_annot_data_graph__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqres', 'Seq-graph'))) __Seq_annot_data_graph._cont = ___Seq_annot_data_graph__item_ __Seq_annot_data_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_annot_data_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) __Seq_annot_data_ids._cont = ___Seq_annot_data_ids__item_ __Seq_annot_data_locs = SET_OF(name=u'locs', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_annot_data_locs__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) __Seq_annot_data_locs._cont = ___Seq_annot_data_locs__item_ __Seq_annot_data_seq_table = SEQ(name=u'seq-table', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'Seq-table'))) _Seq_annot_data._cont = ASN1Dict([ (u'ftable', __Seq_annot_data_ftable), (u'align', __Seq_annot_data_align), (u'graph', __Seq_annot_data_graph), (u'ids', __Seq_annot_data_ids), (u'locs', __Seq_annot_data_locs), (u'seq-table', __Seq_annot_data_seq_table), ]) _Seq_annot_data._ext = None Seq_annot._cont = ASN1Dict([ (u'id', _Seq_annot_id), (u'db', _Seq_annot_db), (u'name', _Seq_annot_name), (u'desc', _Seq_annot_desc), (u'data', _Seq_annot_data), ]) Seq_annot._ext = None _all_ = [ StringStore, __Bioseq_id__item_, _Bioseq_id, _Bioseq_descr, _Bioseq_inst, __Bioseq_annot__item_, _Bioseq_annot, Bioseq, _Seq_descr__item_, Seq_descr, _Seqdesc_mol_type, __Seqdesc_modif__item_, _Seqdesc_modif, _Seqdesc_method, _Seqdesc_name, _Seqdesc_title, _Seqdesc_org, _Seqdesc_comment, _Seqdesc_num, _Seqdesc_maploc, _Seqdesc_pir, _Seqdesc_genbank, _Seqdesc_pub, _Seqdesc_region, _Seqdesc_user, _Seqdesc_sp, _Seqdesc_dbxref, _Seqdesc_embl, _Seqdesc_create_date, _Seqdesc_update_date, _Seqdesc_prf, _Seqdesc_pdb, _Seqdesc_het, _Seqdesc_source, _Seqdesc_molinfo, _Seqdesc_modelev, Seqdesc, _MolInfo_biomol, _MolInfo_tech, _MolInfo_techexp, _MolInfo_completeness, _MolInfo_gbmoltype, MolInfo, GIBB_mol, GIBB_mod, GIBB_method, _Numbering_cont, _Numbering_enum, _Numbering_ref, _Numbering_real, Numbering, _Num_cont_refnum, _Num_cont_has_zero, _Num_cont_ascending, Num_cont, _Num_enum_num, __Num_enum_names__item_, _Num_enum_names, Num_enum, _Num_ref_type, _Num_ref_aligns, Num_ref, _Num_real_a, _Num_real_b, _Num_real_units, Num_real, _Pubdesc_pub, _Pubdesc_name, _Pubdesc_fig, _Pubdesc_num, _Pubdesc_numexc, _Pubdesc_poly_a, _Pubdesc_maploc, _Pubdesc_seq_raw, _Pubdesc_align_group, _Pubdesc_comment, _Pubdesc_reftype, Pubdesc, Heterogen, _Seq_inst_repr, _Seq_inst_mol, _Seq_inst_length, _Seq_inst_fuzz, _Seq_inst_topology, _Seq_inst_strand, _Seq_inst_seq_data, _Seq_inst_ext, _Seq_inst_hist, Seq_inst, _Seq_ext_seg, _Seq_ext_ref, _Seq_ext_map, _Seq_ext_delta, Seq_ext, _Seg_ext__item_, Seg_ext, Ref_ext, _Map_ext__item_, Map_ext, _Delta_ext__item_, Delta_ext, _Delta_seq_loc, _Delta_seq_literal, Delta_seq, _Seq_literal_length, _Seq_literal_fuzz, _Seq_literal_seq_data, Seq_literal, __Seq_hist_assembly__item_, _Seq_hist_assembly, _Seq_hist_replaces, _Seq_hist_replaced_by, __Seq_hist_deleted_bool, __Seq_hist_deleted_date, _Seq_hist_deleted, Seq_hist, _Seq_hist_rec_date, __Seq_hist_rec_ids__item_, _Seq_hist_rec_ids, Seq_hist_rec, _Seq_data_iupacna, _Seq_data_iupacaa, _Seq_data_ncbi2na, _Seq_data_ncbi4na, _Seq_data_ncbi8na, _Seq_data_ncbipna, _Seq_data_ncbi8aa, _Seq_data_ncbieaa, _Seq_data_ncbipaa, _Seq_data_ncbistdaa, _Seq_data_gap, Seq_data, _Seq_gap_type, _Seq_gap_linkage, __Seq_gap_linkage_evidence__item_, _Seq_gap_linkage_evidence, Seq_gap, _Linkage_evidence_type, Linkage_evidence, IUPACna, IUPACaa, NCBI2na, NCBI4na, NCBI8na, NCBIpna, NCBI8aa, NCBIeaa, NCBIpaa, NCBIstdaa, _Textannot_id_name, _Textannot_id_accession, _Textannot_id_release, _Textannot_id_version, Textannot_id, _Annot_id_local, _Annot_id_ncbi, _Annot_id_general, _Annot_id_other, Annot_id, _Annot_descr__item_, Annot_descr, _Annotdesc_name, _Annotdesc_title, _Annotdesc_comment, _Annotdesc_pub, _Annotdesc_user, _Annotdesc_create_date, _Annotdesc_update_date, _Annotdesc_src, _Annotdesc_align, _Annotdesc_region, Annotdesc, _Align_def_align_type, __Align_def_ids__item_, _Align_def_ids, Align_def, __Seq_annot_id__item_, _Seq_annot_id, _Seq_annot_db, _Seq_annot_name, _Seq_annot_desc, ___Seq_annot_data_ftable__item_, __Seq_annot_data_ftable, ___Seq_annot_data_align__item_, __Seq_annot_data_align, ___Seq_annot_data_graph__item_, __Seq_annot_data_graph, ___Seq_annot_data_ids__item_, __Seq_annot_data_ids, ___Seq_annot_data_locs__item_, __Seq_annot_data_locs, __Seq_annot_data_seq_table, _Seq_annot_data, Seq_annot, ] class EMBL_General: _name_ = u'EMBL-General' _oid_ = [] _obj_ = [ u'EMBL-dbname', u'EMBL-xref', u'EMBL-block', ] _type_ = [ u'EMBL-dbname', u'EMBL-xref', u'EMBL-block', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< EMBL-dbname >-----# EMBL_dbname = CHOICE(name=u'EMBL-dbname', mode=MODE_TYPE) _EMBL_dbname_code = ENUM(name=u'code', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _EMBL_dbname_code._cont = ASN1Dict([(u'embl', 0), (u'genbank', 1), (u'ddbj', 2), (u'geninfo', 3), (u'medline', 4), (u'swissprot', 5), (u'pir', 6), (u'pdb', 7), (u'epd', 8), (u'ecd', 9), (u'tfd', 10), (u'flybase', 11), (u'prosite', 12), (u'enzyme', 13), (u'mim', 14), (u'ecoseq', 15), (u'hiv', 16), (u'other', 255)]) _EMBL_dbname_code._ext = None _EMBL_dbname_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) EMBL_dbname._cont = ASN1Dict([ (u'code', _EMBL_dbname_code), (u'name', _EMBL_dbname_name), ]) EMBL_dbname._ext = None #-----< EMBL-xref >-----# EMBL_xref = SEQ(name=u'EMBL-xref', mode=MODE_TYPE) _EMBL_xref_dbname = CHOICE(name=u'dbname', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('EMBL-General', 'EMBL-dbname'))) _EMBL_xref_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __EMBL_xref_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _EMBL_xref_id._cont = __EMBL_xref_id__item_ EMBL_xref._cont = ASN1Dict([ (u'dbname', _EMBL_xref_dbname), (u'id', _EMBL_xref_id), ]) EMBL_xref._ext = None #-----< EMBL-block >-----# EMBL_block = SEQ(name=u'EMBL-block', mode=MODE_TYPE) _EMBL_block_class_ = ENUM(name=u'class', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'standard') _EMBL_block_class_._cont = ASN1Dict([(u'not-set', 0), (u'standard', 1), (u'unannotated', 2), (u'other', 255)]) _EMBL_block_class_._ext = None _EMBL_block_div = ENUM(name=u'div', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _EMBL_block_div._cont = ASN1Dict([(u'fun', 0), (u'inv', 1), (u'mam', 2), (u'org', 3), (u'phg', 4), (u'pln', 5), (u'pri', 6), (u'pro', 7), (u'rod', 8), (u'syn', 9), (u'una', 10), (u'vrl', 11), (u'vrt', 12), (u'pat', 13), (u'est', 14), (u'sts', 15), (u'other', 255)]) _EMBL_block_div._ext = None _EMBL_block_creation_date = CHOICE(name=u'creation-date', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _EMBL_block_update_date = CHOICE(name=u'update-date', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _EMBL_block_extra_acc = SEQ_OF(name=u'extra-acc', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __EMBL_block_extra_acc__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _EMBL_block_extra_acc._cont = __EMBL_block_extra_acc__item_ _EMBL_block_keywords = SEQ_OF(name=u'keywords', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __EMBL_block_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _EMBL_block_keywords._cont = __EMBL_block_keywords__item_ _EMBL_block_xref = SEQ_OF(name=u'xref', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __EMBL_block_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('EMBL-General', 'EMBL-xref'))) _EMBL_block_xref._cont = __EMBL_block_xref__item_ EMBL_block._cont = ASN1Dict([ (u'class', _EMBL_block_class_), (u'div', _EMBL_block_div), (u'creation-date', _EMBL_block_creation_date), (u'update-date', _EMBL_block_update_date), (u'extra-acc', _EMBL_block_extra_acc), (u'keywords', _EMBL_block_keywords), (u'xref', _EMBL_block_xref), ]) EMBL_block._ext = None _all_ = [ _EMBL_dbname_code, _EMBL_dbname_name, EMBL_dbname, _EMBL_xref_dbname, __EMBL_xref_id__item_, _EMBL_xref_id, EMBL_xref, _EMBL_block_class_, _EMBL_block_div, _EMBL_block_creation_date, _EMBL_block_update_date, __EMBL_block_extra_acc__item_, _EMBL_block_extra_acc, __EMBL_block_keywords__item_, _EMBL_block_keywords, __EMBL_block_xref__item_, _EMBL_block_xref, EMBL_block, ] class SP_General: _name_ = u'SP-General' _oid_ = [] _obj_ = [ u'SP-block', ] _type_ = [ u'SP-block', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< SP-block >-----# SP_block = SEQ(name=u'SP-block', mode=MODE_TYPE) _SP_block_class_ = ENUM(name=u'class', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SP_block_class_._cont = ASN1Dict([(u'not-set', 0), (u'standard', 1), (u'prelim', 2), (u'other', 255)]) _SP_block_class_._ext = None _SP_block_extra_acc = SET_OF(name=u'extra-acc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SP_block_extra_acc__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _SP_block_extra_acc._cont = __SP_block_extra_acc__item_ _SP_block_imeth = BOOL(name=u'imeth', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _SP_block_plasnm = SET_OF(name=u'plasnm', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SP_block_plasnm__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _SP_block_plasnm._cont = __SP_block_plasnm__item_ _SP_block_seqref = SET_OF(name=u'seqref', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SP_block_seqref__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _SP_block_seqref._cont = __SP_block_seqref__item_ _SP_block_dbref = SET_OF(name=u'dbref', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SP_block_dbref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _SP_block_dbref._cont = __SP_block_dbref__item_ _SP_block_keywords = SET_OF(name=u'keywords', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SP_block_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _SP_block_keywords._cont = __SP_block_keywords__item_ _SP_block_created = CHOICE(name=u'created', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _SP_block_sequpd = CHOICE(name=u'sequpd', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _SP_block_annotupd = CHOICE(name=u'annotupd', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) SP_block._cont = ASN1Dict([ (u'class', _SP_block_class_), (u'extra-acc', _SP_block_extra_acc), (u'imeth', _SP_block_imeth), (u'plasnm', _SP_block_plasnm), (u'seqref', _SP_block_seqref), (u'dbref', _SP_block_dbref), (u'keywords', _SP_block_keywords), (u'created', _SP_block_created), (u'sequpd', _SP_block_sequpd), (u'annotupd', _SP_block_annotupd), ]) SP_block._ext = None _all_ = [ _SP_block_class_, __SP_block_extra_acc__item_, _SP_block_extra_acc, _SP_block_imeth, __SP_block_plasnm__item_, _SP_block_plasnm, __SP_block_seqref__item_, _SP_block_seqref, __SP_block_dbref__item_, _SP_block_dbref, __SP_block_keywords__item_, _SP_block_keywords, _SP_block_created, _SP_block_sequpd, _SP_block_annotupd, SP_block, ] class PIR_General: _name_ = u'PIR-General' _oid_ = [] _obj_ = [ u'PIR-block', ] _type_ = [ u'PIR-block', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< PIR-block >-----# PIR_block = SEQ(name=u'PIR-block', mode=MODE_TYPE) _PIR_block_had_punct = BOOL(name=u'had-punct', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_host = STR_VIS(name=u'host', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_summary = STR_VIS(name=u'summary', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_genetic = STR_VIS(name=u'genetic', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_includes = STR_VIS(name=u'includes', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_placement = STR_VIS(name=u'placement', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_superfamily = STR_VIS(name=u'superfamily', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_keywords = SEQ_OF(name=u'keywords', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PIR_block_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PIR_block_keywords._cont = __PIR_block_keywords__item_ _PIR_block_cross_reference = STR_VIS(name=u'cross-reference', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_date = STR_VIS(name=u'date', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_seq_raw = STR_VIS(name=u'seq-raw', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PIR_block_seqref = SET_OF(name=u'seqref', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PIR_block_seqref__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _PIR_block_seqref._cont = __PIR_block_seqref__item_ PIR_block._cont = ASN1Dict([ (u'had-punct', _PIR_block_had_punct), (u'host', _PIR_block_host), (u'source', _PIR_block_source), (u'summary', _PIR_block_summary), (u'genetic', _PIR_block_genetic), (u'includes', _PIR_block_includes), (u'placement', _PIR_block_placement), (u'superfamily', _PIR_block_superfamily), (u'keywords', _PIR_block_keywords), (u'cross-reference', _PIR_block_cross_reference), (u'date', _PIR_block_date), (u'seq-raw', _PIR_block_seq_raw), (u'seqref', _PIR_block_seqref), ]) PIR_block._ext = None _all_ = [ _PIR_block_had_punct, _PIR_block_host, _PIR_block_source, _PIR_block_summary, _PIR_block_genetic, _PIR_block_includes, _PIR_block_placement, _PIR_block_superfamily, __PIR_block_keywords__item_, _PIR_block_keywords, _PIR_block_cross_reference, _PIR_block_date, _PIR_block_seq_raw, __PIR_block_seqref__item_, _PIR_block_seqref, PIR_block, ] class GenBank_General: _name_ = u'GenBank-General' _oid_ = [] _obj_ = [ u'GB-block', ] _type_ = [ u'GB-block', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< GB-block >-----# GB_block = SEQ(name=u'GB-block', mode=MODE_TYPE) _GB_block_extra_accessions = SEQ_OF(name=u'extra-accessions', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GB_block_extra_accessions__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _GB_block_extra_accessions._cont = __GB_block_extra_accessions__item_ _GB_block_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GB_block_keywords = SEQ_OF(name=u'keywords', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __GB_block_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _GB_block_keywords._cont = __GB_block_keywords__item_ _GB_block_origin = STR_VIS(name=u'origin', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GB_block_date = STR_VIS(name=u'date', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GB_block_entry_date = CHOICE(name=u'entry-date', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _GB_block_div = STR_VIS(name=u'div', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _GB_block_taxonomy = STR_VIS(name=u'taxonomy', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) GB_block._cont = ASN1Dict([ (u'extra-accessions', _GB_block_extra_accessions), (u'source', _GB_block_source), (u'keywords', _GB_block_keywords), (u'origin', _GB_block_origin), (u'date', _GB_block_date), (u'entry-date', _GB_block_entry_date), (u'div', _GB_block_div), (u'taxonomy', _GB_block_taxonomy), ]) GB_block._ext = None _all_ = [ __GB_block_extra_accessions__item_, _GB_block_extra_accessions, _GB_block_source, __GB_block_keywords__item_, _GB_block_keywords, _GB_block_origin, _GB_block_date, _GB_block_entry_date, _GB_block_div, _GB_block_taxonomy, GB_block, ] class PRF_General: _name_ = u'PRF-General' _oid_ = [] _obj_ = [ u'PRF-block', u'PRF-ExtraSrc', ] _type_ = [ u'PRF-block', u'PRF-ExtraSrc', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< PRF-block >-----# PRF_block = SEQ(name=u'PRF-block', mode=MODE_TYPE) _PRF_block_extra_src = SEQ(name=u'extra-src', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('PRF-General', 'PRF-ExtraSrc')), opt=True) _PRF_block_keywords = SEQ_OF(name=u'keywords', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __PRF_block_keywords__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PRF_block_keywords._cont = __PRF_block_keywords__item_ PRF_block._cont = ASN1Dict([ (u'extra-src', _PRF_block_extra_src), (u'keywords', _PRF_block_keywords), ]) PRF_block._ext = None #-----< PRF-ExtraSrc >-----# PRF_ExtraSrc = SEQ(name=u'PRF-ExtraSrc', mode=MODE_TYPE) _PRF_ExtraSrc_host = STR_VIS(name=u'host', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PRF_ExtraSrc_part = STR_VIS(name=u'part', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PRF_ExtraSrc_state = STR_VIS(name=u'state', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PRF_ExtraSrc_strain = STR_VIS(name=u'strain', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PRF_ExtraSrc_taxon = STR_VIS(name=u'taxon', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) PRF_ExtraSrc._cont = ASN1Dict([ (u'host', _PRF_ExtraSrc_host), (u'part', _PRF_ExtraSrc_part), (u'state', _PRF_ExtraSrc_state), (u'strain', _PRF_ExtraSrc_strain), (u'taxon', _PRF_ExtraSrc_taxon), ]) PRF_ExtraSrc._ext = None _all_ = [ _PRF_block_extra_src, __PRF_block_keywords__item_, _PRF_block_keywords, PRF_block, _PRF_ExtraSrc_host, _PRF_ExtraSrc_part, _PRF_ExtraSrc_state, _PRF_ExtraSrc_strain, _PRF_ExtraSrc_taxon, PRF_ExtraSrc, ] class PDB_General: _name_ = u'PDB-General' _oid_ = [] _obj_ = [ u'PDB-block', u'PDB-replace', ] _type_ = [ u'PDB-block', u'PDB-replace', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< PDB-block >-----# PDB_block = SEQ(name=u'PDB-block', mode=MODE_TYPE) _PDB_block_deposition = CHOICE(name=u'deposition', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _PDB_block_class_ = STR_VIS(name=u'class', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _PDB_block_compound = SEQ_OF(name=u'compound', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PDB_block_compound__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PDB_block_compound._cont = __PDB_block_compound__item_ _PDB_block_source = SEQ_OF(name=u'source', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PDB_block_source__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PDB_block_source._cont = __PDB_block_source__item_ _PDB_block_exp_method = STR_VIS(name=u'exp-method', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _PDB_block_replace = SEQ(name=u'replace', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('PDB-General', 'PDB-replace')), opt=True) PDB_block._cont = ASN1Dict([ (u'deposition', _PDB_block_deposition), (u'class', _PDB_block_class_), (u'compound', _PDB_block_compound), (u'source', _PDB_block_source), (u'exp-method', _PDB_block_exp_method), (u'replace', _PDB_block_replace), ]) PDB_block._ext = None #-----< PDB-replace >-----# PDB_replace = SEQ(name=u'PDB-replace', mode=MODE_TYPE) _PDB_replace_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date'))) _PDB_replace_ids = SEQ_OF(name=u'ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __PDB_replace_ids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _PDB_replace_ids._cont = __PDB_replace_ids__item_ PDB_replace._cont = ASN1Dict([ (u'date', _PDB_replace_date), (u'ids', _PDB_replace_ids), ]) PDB_replace._ext = None _all_ = [ _PDB_block_deposition, _PDB_block_class_, __PDB_block_compound__item_, _PDB_block_compound, __PDB_block_source__item_, _PDB_block_source, _PDB_block_exp_method, _PDB_block_replace, PDB_block, _PDB_replace_date, __PDB_replace_ids__item_, _PDB_replace_ids, PDB_replace, ] class NCBI_SeqCode: _name_ = u'NCBI-SeqCode' _oid_ = [] _obj_ = [ u'Seq-code-type', u'Seq-map-table', u'Seq-code-table', u'Seq-code-set', ] _type_ = [ u'Seq-code-type', u'Seq-map-table', u'Seq-code-table', u'Seq-code-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Seq-code-type >-----# Seq_code_type = ENUM(name=u'Seq-code-type', mode=MODE_TYPE) Seq_code_type._cont = ASN1Dict([(u'iupacna', 1), (u'iupacaa', 2), (u'ncbi2na', 3), (u'ncbi4na', 4), (u'ncbi8na', 5), (u'ncbipna', 6), (u'ncbi8aa', 7), (u'ncbieaa', 8), (u'ncbipaa', 9), (u'iupacaa3', 10), (u'ncbistdaa', 11)]) Seq_code_type._ext = None #-----< Seq-map-table >-----# Seq_map_table = SEQ(name=u'Seq-map-table', mode=MODE_TYPE) _Seq_map_table_from_ = ENUM(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqCode', 'Seq-code-type'))) _Seq_map_table_to = ENUM(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqCode', 'Seq-code-type'))) _Seq_map_table_num = INT(name=u'num', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_map_table_start_at = INT(name=u'start-at', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _Seq_map_table_table = SEQ_OF(name=u'table', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seq_map_table_table__item_ = INT(name='_item_', mode=MODE_TYPE) _Seq_map_table_table._cont = __Seq_map_table_table__item_ Seq_map_table._cont = ASN1Dict([ (u'from', _Seq_map_table_from_), (u'to', _Seq_map_table_to), (u'num', _Seq_map_table_num), (u'start-at', _Seq_map_table_start_at), (u'table', _Seq_map_table_table), ]) Seq_map_table._ext = None #-----< Seq-code-table >-----# Seq_code_table = SEQ(name=u'Seq-code-table', mode=MODE_TYPE) _Seq_code_table_code = ENUM(name=u'code', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqCode', 'Seq-code-type'))) _Seq_code_table_num = INT(name=u'num', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_code_table_one_letter = BOOL(name=u'one-letter', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_code_table_start_at = INT(name=u'start-at', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _Seq_code_table_table = SEQ_OF(name=u'table', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seq_code_table_table__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Seq_code_table_table__item__symbol = STR_VIS(name=u'symbol', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_code_table_table__item__name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seq_code_table_table__item_._cont = ASN1Dict([ (u'symbol', ___Seq_code_table_table__item__symbol), (u'name', ___Seq_code_table_table__item__name), ]) __Seq_code_table_table__item_._ext = None _Seq_code_table_table._cont = __Seq_code_table_table__item_ _Seq_code_table_comps = SEQ_OF(name=u'comps', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_code_table_comps__item_ = INT(name='_item_', mode=MODE_TYPE) _Seq_code_table_comps._cont = __Seq_code_table_comps__item_ Seq_code_table._cont = ASN1Dict([ (u'code', _Seq_code_table_code), (u'num', _Seq_code_table_num), (u'one-letter', _Seq_code_table_one_letter), (u'start-at', _Seq_code_table_start_at), (u'table', _Seq_code_table_table), (u'comps', _Seq_code_table_comps), ]) Seq_code_table._ext = None #-----< Seq-code-set >-----# Seq_code_set = SEQ(name=u'Seq-code-set', mode=MODE_TYPE) _Seq_code_set_codes = SET_OF(name=u'codes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_code_set_codes__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-SeqCode', 'Seq-code-table'))) _Seq_code_set_codes._cont = __Seq_code_set_codes__item_ _Seq_code_set_maps = SET_OF(name=u'maps', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_code_set_maps__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-SeqCode', 'Seq-map-table'))) _Seq_code_set_maps._cont = __Seq_code_set_maps__item_ Seq_code_set._cont = ASN1Dict([ (u'codes', _Seq_code_set_codes), (u'maps', _Seq_code_set_maps), ]) Seq_code_set._ext = None _all_ = [ Seq_code_type, _Seq_map_table_from_, _Seq_map_table_to, _Seq_map_table_num, _Seq_map_table_start_at, __Seq_map_table_table__item_, _Seq_map_table_table, Seq_map_table, _Seq_code_table_code, _Seq_code_table_num, _Seq_code_table_one_letter, _Seq_code_table_start_at, ___Seq_code_table_table__item__symbol, ___Seq_code_table_table__item__name, __Seq_code_table_table__item_, _Seq_code_table_table, __Seq_code_table_comps__item_, _Seq_code_table_comps, Seq_code_table, __Seq_code_set_codes__item_, _Seq_code_set_codes, __Seq_code_set_maps__item_, _Seq_code_set_maps, Seq_code_set, ] class NCBI_Seqfeat: _name_ = u'NCBI-Seqfeat' _oid_ = [] _obj_ = [ u'Feat-id', u'Seq-feat', u'SeqFeatData', u'SeqFeatXref', u'SeqFeatSupport', u'EvidenceCategory', u'ExperimentSupport', u'Program-id', u'EvidenceBasis', u'InferenceSupport', u'ModelEvidenceItem', u'ModelEvidenceSupport', u'Cdregion', u'Genetic-code', u'Code-break', u'Genetic-code-table', u'Imp-feat', u'Gb-qual', u'Clone-ref', u'Clone-seq-set', u'Clone-seq', ] _type_ = [ u'Feat-id', u'Seq-feat', u'SeqFeatData', u'SeqFeatXref', u'SeqFeatSupport', u'EvidenceCategory', u'ExperimentSupport', u'Program-id', u'EvidenceBasis', u'InferenceSupport', u'ModelEvidenceItem', u'ModelEvidenceSupport', u'Cdregion', u'Genetic-code', u'Code-break', u'Genetic-code-table', u'Imp-feat', u'Gb-qual', u'Clone-ref', u'Clone-seq-set', u'Clone-seq', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Feat-id >-----# Feat_id = CHOICE(name=u'Feat-id', mode=MODE_TYPE) _Feat_id_gibb = INT(name=u'gibb', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Feat_id_giim = SEQ(name=u'giim', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Giimport-id'))) _Feat_id_local = CHOICE(name=u'local', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _Feat_id_general = SEQ(name=u'general', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) Feat_id._cont = ASN1Dict([ (u'gibb', _Feat_id_gibb), (u'giim', _Feat_id_giim), (u'local', _Feat_id_local), (u'general', _Feat_id_general), ]) Feat_id._ext = None #-----< Seq-feat >-----# Seq_feat = SEQ(name=u'Seq-feat', mode=MODE_TYPE) _Seq_feat_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Feat-id')), opt=True) _Seq_feat_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'SeqFeatData'))) _Seq_feat_partial = BOOL(name=u'partial', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_except_ = BOOL(name=u'except', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_product = CHOICE(name=u'product', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) _Seq_feat_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Seq_feat_qual = SEQ_OF(name=u'qual', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_feat_qual__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Gb-qual'))) _Seq_feat_qual._cont = __Seq_feat_qual__item_ _Seq_feat_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_ext = SEQ(name=u'ext', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object')), opt=True) _Seq_feat_cit = CHOICE(name=u'cit', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub-set')), opt=True) _Seq_feat_exp_ev = ENUM(name=u'exp-ev', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_exp_ev._cont = ASN1Dict([(u'experimental', 1), (u'not-experimental', 2)]) _Seq_feat_exp_ev._ext = None _Seq_feat_xref = SET_OF(name=u'xref', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_feat_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'SeqFeatXref'))) _Seq_feat_xref._cont = __Seq_feat_xref__item_ _Seq_feat_dbxref = SET_OF(name=u'dbxref', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_feat_dbxref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Seq_feat_dbxref._cont = __Seq_feat_dbxref__item_ _Seq_feat_pseudo = BOOL(name=u'pseudo', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_except_text = STR_VIS(name=u'except-text', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_feat_ids = SET_OF(name=u'ids', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_feat_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Feat-id'))) _Seq_feat_ids._cont = __Seq_feat_ids__item_ _Seq_feat_exts = SET_OF(name=u'exts', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Seq_feat_exts__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'User-object'))) _Seq_feat_exts._cont = __Seq_feat_exts__item_ _Seq_feat_support = SEQ(name=u'support', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'SeqFeatSupport')), opt=True) Seq_feat._cont = ASN1Dict([ (u'id', _Seq_feat_id), (u'data', _Seq_feat_data), (u'partial', _Seq_feat_partial), (u'except', _Seq_feat_except_), (u'comment', _Seq_feat_comment), (u'product', _Seq_feat_product), (u'location', _Seq_feat_location), (u'qual', _Seq_feat_qual), (u'title', _Seq_feat_title), (u'ext', _Seq_feat_ext), (u'cit', _Seq_feat_cit), (u'exp-ev', _Seq_feat_exp_ev), (u'xref', _Seq_feat_xref), (u'dbxref', _Seq_feat_dbxref), (u'pseudo', _Seq_feat_pseudo), (u'except-text', _Seq_feat_except_text), (u'ids', _Seq_feat_ids), (u'exts', _Seq_feat_exts), (u'support', _Seq_feat_support), ]) Seq_feat._ext = None #-----< SeqFeatData >-----# SeqFeatData = CHOICE(name=u'SeqFeatData', mode=MODE_TYPE) _SeqFeatData_gene = SEQ(name=u'gene', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Gene', 'Gene-ref'))) _SeqFeatData_org = SEQ(name=u'org', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'Org-ref'))) _SeqFeatData_cdregion = SEQ(name=u'cdregion', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Cdregion'))) _SeqFeatData_prot = SEQ(name=u'prot', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Protein', 'Prot-ref'))) _SeqFeatData_rna = SEQ(name=u'rna', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-RNA', 'RNA-ref'))) _SeqFeatData_pub = SEQ(name=u'pub', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Pubdesc'))) _SeqFeatData_seq = CHOICE(name=u'seq', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _SeqFeatData_imp = SEQ(name=u'imp', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Imp-feat'))) _SeqFeatData_region = STR_VIS(name=u'region', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqFeatData_comment = NULL(name=u'comment', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqFeatData_bond = ENUM(name=u'bond', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqFeatData_bond._cont = ASN1Dict([(u'disulfide', 1), (u'thiolester', 2), (u'xlink', 3), (u'thioether', 4), (u'other', 255)]) _SeqFeatData_bond._ext = None _SeqFeatData_site = ENUM(name=u'site', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqFeatData_site._cont = ASN1Dict([(u'active', 1), (u'binding', 2), (u'cleavage', 3), (u'inhibit', 4), (u'modified', 5), (u'glycosylation', 6), (u'myristoylation', 7), (u'mutagenized', 8), (u'metal-binding', 9), (u'phosphorylation', 10), (u'acetylation', 11), (u'amidation', 12), (u'methylation', 13), (u'hydroxylation', 14), (u'sulfatation', 15), (u'oxidative-deamination', 16), (u'pyrrolidone-carboxylic-acid', 17), (u'gamma-carboxyglutamic-acid', 18), (u'blocked', 19), (u'lipid-binding', 20), (u'np-binding', 21), (u'dna-binding', 22), (u'signal-peptide', 23), (u'transit-peptide', 24), (u'transmembrane-region', 25), (u'nitrosylation', 26), (u'other', 255)]) _SeqFeatData_site._ext = None _SeqFeatData_rsite = CHOICE(name=u'rsite', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Rsite', 'Rsite-ref'))) _SeqFeatData_user = SEQ(name=u'user', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object'))) _SeqFeatData_txinit = SEQ(name=u'txinit', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-TxInit', 'Txinit'))) _SeqFeatData_num = CHOICE(name=u'num', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Numbering'))) _SeqFeatData_psec_str = ENUM(name=u'psec-str', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqFeatData_psec_str._cont = ASN1Dict([(u'helix', 1), (u'sheet', 2), (u'turn', 3)]) _SeqFeatData_psec_str._ext = None _SeqFeatData_non_std_residue = STR_VIS(name=u'non-std-residue', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqFeatData_het = STR_VIS(name=u'het', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Heterogen'))) _SeqFeatData_biosrc = SEQ(name=u'biosrc', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'BioSource'))) _SeqFeatData_clone = SEQ(name=u'clone', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Clone-ref'))) _SeqFeatData_variation = SEQ(name=u'variation', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Variation', 'Variation-ref'))) SeqFeatData._cont = ASN1Dict([ (u'gene', _SeqFeatData_gene), (u'org', _SeqFeatData_org), (u'cdregion', _SeqFeatData_cdregion), (u'prot', _SeqFeatData_prot), (u'rna', _SeqFeatData_rna), (u'pub', _SeqFeatData_pub), (u'seq', _SeqFeatData_seq), (u'imp', _SeqFeatData_imp), (u'region', _SeqFeatData_region), (u'comment', _SeqFeatData_comment), (u'bond', _SeqFeatData_bond), (u'site', _SeqFeatData_site), (u'rsite', _SeqFeatData_rsite), (u'user', _SeqFeatData_user), (u'txinit', _SeqFeatData_txinit), (u'num', _SeqFeatData_num), (u'psec-str', _SeqFeatData_psec_str), (u'non-std-residue', _SeqFeatData_non_std_residue), (u'het', _SeqFeatData_het), (u'biosrc', _SeqFeatData_biosrc), (u'clone', _SeqFeatData_clone), (u'variation', _SeqFeatData_variation), ]) SeqFeatData._ext = None #-----< SeqFeatXref >-----# SeqFeatXref = SEQ(name=u'SeqFeatXref', mode=MODE_TYPE) _SeqFeatXref_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Feat-id')), opt=True) _SeqFeatXref_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'SeqFeatData')), opt=True) SeqFeatXref._cont = ASN1Dict([ (u'id', _SeqFeatXref_id), (u'data', _SeqFeatXref_data), ]) SeqFeatXref._ext = None #-----< SeqFeatSupport >-----# SeqFeatSupport = SEQ(name=u'SeqFeatSupport', mode=MODE_TYPE) _SeqFeatSupport_experiment = SET_OF(name=u'experiment', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SeqFeatSupport_experiment__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'ExperimentSupport'))) _SeqFeatSupport_experiment._cont = __SeqFeatSupport_experiment__item_ _SeqFeatSupport_inference = SET_OF(name=u'inference', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SeqFeatSupport_inference__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'InferenceSupport'))) _SeqFeatSupport_inference._cont = __SeqFeatSupport_inference__item_ _SeqFeatSupport_model_evidence = SET_OF(name=u'model-evidence', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __SeqFeatSupport_model_evidence__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'ModelEvidenceSupport'))) _SeqFeatSupport_model_evidence._cont = __SeqFeatSupport_model_evidence__item_ SeqFeatSupport._cont = ASN1Dict([ (u'experiment', _SeqFeatSupport_experiment), (u'inference', _SeqFeatSupport_inference), (u'model-evidence', _SeqFeatSupport_model_evidence), ]) SeqFeatSupport._ext = None #-----< EvidenceCategory >-----# EvidenceCategory = INT(name=u'EvidenceCategory', mode=MODE_TYPE) EvidenceCategory._cont = ASN1Dict([(u'not-set', 0), (u'coordinates', 1), (u'description', 2), (u'existence', 3)]) #-----< ExperimentSupport >-----# ExperimentSupport = SEQ(name=u'ExperimentSupport', mode=MODE_TYPE) _ExperimentSupport_category = INT(name=u'category', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'EvidenceCategory')), opt=True) _ExperimentSupport_explanation = STR_VIS(name=u'explanation', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ExperimentSupport_pmids = SET_OF(name=u'pmids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExperimentSupport_pmids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _ExperimentSupport_pmids._cont = __ExperimentSupport_pmids__item_ _ExperimentSupport_dois = SET_OF(name=u'dois', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ExperimentSupport_dois__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'DOI'))) _ExperimentSupport_dois._cont = __ExperimentSupport_dois__item_ ExperimentSupport._cont = ASN1Dict([ (u'category', _ExperimentSupport_category), (u'explanation', _ExperimentSupport_explanation), (u'pmids', _ExperimentSupport_pmids), (u'dois', _ExperimentSupport_dois), ]) ExperimentSupport._ext = None #-----< Program-id >-----# Program_id = SEQ(name=u'Program-id', mode=MODE_TYPE) _Program_id_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Program_id_version = STR_VIS(name=u'version', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Program_id._cont = ASN1Dict([ (u'name', _Program_id_name), (u'version', _Program_id_version), ]) Program_id._ext = None #-----< EvidenceBasis >-----# EvidenceBasis = SEQ(name=u'EvidenceBasis', mode=MODE_TYPE) _EvidenceBasis_programs = SET_OF(name=u'programs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __EvidenceBasis_programs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Program-id'))) _EvidenceBasis_programs._cont = __EvidenceBasis_programs__item_ _EvidenceBasis_accessions = SET_OF(name=u'accessions', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __EvidenceBasis_accessions__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _EvidenceBasis_accessions._cont = __EvidenceBasis_accessions__item_ EvidenceBasis._cont = ASN1Dict([ (u'programs', _EvidenceBasis_programs), (u'accessions', _EvidenceBasis_accessions), ]) EvidenceBasis._ext = None #-----< InferenceSupport >-----# InferenceSupport = SEQ(name=u'InferenceSupport', mode=MODE_TYPE) _InferenceSupport_category = INT(name=u'category', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'EvidenceCategory')), opt=True) _InferenceSupport_type = INT(name=u'type', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _InferenceSupport_type._cont = ASN1Dict([(u'not-set', 0), (u'similar-to-sequence', 1), (u'similar-to-aa', 2), (u'similar-to-dna', 3), (u'similar-to-rna', 4), (u'similar-to-mrna', 5), (u'similiar-to-est', 6), (u'similar-to-other-rna', 7), (u'profile', 8), (u'nucleotide-motif', 9), (u'protein-motif', 10), (u'ab-initio-prediction', 11), (u'alignment', 12), (u'other', 255)]) _InferenceSupport_other_type = STR_VIS(name=u'other-type', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _InferenceSupport_same_species = BOOL(name=u'same-species', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _InferenceSupport_basis = SEQ(name=u'basis', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'EvidenceBasis'))) _InferenceSupport_pmids = SET_OF(name=u'pmids', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __InferenceSupport_pmids__item_ = INT(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'PubMedId'))) _InferenceSupport_pmids._cont = __InferenceSupport_pmids__item_ _InferenceSupport_dois = SET_OF(name=u'dois', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __InferenceSupport_dois__item_ = STR_VIS(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Biblio', 'DOI'))) _InferenceSupport_dois._cont = __InferenceSupport_dois__item_ InferenceSupport._cont = ASN1Dict([ (u'category', _InferenceSupport_category), (u'type', _InferenceSupport_type), (u'other-type', _InferenceSupport_other_type), (u'same-species', _InferenceSupport_same_species), (u'basis', _InferenceSupport_basis), (u'pmids', _InferenceSupport_pmids), (u'dois', _InferenceSupport_dois), ]) InferenceSupport._ext = None #-----< ModelEvidenceItem >-----# ModelEvidenceItem = SEQ(name=u'ModelEvidenceItem', mode=MODE_TYPE) _ModelEvidenceItem_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ModelEvidenceItem_exon_count = INT(name=u'exon-count', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ModelEvidenceItem_exon_length = INT(name=u'exon-length', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ModelEvidenceItem_full_length = BOOL(name=u'full-length', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _ModelEvidenceItem_supports_all_exon_combo = BOOL(name=u'supports-all-exon-combo', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) ModelEvidenceItem._cont = ASN1Dict([ (u'id', _ModelEvidenceItem_id), (u'exon-count', _ModelEvidenceItem_exon_count), (u'exon-length', _ModelEvidenceItem_exon_length), (u'full-length', _ModelEvidenceItem_full_length), (u'supports-all-exon-combo', _ModelEvidenceItem_supports_all_exon_combo), ]) ModelEvidenceItem._ext = None #-----< ModelEvidenceSupport >-----# ModelEvidenceSupport = SEQ(name=u'ModelEvidenceSupport', mode=MODE_TYPE) _ModelEvidenceSupport_method = STR_VIS(name=u'method', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ModelEvidenceSupport_mrna = SET_OF(name=u'mrna', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ModelEvidenceSupport_mrna__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'ModelEvidenceItem'))) _ModelEvidenceSupport_mrna._cont = __ModelEvidenceSupport_mrna__item_ _ModelEvidenceSupport_est = SET_OF(name=u'est', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ModelEvidenceSupport_est__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'ModelEvidenceItem'))) _ModelEvidenceSupport_est._cont = __ModelEvidenceSupport_est__item_ _ModelEvidenceSupport_protein = SET_OF(name=u'protein', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ModelEvidenceSupport_protein__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'ModelEvidenceItem'))) _ModelEvidenceSupport_protein._cont = __ModelEvidenceSupport_protein__item_ _ModelEvidenceSupport_identification = CHOICE(name=u'identification', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id')), opt=True) _ModelEvidenceSupport_dbxref = SET_OF(name=u'dbxref', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ModelEvidenceSupport_dbxref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _ModelEvidenceSupport_dbxref._cont = __ModelEvidenceSupport_dbxref__item_ _ModelEvidenceSupport_exon_count = INT(name=u'exon-count', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ModelEvidenceSupport_exon_length = INT(name=u'exon-length', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ModelEvidenceSupport_full_length = BOOL(name=u'full-length', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _ModelEvidenceSupport_supports_all_exon_combo = BOOL(name=u'supports-all-exon-combo', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) ModelEvidenceSupport._cont = ASN1Dict([ (u'method', _ModelEvidenceSupport_method), (u'mrna', _ModelEvidenceSupport_mrna), (u'est', _ModelEvidenceSupport_est), (u'protein', _ModelEvidenceSupport_protein), (u'identification', _ModelEvidenceSupport_identification), (u'dbxref', _ModelEvidenceSupport_dbxref), (u'exon-count', _ModelEvidenceSupport_exon_count), (u'exon-length', _ModelEvidenceSupport_exon_length), (u'full-length', _ModelEvidenceSupport_full_length), (u'supports-all-exon-combo', _ModelEvidenceSupport_supports_all_exon_combo), ]) ModelEvidenceSupport._ext = None #-----< Cdregion >-----# Cdregion = SEQ(name=u'Cdregion', mode=MODE_TYPE) _Cdregion_orf = BOOL(name=u'orf', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdregion_frame = ENUM(name=u'frame', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'not-set') _Cdregion_frame._cont = ASN1Dict([(u'not-set', 0), (u'one', 1), (u'two', 2), (u'three', 3)]) _Cdregion_frame._ext = None _Cdregion_conflict = BOOL(name=u'conflict', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdregion_gaps = INT(name=u'gaps', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdregion_mismatch = INT(name=u'mismatch', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Cdregion_code = SET_OF(name=u'code', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Genetic-code')), opt=True) _Cdregion_code_break = SEQ_OF(name=u'code-break', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Cdregion_code_break__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Code-break'))) _Cdregion_code_break._cont = __Cdregion_code_break__item_ _Cdregion_stops = INT(name=u'stops', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Cdregion._cont = ASN1Dict([ (u'orf', _Cdregion_orf), (u'frame', _Cdregion_frame), (u'conflict', _Cdregion_conflict), (u'gaps', _Cdregion_gaps), (u'mismatch', _Cdregion_mismatch), (u'code', _Cdregion_code), (u'code-break', _Cdregion_code_break), (u'stops', _Cdregion_stops), ]) Cdregion._ext = None #-----< Genetic-code >-----# Genetic_code = SET_OF(name=u'Genetic-code', mode=MODE_TYPE) _Genetic_code__item_ = CHOICE(name='_item_', mode=MODE_TYPE) __Genetic_code__item__name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__id = INT(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__ncbieaa = STR_VIS(name=u'ncbieaa', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__ncbi8aa = OCT_STR(name=u'ncbi8aa', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__ncbistdaa = OCT_STR(name=u'ncbistdaa', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__sncbieaa = STR_VIS(name=u'sncbieaa', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__sncbi8aa = OCT_STR(name=u'sncbi8aa', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Genetic_code__item__sncbistdaa = OCT_STR(name=u'sncbistdaa', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Genetic_code__item_._cont = ASN1Dict([ (u'name', __Genetic_code__item__name), (u'id', __Genetic_code__item__id), (u'ncbieaa', __Genetic_code__item__ncbieaa), (u'ncbi8aa', __Genetic_code__item__ncbi8aa), (u'ncbistdaa', __Genetic_code__item__ncbistdaa), (u'sncbieaa', __Genetic_code__item__sncbieaa), (u'sncbi8aa', __Genetic_code__item__sncbi8aa), (u'sncbistdaa', __Genetic_code__item__sncbistdaa), ]) _Genetic_code__item_._ext = None Genetic_code._cont = _Genetic_code__item_ #-----< Code-break >-----# Code_break = SEQ(name=u'Code-break', mode=MODE_TYPE) _Code_break_loc = CHOICE(name=u'loc', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Code_break_aa = CHOICE(name=u'aa', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Code_break_aa_ncbieaa = INT(name=u'ncbieaa', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Code_break_aa_ncbi8aa = INT(name=u'ncbi8aa', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Code_break_aa_ncbistdaa = INT(name=u'ncbistdaa', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Code_break_aa._cont = ASN1Dict([ (u'ncbieaa', __Code_break_aa_ncbieaa), (u'ncbi8aa', __Code_break_aa_ncbi8aa), (u'ncbistdaa', __Code_break_aa_ncbistdaa), ]) _Code_break_aa._ext = None Code_break._cont = ASN1Dict([ (u'loc', _Code_break_loc), (u'aa', _Code_break_aa), ]) Code_break._ext = None #-----< Genetic-code-table >-----# Genetic_code_table = SET_OF(name=u'Genetic-code-table', mode=MODE_TYPE) _Genetic_code_table__item_ = SET_OF(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Genetic-code'))) Genetic_code_table._cont = _Genetic_code_table__item_ #-----< Imp-feat >-----# Imp_feat = SEQ(name=u'Imp-feat', mode=MODE_TYPE) _Imp_feat_key = STR_VIS(name=u'key', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Imp_feat_loc = STR_VIS(name=u'loc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Imp_feat_descr = STR_VIS(name=u'descr', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Imp_feat._cont = ASN1Dict([ (u'key', _Imp_feat_key), (u'loc', _Imp_feat_loc), (u'descr', _Imp_feat_descr), ]) Imp_feat._ext = None #-----< Gb-qual >-----# Gb_qual = SEQ(name=u'Gb-qual', mode=MODE_TYPE) _Gb_qual_qual = STR_VIS(name=u'qual', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Gb_qual_val = STR_VIS(name=u'val', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Gb_qual._cont = ASN1Dict([ (u'qual', _Gb_qual_qual), (u'val', _Gb_qual_val), ]) Gb_qual._ext = None #-----< Clone-ref >-----# Clone_ref = SEQ(name=u'Clone-ref', mode=MODE_TYPE) _Clone_ref_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Clone_ref_library = STR_VIS(name=u'library', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Clone_ref_concordant = BOOL(name=u'concordant', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Clone_ref_unique = BOOL(name=u'unique', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Clone_ref_placement_method = INT(name=u'placement-method', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Clone_ref_placement_method._cont = ASN1Dict([(u'end-seq', 0), (u'insert-alignment', 1), (u'sts', 2), (u'fish', 3), (u'fingerprint', 4), (u'end-seq-insert-alignment', 5), (u'external', 253), (u'curated', 254), (u'other', 255)]) _Clone_ref_clone_seq = SET_OF(name=u'clone-seq', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Clone-seq-set')), opt=True) Clone_ref._cont = ASN1Dict([ (u'name', _Clone_ref_name), (u'library', _Clone_ref_library), (u'concordant', _Clone_ref_concordant), (u'unique', _Clone_ref_unique), (u'placement-method', _Clone_ref_placement_method), (u'clone-seq', _Clone_ref_clone_seq), ]) Clone_ref._ext = None #-----< Clone-seq-set >-----# Clone_seq_set = SET_OF(name=u'Clone-seq-set', mode=MODE_TYPE) _Clone_seq_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqfeat', 'Clone-seq'))) Clone_seq_set._cont = _Clone_seq_set__item_ #-----< Clone-seq >-----# Clone_seq = SEQ(name=u'Clone-seq', mode=MODE_TYPE) _Clone_seq_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Clone_seq_type._cont = ASN1Dict([(u'insert', 0), (u'end', 1), (u'other', 255)]) _Clone_seq_confidence = INT(name=u'confidence', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Clone_seq_confidence._cont = ASN1Dict([(u'multiple', 0), (u'na', 1), (u'nohit-rep', 2), (u'nohitnorep', 3), (u'other-chrm', 4), (u'unique', 5), (u'virtual', 6), (u'multiple-rep', 7), (u'multiplenorep', 8), (u'no-hit', 9), (u'other', 255)]) _Clone_seq_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Clone_seq_seq = CHOICE(name=u'seq', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) _Clone_seq_align_id = SEQ(name=u'align-id', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag')), opt=True) _Clone_seq_support = INT(name=u'support', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Clone_seq_support._cont = ASN1Dict([(u'prototype', 0), (u'supporting', 1), (u'supports-other', 2), (u'non-supporting', 3)]) Clone_seq._cont = ASN1Dict([ (u'type', _Clone_seq_type), (u'confidence', _Clone_seq_confidence), (u'location', _Clone_seq_location), (u'seq', _Clone_seq_seq), (u'align-id', _Clone_seq_align_id), (u'support', _Clone_seq_support), ]) Clone_seq._ext = None _all_ = [ _Feat_id_gibb, _Feat_id_giim, _Feat_id_local, _Feat_id_general, Feat_id, _Seq_feat_id, _Seq_feat_data, _Seq_feat_partial, _Seq_feat_except_, _Seq_feat_comment, _Seq_feat_product, _Seq_feat_location, __Seq_feat_qual__item_, _Seq_feat_qual, _Seq_feat_title, _Seq_feat_ext, _Seq_feat_cit, _Seq_feat_exp_ev, __Seq_feat_xref__item_, _Seq_feat_xref, __Seq_feat_dbxref__item_, _Seq_feat_dbxref, _Seq_feat_pseudo, _Seq_feat_except_text, __Seq_feat_ids__item_, _Seq_feat_ids, __Seq_feat_exts__item_, _Seq_feat_exts, _Seq_feat_support, Seq_feat, _SeqFeatData_gene, _SeqFeatData_org, _SeqFeatData_cdregion, _SeqFeatData_prot, _SeqFeatData_rna, _SeqFeatData_pub, _SeqFeatData_seq, _SeqFeatData_imp, _SeqFeatData_region, _SeqFeatData_comment, _SeqFeatData_bond, _SeqFeatData_site, _SeqFeatData_rsite, _SeqFeatData_user, _SeqFeatData_txinit, _SeqFeatData_num, _SeqFeatData_psec_str, _SeqFeatData_non_std_residue, _SeqFeatData_het, _SeqFeatData_biosrc, _SeqFeatData_clone, _SeqFeatData_variation, SeqFeatData, _SeqFeatXref_id, _SeqFeatXref_data, SeqFeatXref, __SeqFeatSupport_experiment__item_, _SeqFeatSupport_experiment, __SeqFeatSupport_inference__item_, _SeqFeatSupport_inference, __SeqFeatSupport_model_evidence__item_, _SeqFeatSupport_model_evidence, SeqFeatSupport, EvidenceCategory, _ExperimentSupport_category, _ExperimentSupport_explanation, __ExperimentSupport_pmids__item_, _ExperimentSupport_pmids, __ExperimentSupport_dois__item_, _ExperimentSupport_dois, ExperimentSupport, _Program_id_name, _Program_id_version, Program_id, __EvidenceBasis_programs__item_, _EvidenceBasis_programs, __EvidenceBasis_accessions__item_, _EvidenceBasis_accessions, EvidenceBasis, _InferenceSupport_category, _InferenceSupport_type, _InferenceSupport_other_type, _InferenceSupport_same_species, _InferenceSupport_basis, __InferenceSupport_pmids__item_, _InferenceSupport_pmids, __InferenceSupport_dois__item_, _InferenceSupport_dois, InferenceSupport, _ModelEvidenceItem_id, _ModelEvidenceItem_exon_count, _ModelEvidenceItem_exon_length, _ModelEvidenceItem_full_length, _ModelEvidenceItem_supports_all_exon_combo, ModelEvidenceItem, _ModelEvidenceSupport_method, __ModelEvidenceSupport_mrna__item_, _ModelEvidenceSupport_mrna, __ModelEvidenceSupport_est__item_, _ModelEvidenceSupport_est, __ModelEvidenceSupport_protein__item_, _ModelEvidenceSupport_protein, _ModelEvidenceSupport_identification, __ModelEvidenceSupport_dbxref__item_, _ModelEvidenceSupport_dbxref, _ModelEvidenceSupport_exon_count, _ModelEvidenceSupport_exon_length, _ModelEvidenceSupport_full_length, _ModelEvidenceSupport_supports_all_exon_combo, ModelEvidenceSupport, _Cdregion_orf, _Cdregion_frame, _Cdregion_conflict, _Cdregion_gaps, _Cdregion_mismatch, _Cdregion_code, __Cdregion_code_break__item_, _Cdregion_code_break, _Cdregion_stops, Cdregion, __Genetic_code__item__name, __Genetic_code__item__id, __Genetic_code__item__ncbieaa, __Genetic_code__item__ncbi8aa, __Genetic_code__item__ncbistdaa, __Genetic_code__item__sncbieaa, __Genetic_code__item__sncbi8aa, __Genetic_code__item__sncbistdaa, _Genetic_code__item_, Genetic_code, _Code_break_loc, __Code_break_aa_ncbieaa, __Code_break_aa_ncbi8aa, __Code_break_aa_ncbistdaa, _Code_break_aa, Code_break, _Genetic_code_table__item_, Genetic_code_table, _Imp_feat_key, _Imp_feat_loc, _Imp_feat_descr, Imp_feat, _Gb_qual_qual, _Gb_qual_val, Gb_qual, _Clone_ref_name, _Clone_ref_library, _Clone_ref_concordant, _Clone_ref_unique, _Clone_ref_placement_method, _Clone_ref_clone_seq, Clone_ref, _Clone_seq_set__item_, Clone_seq_set, _Clone_seq_type, _Clone_seq_confidence, _Clone_seq_location, _Clone_seq_seq, _Clone_seq_align_id, _Clone_seq_support, Clone_seq, ] class NCBI_Variation: _name_ = u'NCBI-Variation' _oid_ = [] _obj_ = [ u'VariantProperties', u'Phenotype', u'Population-data', u'Ext-loc', u'Variation-ref', u'Delta-item', u'Variation-inst', ] _type_ = [ u'VariantProperties', u'Phenotype', u'Population-data', u'Ext-loc', u'Variation-ref', u'Delta-item', u'Variation-inst', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< VariantProperties >-----# VariantProperties = SEQ(name=u'VariantProperties', mode=MODE_TYPE) _VariantProperties_version = INT(name=u'version', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _VariantProperties_resource_link = INT(name=u'resource-link', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_resource_link._cont = ASN1Dict([(u'preserved', 1), (u'provisional', 2), (u'has3D', 4), (u'submitterLinkout', 8), (u'clinical', 16), (u'genotypeKit', 32)]) _VariantProperties_gene_location = INT(name=u'gene-location', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_gene_location._cont = ASN1Dict([(u'in-gene', 1), (u'near-gene-5', 2), (u'near-gene-3', 4), (u'intron', 8), (u'donor', 16), (u'acceptor', 32), (u'utr-5', 64), (u'utr-3', 128), (u'in-start-codon', 256), (u'in-stop-codon', 512), (u'intergenic', 1024), (u'conserved-noncoding', 2048)]) _VariantProperties_effect = INT(name=u'effect', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_effect._cont = ASN1Dict([(u'no-change', 0), (u'synonymous', 1), (u'nonsense', 2), (u'missense', 4), (u'frameshift', 8), (u'up-regulator', 16), (u'down-regulator', 32), (u'methylation', 64), (u'stop-gain', 128), (u'stop-loss', 256)]) _VariantProperties_mapping = INT(name=u'mapping', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_mapping._cont = ASN1Dict([(u'has-other-snp', 1), (u'has-assembly-conflict', 2), (u'is-assembly-specific', 4)]) _VariantProperties_map_weight = INT(name=u'map-weight', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_map_weight._cont = ASN1Dict([(u'is-uniquely-placed', 1), (u'placed-twice-on-same-chrom', 2), (u'placed-twice-on-diff-chrom', 3), (u'many-placements', 10)]) _VariantProperties_frequency_based_validation = INT(name=u'frequency-based-validation', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_frequency_based_validation._cont = ASN1Dict([(u'is-mutation', 1), (u'above-5pct-all', 2), (u'above-5pct-1plus', 4), (u'validated', 8), (u'above-1pct-all', 16), (u'above-1pct-1plus', 32)]) _VariantProperties_genotype = INT(name=u'genotype', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_genotype._cont = ASN1Dict([(u'in-haplotype-set', 1), (u'has-genotypes', 2)]) _VariantProperties_project_data = SET_OF(name=u'project-data', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __VariantProperties_project_data__item_ = INT(name='_item_', mode=MODE_TYPE) _VariantProperties_project_data._cont = __VariantProperties_project_data__item_ _VariantProperties_quality_check = INT(name=u'quality-check', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_quality_check._cont = ASN1Dict([(u'contig-allele-missing', 1), (u'withdrawn-by-submitter', 2), (u'non-overlapping-alleles', 4), (u'strain-specific', 8), (u'genotype-conflict', 16)]) _VariantProperties_confidence = INT(name=u'confidence', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_confidence._cont = ASN1Dict([(u'unknown', 0), (u'likely-artifact', 1), (u'other', 255)]) _VariantProperties_other_validation = BOOL(name=u'other-validation', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_allele_origin = INT(name=u'allele-origin', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_allele_origin._cont = ASN1Dict([(u'unknown', 0), (u'germline', 1), (u'somatic', 2), (u'inherited', 4), (u'paternal', 8), (u'maternal', 16), (u'de-novo', 32), (u'biparental', 64), (u'uniparental', 128), (u'not-tested', 256), (u'tested-inconclusive', 512), (u'not-reported', 1024), (u'other', 1073741824)]) _VariantProperties_allele_state = INT(name=u'allele-state', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _VariantProperties_allele_state._cont = ASN1Dict([(u'unknown', 0), (u'homozygous', 1), (u'heterozygous', 2), (u'hemizygous', 3), (u'nullizygous', 4), (u'other', 255)]) _VariantProperties_allele_frequency = REAL(name=u'allele-frequency', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _VariantProperties_is_ancestral_allele = BOOL(name=u'is-ancestral-allele', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) VariantProperties._cont = ASN1Dict([ (u'version', _VariantProperties_version), (u'resource-link', _VariantProperties_resource_link), (u'gene-location', _VariantProperties_gene_location), (u'effect', _VariantProperties_effect), (u'mapping', _VariantProperties_mapping), (u'map-weight', _VariantProperties_map_weight), (u'frequency-based-validation', _VariantProperties_frequency_based_validation), (u'genotype', _VariantProperties_genotype), (u'project-data', _VariantProperties_project_data), (u'quality-check', _VariantProperties_quality_check), (u'confidence', _VariantProperties_confidence), (u'other-validation', _VariantProperties_other_validation), (u'allele-origin', _VariantProperties_allele_origin), (u'allele-state', _VariantProperties_allele_state), (u'allele-frequency', _VariantProperties_allele_frequency), (u'is-ancestral-allele', _VariantProperties_is_ancestral_allele), ]) VariantProperties._ext = None #-----< Phenotype >-----# Phenotype = SEQ(name=u'Phenotype', mode=MODE_TYPE) _Phenotype_source = STR_VIS(name=u'source', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Phenotype_term = STR_VIS(name=u'term', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Phenotype_xref = SET_OF(name=u'xref', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Phenotype_xref__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Phenotype_xref._cont = __Phenotype_xref__item_ _Phenotype_clinical_significance = INT(name=u'clinical-significance', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Phenotype_clinical_significance._cont = ASN1Dict([(u'unknown', 0), (u'untested', 1), (u'non-pathogenic', 2), (u'probable-non-pathogenic', 3), (u'probable-pathogenic', 4), (u'pathogenic', 5), (u'drug-response', 6), (u'histocompatibility', 7), (u'other', 255)]) Phenotype._cont = ASN1Dict([ (u'source', _Phenotype_source), (u'term', _Phenotype_term), (u'xref', _Phenotype_xref), (u'clinical-significance', _Phenotype_clinical_significance), ]) Phenotype._ext = None #-----< Population-data >-----# Population_data = SEQ(name=u'Population-data', mode=MODE_TYPE) _Population_data_population = STR_VIS(name=u'population', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Population_data_genotype_frequency = REAL(name=u'genotype-frequency', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Population_data_chromosomes_tested = INT(name=u'chromosomes-tested', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Population_data_sample_ids = SET_OF(name=u'sample-ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Population_data_sample_ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _Population_data_sample_ids._cont = __Population_data_sample_ids__item_ _Population_data_allele_frequency = REAL(name=u'allele-frequency', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Population_data_flags = INT(name=u'flags', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Population_data_flags._cont = ASN1Dict([(u'is-default-population', 1), (u'is-minor-allele', 2), (u'is-rare-allele', 4)]) Population_data._cont = ASN1Dict([ (u'population', _Population_data_population), (u'genotype-frequency', _Population_data_genotype_frequency), (u'chromosomes-tested', _Population_data_chromosomes_tested), (u'sample-ids', _Population_data_sample_ids), (u'allele-frequency', _Population_data_allele_frequency), (u'flags', _Population_data_flags), ]) Population_data._ext = None #-----< Ext-loc >-----# Ext_loc = SEQ(name=u'Ext-loc', mode=MODE_TYPE) _Ext_loc_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _Ext_loc_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) Ext_loc._cont = ASN1Dict([ (u'id', _Ext_loc_id), (u'location', _Ext_loc_location), ]) Ext_loc._ext = None #-----< Variation-ref >-----# Variation_ref = SEQ(name=u'Variation-ref', mode=MODE_TYPE) _Variation_ref_id = SEQ(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag')), opt=True) _Variation_ref_parent_id = SEQ(name=u'parent-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag')), opt=True) _Variation_ref_sample_id = CHOICE(name=u'sample-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id')), opt=True) _Variation_ref_other_ids = SET_OF(name=u'other-ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_other_ids__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Variation_ref_other_ids._cont = __Variation_ref_other_ids__item_ _Variation_ref_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_ref_synonyms = SET_OF(name=u'synonyms', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_synonyms__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Variation_ref_synonyms._cont = __Variation_ref_synonyms__item_ _Variation_ref_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_ref_phenotype = SET_OF(name=u'phenotype', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_phenotype__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Variation', 'Phenotype'))) _Variation_ref_phenotype._cont = __Variation_ref_phenotype__item_ _Variation_ref_method = SET_OF(name=u'method', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_method__item_ = INT(name='_item_', mode=MODE_TYPE) __Variation_ref_method__item_._cont = ASN1Dict([(u'unknown', 0), (u'bac-acgh', 1), (u'computational', 2), (u'curated', 3), (u'digital-array', 4), (u'expression-array', 5), (u'fish', 6), (u'flanking-sequence', 7), (u'maph', 8), (u'mcd-analysis', 9), (u'mlpa', 10), (u'oea-assembly', 11), (u'oligo-acgh', 12), (u'paired-end', 13), (u'pcr', 14), (u'qpcr', 15), (u'read-depth', 16), (u'roma', 17), (u'rt-pcr', 18), (u'sage', 19), (u'sequence-alignment', 20), (u'sequencing', 21), (u'snp-array', 22), (u'snp-genoytyping', 23), (u'southern', 24), (u'western', 25), (u'optical-mapping', 26), (u'other', 255)]) _Variation_ref_method._cont = __Variation_ref_method__item_ _Variation_ref_population_data = SET_OF(name=u'population-data', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_population_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Variation', 'Population-data'))) _Variation_ref_population_data._cont = __Variation_ref_population_data__item_ _Variation_ref_variant_prop = SEQ(name=u'variant-prop', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Variation', 'VariantProperties')), opt=True) _Variation_ref_validated = BOOL(name=u'validated', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_ref_clinical_test = SET_OF(name=u'clinical-test', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_clinical_test__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Variation_ref_clinical_test._cont = __Variation_ref_clinical_test__item_ _Variation_ref_allele_origin = INT(name=u'allele-origin', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_ref_allele_origin._cont = ASN1Dict([(u'unknown', 0), (u'germline', 1), (u'somatic', 2), (u'inherited', 4), (u'paternal', 8), (u'maternal', 16), (u'de-novo', 32), (u'biparental', 64), (u'uniparental', 128), (u'not-tested', 256), (u'tested-inconclusive', 512), (u'other', 1073741824)]) _Variation_ref_allele_state = INT(name=u'allele-state', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_ref_allele_state._cont = ASN1Dict([(u'unknown', 0), (u'homozygous', 1), (u'heterozygous', 2), (u'hemizygous', 3), (u'nullizygous', 4), (u'other', 255)]) _Variation_ref_allele_frequency = REAL(name=u'allele-frequency', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Variation_ref_is_ancestral_allele = BOOL(name=u'is-ancestral-allele', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_ref_pub = CHOICE(name=u'pub', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Pub', 'Pub')), opt=True) _Variation_ref_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Variation_ref_data_unknown = NULL(name=u'unknown', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Variation_ref_data_note = STR_VIS(name=u'note', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Variation_ref_data_uniparental_disomy = NULL(name=u'uniparental-disomy', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Variation_ref_data_instance = SEQ(name=u'instance', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Variation', 'Variation-inst'))) __Variation_ref_data_set = SEQ(name=u'set', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Variation_ref_data_set_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Variation_ref_data_set_type._cont = ASN1Dict([(u'unknown', 0), (u'compound', 1), (u'products', 2), (u'haplotype', 3), (u'genotype', 4), (u'mosaic', 5), (u'individual', 6), (u'population', 7), (u'alleles', 8), (u'package', 9), (u'other', 255)]) ___Variation_ref_data_set_variations = SET_OF(name=u'variations', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Variation_ref_data_set_variations__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Variation', 'Variation-ref'))) ___Variation_ref_data_set_variations._cont = ____Variation_ref_data_set_variations__item_ ___Variation_ref_data_set_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_data_set._cont = ASN1Dict([ (u'type', ___Variation_ref_data_set_type), (u'variations', ___Variation_ref_data_set_variations), (u'name', ___Variation_ref_data_set_name), ]) __Variation_ref_data_set._ext = None __Variation_ref_data_complex = NULL(name=u'complex', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Variation_ref_data._cont = ASN1Dict([ (u'unknown', __Variation_ref_data_unknown), (u'note', __Variation_ref_data_note), (u'uniparental-disomy', __Variation_ref_data_uniparental_disomy), (u'instance', __Variation_ref_data_instance), (u'set', __Variation_ref_data_set), (u'complex', __Variation_ref_data_complex), ]) _Variation_ref_data._ext = None _Variation_ref_consequence = SET_OF(name=u'consequence', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_consequence__item_ = CHOICE(name='_item_', mode=MODE_TYPE) ___Variation_ref_consequence__item__unknown = NULL(name=u'unknown', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Variation_ref_consequence__item__splicing = NULL(name=u'splicing', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Variation_ref_consequence__item__note = STR_VIS(name=u'note', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Variation_ref_consequence__item__variation = SEQ(name=u'variation', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Variation', 'Variation-ref'))) ___Variation_ref_consequence__item__frameshift = SEQ(name=u'frameshift', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Variation_ref_consequence__item__frameshift_phase = INT(name=u'phase', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Variation_ref_consequence__item__frameshift_x_length = INT(name=u'x-length', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Variation_ref_consequence__item__frameshift._cont = ASN1Dict([ (u'phase', ____Variation_ref_consequence__item__frameshift_phase), (u'x-length', ____Variation_ref_consequence__item__frameshift_x_length), ]) ___Variation_ref_consequence__item__frameshift._ext = None ___Variation_ref_consequence__item__loss_of_heterozygosity = SEQ(name=u'loss-of-heterozygosity', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ____Variation_ref_consequence__item__loss_of_heterozygosity_reference = STR_VIS(name=u'reference', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Variation_ref_consequence__item__loss_of_heterozygosity_test = STR_VIS(name=u'test', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ___Variation_ref_consequence__item__loss_of_heterozygosity._cont = ASN1Dict([ (u'reference', ____Variation_ref_consequence__item__loss_of_heterozygosity_reference), (u'test', ____Variation_ref_consequence__item__loss_of_heterozygosity_test), ]) ___Variation_ref_consequence__item__loss_of_heterozygosity._ext = None __Variation_ref_consequence__item_._cont = ASN1Dict([ (u'unknown', ___Variation_ref_consequence__item__unknown), (u'splicing', ___Variation_ref_consequence__item__splicing), (u'note', ___Variation_ref_consequence__item__note), (u'variation', ___Variation_ref_consequence__item__variation), (u'frameshift', ___Variation_ref_consequence__item__frameshift), (u'loss-of-heterozygosity', ___Variation_ref_consequence__item__loss_of_heterozygosity), ]) __Variation_ref_consequence__item_._ext = None _Variation_ref_consequence._cont = __Variation_ref_consequence__item_ _Variation_ref_location = CHOICE(name=u'location', mode=MODE_TYPE, tag=(20, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) _Variation_ref_ext_locs = SET_OF(name=u'ext-locs', mode=MODE_TYPE, tag=(21, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_ext_locs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Variation', 'Ext-loc'))) _Variation_ref_ext_locs._cont = __Variation_ref_ext_locs__item_ _Variation_ref_ext = SEQ(name=u'ext', mode=MODE_TYPE, tag=(22, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'User-object')), opt=True) _Variation_ref_somatic_origin = SET_OF(name=u'somatic-origin', mode=MODE_TYPE, tag=(23, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Variation_ref_somatic_origin__item_ = SEQ(name='_item_', mode=MODE_TYPE) ___Variation_ref_somatic_origin__item__source = SEQ(name=u'source', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'SubSource')), opt=True) ___Variation_ref_somatic_origin__item__condition = SEQ(name=u'condition', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Variation_ref_somatic_origin__item__condition_description = STR_VIS(name=u'description', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ____Variation_ref_somatic_origin__item__condition_object_id = SET_OF(name=u'object-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _____Variation_ref_somatic_origin__item__condition_object_id__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) ____Variation_ref_somatic_origin__item__condition_object_id._cont = _____Variation_ref_somatic_origin__item__condition_object_id__item_ ___Variation_ref_somatic_origin__item__condition._cont = ASN1Dict([ (u'description', ____Variation_ref_somatic_origin__item__condition_description), (u'object-id', ____Variation_ref_somatic_origin__item__condition_object_id), ]) ___Variation_ref_somatic_origin__item__condition._ext = None __Variation_ref_somatic_origin__item_._cont = ASN1Dict([ (u'source', ___Variation_ref_somatic_origin__item__source), (u'condition', ___Variation_ref_somatic_origin__item__condition), ]) __Variation_ref_somatic_origin__item_._ext = None _Variation_ref_somatic_origin._cont = __Variation_ref_somatic_origin__item_ Variation_ref._cont = ASN1Dict([ (u'id', _Variation_ref_id), (u'parent-id', _Variation_ref_parent_id), (u'sample-id', _Variation_ref_sample_id), (u'other-ids', _Variation_ref_other_ids), (u'name', _Variation_ref_name), (u'synonyms', _Variation_ref_synonyms), (u'description', _Variation_ref_description), (u'phenotype', _Variation_ref_phenotype), (u'method', _Variation_ref_method), (u'population-data', _Variation_ref_population_data), (u'variant-prop', _Variation_ref_variant_prop), (u'validated', _Variation_ref_validated), (u'clinical-test', _Variation_ref_clinical_test), (u'allele-origin', _Variation_ref_allele_origin), (u'allele-state', _Variation_ref_allele_state), (u'allele-frequency', _Variation_ref_allele_frequency), (u'is-ancestral-allele', _Variation_ref_is_ancestral_allele), (u'pub', _Variation_ref_pub), (u'data', _Variation_ref_data), (u'consequence', _Variation_ref_consequence), (u'location', _Variation_ref_location), (u'ext-locs', _Variation_ref_ext_locs), (u'ext', _Variation_ref_ext), (u'somatic-origin', _Variation_ref_somatic_origin), ]) Variation_ref._ext = None #-----< Delta-item >-----# Delta_item = SEQ(name=u'Delta-item', mode=MODE_TYPE) _Delta_item_seq = CHOICE(name=u'seq', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __Delta_item_seq_literal = SEQ(name=u'literal', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-literal'))) __Delta_item_seq_loc = CHOICE(name=u'loc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) __Delta_item_seq_this = NULL(name=u'this', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Delta_item_seq._cont = ASN1Dict([ (u'literal', __Delta_item_seq_literal), (u'loc', __Delta_item_seq_loc), (u'this', __Delta_item_seq_this), ]) _Delta_item_seq._ext = None _Delta_item_multiplier = INT(name=u'multiplier', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Delta_item_multiplier_fuzz = CHOICE(name=u'multiplier-fuzz', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) _Delta_item_action = INT(name=u'action', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _Delta_item_action._cont = ASN1Dict([(u'morph', 0), (u'offset', 1), (u'del-at', 2), (u'ins-before', 3)]) Delta_item._cont = ASN1Dict([ (u'seq', _Delta_item_seq), (u'multiplier', _Delta_item_multiplier), (u'multiplier-fuzz', _Delta_item_multiplier_fuzz), (u'action', _Delta_item_action), ]) Delta_item._ext = None #-----< Variation-inst >-----# Variation_inst = SEQ(name=u'Variation-inst', mode=MODE_TYPE) _Variation_inst_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Variation_inst_type._cont = ASN1Dict([(u'unknown', 0), (u'identity', 1), (u'inv', 2), (u'snv', 3), (u'mnp', 4), (u'delins', 5), (u'del', 6), (u'ins', 7), (u'microsatellite', 8), (u'transposon', 9), (u'cnv', 10), (u'direct-copy', 11), (u'rev-direct-copy', 12), (u'inverted-copy', 13), (u'everted-copy', 14), (u'translocation', 15), (u'prot-missense', 16), (u'prot-nonsense', 17), (u'prot-neutral', 18), (u'prot-silent', 19), (u'prot-other', 20), (u'other', 255)]) _Variation_inst_delta = SEQ_OF(name=u'delta', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Variation_inst_delta__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Variation', 'Delta-item'))) _Variation_inst_delta._cont = __Variation_inst_delta__item_ _Variation_inst_observation = INT(name=u'observation', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Variation_inst_observation._cont = ASN1Dict([(u'asserted', 1), (u'reference', 2), (u'variant', 4)]) Variation_inst._cont = ASN1Dict([ (u'type', _Variation_inst_type), (u'delta', _Variation_inst_delta), (u'observation', _Variation_inst_observation), ]) Variation_inst._ext = None _all_ = [ _VariantProperties_version, _VariantProperties_resource_link, _VariantProperties_gene_location, _VariantProperties_effect, _VariantProperties_mapping, _VariantProperties_map_weight, _VariantProperties_frequency_based_validation, _VariantProperties_genotype, __VariantProperties_project_data__item_, _VariantProperties_project_data, _VariantProperties_quality_check, _VariantProperties_confidence, _VariantProperties_other_validation, _VariantProperties_allele_origin, _VariantProperties_allele_state, _VariantProperties_allele_frequency, _VariantProperties_is_ancestral_allele, VariantProperties, _Phenotype_source, _Phenotype_term, __Phenotype_xref__item_, _Phenotype_xref, _Phenotype_clinical_significance, Phenotype, _Population_data_population, _Population_data_genotype_frequency, _Population_data_chromosomes_tested, __Population_data_sample_ids__item_, _Population_data_sample_ids, _Population_data_allele_frequency, _Population_data_flags, Population_data, _Ext_loc_id, _Ext_loc_location, Ext_loc, _Variation_ref_id, _Variation_ref_parent_id, _Variation_ref_sample_id, __Variation_ref_other_ids__item_, _Variation_ref_other_ids, _Variation_ref_name, __Variation_ref_synonyms__item_, _Variation_ref_synonyms, _Variation_ref_description, __Variation_ref_phenotype__item_, _Variation_ref_phenotype, __Variation_ref_method__item_, _Variation_ref_method, __Variation_ref_population_data__item_, _Variation_ref_population_data, _Variation_ref_variant_prop, _Variation_ref_validated, __Variation_ref_clinical_test__item_, _Variation_ref_clinical_test, _Variation_ref_allele_origin, _Variation_ref_allele_state, _Variation_ref_allele_frequency, _Variation_ref_is_ancestral_allele, _Variation_ref_pub, __Variation_ref_data_unknown, __Variation_ref_data_note, __Variation_ref_data_uniparental_disomy, __Variation_ref_data_instance, ___Variation_ref_data_set_type, ____Variation_ref_data_set_variations__item_, ___Variation_ref_data_set_variations, ___Variation_ref_data_set_name, __Variation_ref_data_set, __Variation_ref_data_complex, _Variation_ref_data, ___Variation_ref_consequence__item__unknown, ___Variation_ref_consequence__item__splicing, ___Variation_ref_consequence__item__note, ___Variation_ref_consequence__item__variation, ____Variation_ref_consequence__item__frameshift_phase, ____Variation_ref_consequence__item__frameshift_x_length, ___Variation_ref_consequence__item__frameshift, ____Variation_ref_consequence__item__loss_of_heterozygosity_reference, ____Variation_ref_consequence__item__loss_of_heterozygosity_test, ___Variation_ref_consequence__item__loss_of_heterozygosity, __Variation_ref_consequence__item_, _Variation_ref_consequence, _Variation_ref_location, __Variation_ref_ext_locs__item_, _Variation_ref_ext_locs, _Variation_ref_ext, ___Variation_ref_somatic_origin__item__source, ____Variation_ref_somatic_origin__item__condition_description, _____Variation_ref_somatic_origin__item__condition_object_id__item_, ____Variation_ref_somatic_origin__item__condition_object_id, ___Variation_ref_somatic_origin__item__condition, __Variation_ref_somatic_origin__item_, _Variation_ref_somatic_origin, Variation_ref, __Delta_item_seq_literal, __Delta_item_seq_loc, __Delta_item_seq_this, _Delta_item_seq, _Delta_item_multiplier, _Delta_item_multiplier_fuzz, _Delta_item_action, Delta_item, _Variation_inst_type, __Variation_inst_delta__item_, _Variation_inst_delta, _Variation_inst_observation, Variation_inst, ] class NCBI_Rsite: _name_ = u'NCBI-Rsite' _oid_ = [] _obj_ = [ u'Rsite-ref', ] _type_ = [ u'Rsite-ref', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Rsite-ref >-----# Rsite_ref = CHOICE(name=u'Rsite-ref', mode=MODE_TYPE) _Rsite_ref_str = STR_VIS(name=u'str', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Rsite_ref_db = SEQ(name=u'db', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) Rsite_ref._cont = ASN1Dict([ (u'str', _Rsite_ref_str), (u'db', _Rsite_ref_db), ]) Rsite_ref._ext = None _all_ = [ _Rsite_ref_str, _Rsite_ref_db, Rsite_ref, ] class NCBI_RNA: _name_ = u'NCBI-RNA' _oid_ = [] _obj_ = [ u'RNA-ref', u'Trna-ext', u'RNA-gen', u'RNA-qual', u'RNA-qual-set', ] _type_ = [ u'RNA-ref', u'Trna-ext', u'RNA-gen', u'RNA-qual', u'RNA-qual-set', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< RNA-ref >-----# RNA_ref = SEQ(name=u'RNA-ref', mode=MODE_TYPE) _RNA_ref_type = ENUM(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RNA_ref_type._cont = ASN1Dict([(u'unknown', 0), (u'premsg', 1), (u'mRNA', 2), (u'tRNA', 3), (u'rRNA', 4), (u'snRNA', 5), (u'scRNA', 6), (u'snoRNA', 7), (u'ncRNA', 8), (u'tmRNA', 9), (u'miscRNA', 10), (u'other', 255)]) _RNA_ref_type._ext = None _RNA_ref_pseudo = BOOL(name=u'pseudo', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _RNA_ref_ext = CHOICE(name=u'ext', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __RNA_ref_ext_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __RNA_ref_ext_tRNA = SEQ(name=u'tRNA', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-RNA', 'Trna-ext'))) __RNA_ref_ext_gen = SEQ(name=u'gen', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-RNA', 'RNA-gen'))) _RNA_ref_ext._cont = ASN1Dict([ (u'name', __RNA_ref_ext_name), (u'tRNA', __RNA_ref_ext_tRNA), (u'gen', __RNA_ref_ext_gen), ]) _RNA_ref_ext._ext = None RNA_ref._cont = ASN1Dict([ (u'type', _RNA_ref_type), (u'pseudo', _RNA_ref_pseudo), (u'ext', _RNA_ref_ext), ]) RNA_ref._ext = None #-----< Trna-ext >-----# Trna_ext = SEQ(name=u'Trna-ext', mode=MODE_TYPE) _Trna_ext_aa = CHOICE(name=u'aa', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __Trna_ext_aa_iupacaa = INT(name=u'iupacaa', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Trna_ext_aa_ncbieaa = INT(name=u'ncbieaa', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Trna_ext_aa_ncbi8aa = INT(name=u'ncbi8aa', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Trna_ext_aa_ncbistdaa = INT(name=u'ncbistdaa', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Trna_ext_aa._cont = ASN1Dict([ (u'iupacaa', __Trna_ext_aa_iupacaa), (u'ncbieaa', __Trna_ext_aa_ncbieaa), (u'ncbi8aa', __Trna_ext_aa_ncbi8aa), (u'ncbistdaa', __Trna_ext_aa_ncbistdaa), ]) _Trna_ext_aa._ext = None _Trna_ext_codon = SET_OF(name=u'codon', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Trna_ext_codon__item_ = INT(name='_item_', mode=MODE_TYPE) _Trna_ext_codon._cont = __Trna_ext_codon__item_ _Trna_ext_anticodon = CHOICE(name=u'anticodon', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc')), opt=True) Trna_ext._cont = ASN1Dict([ (u'aa', _Trna_ext_aa), (u'codon', _Trna_ext_codon), (u'anticodon', _Trna_ext_anticodon), ]) Trna_ext._ext = None #-----< RNA-gen >-----# RNA_gen = SEQ(name=u'RNA-gen', mode=MODE_TYPE) _RNA_gen_class_ = STR_VIS(name=u'class', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _RNA_gen_product = STR_VIS(name=u'product', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _RNA_gen_quals = SEQ_OF(name=u'quals', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-RNA', 'RNA-qual-set')), opt=True) RNA_gen._cont = ASN1Dict([ (u'class', _RNA_gen_class_), (u'product', _RNA_gen_product), (u'quals', _RNA_gen_quals), ]) RNA_gen._ext = None #-----< RNA-qual >-----# RNA_qual = SEQ(name=u'RNA-qual', mode=MODE_TYPE) _RNA_qual_qual = STR_VIS(name=u'qual', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _RNA_qual_val = STR_VIS(name=u'val', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) RNA_qual._cont = ASN1Dict([ (u'qual', _RNA_qual_qual), (u'val', _RNA_qual_val), ]) RNA_qual._ext = None #-----< RNA-qual-set >-----# RNA_qual_set = SEQ_OF(name=u'RNA-qual-set', mode=MODE_TYPE) _RNA_qual_set__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-RNA', 'RNA-qual'))) RNA_qual_set._cont = _RNA_qual_set__item_ _all_ = [ _RNA_ref_type, _RNA_ref_pseudo, __RNA_ref_ext_name, __RNA_ref_ext_tRNA, __RNA_ref_ext_gen, _RNA_ref_ext, RNA_ref, __Trna_ext_aa_iupacaa, __Trna_ext_aa_ncbieaa, __Trna_ext_aa_ncbi8aa, __Trna_ext_aa_ncbistdaa, _Trna_ext_aa, __Trna_ext_codon__item_, _Trna_ext_codon, _Trna_ext_anticodon, Trna_ext, _RNA_gen_class_, _RNA_gen_product, _RNA_gen_quals, RNA_gen, _RNA_qual_qual, _RNA_qual_val, RNA_qual, _RNA_qual_set__item_, RNA_qual_set, ] class NCBI_Gene: _name_ = u'NCBI-Gene' _oid_ = [] _obj_ = [ u'Gene-ref', u'Gene-nomenclature', ] _type_ = [ u'Gene-ref', u'Gene-nomenclature', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Gene-ref >-----# Gene_ref = SEQ(name=u'Gene-ref', mode=MODE_TYPE) _Gene_ref_locus = STR_VIS(name=u'locus', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_ref_allele = STR_VIS(name=u'allele', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_ref_desc = STR_VIS(name=u'desc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_ref_maploc = STR_VIS(name=u'maploc', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_ref_pseudo = BOOL(name=u'pseudo', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Gene_ref_db = SET_OF(name=u'db', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_ref_db__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Gene_ref_db._cont = __Gene_ref_db__item_ _Gene_ref_syn = SET_OF(name=u'syn', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Gene_ref_syn__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Gene_ref_syn._cont = __Gene_ref_syn__item_ _Gene_ref_locus_tag = STR_VIS(name=u'locus-tag', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_ref_formal_name = SEQ(name=u'formal-name', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Gene', 'Gene-nomenclature')), opt=True) Gene_ref._cont = ASN1Dict([ (u'locus', _Gene_ref_locus), (u'allele', _Gene_ref_allele), (u'desc', _Gene_ref_desc), (u'maploc', _Gene_ref_maploc), (u'pseudo', _Gene_ref_pseudo), (u'db', _Gene_ref_db), (u'syn', _Gene_ref_syn), (u'locus-tag', _Gene_ref_locus_tag), (u'formal-name', _Gene_ref_formal_name), ]) Gene_ref._ext = None #-----< Gene-nomenclature >-----# Gene_nomenclature = SEQ(name=u'Gene-nomenclature', mode=MODE_TYPE) _Gene_nomenclature_status = ENUM(name=u'status', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Gene_nomenclature_status._cont = ASN1Dict([(u'unknown', 0), (u'official', 1), (u'interim', 2)]) _Gene_nomenclature_status._ext = None _Gene_nomenclature_symbol = STR_VIS(name=u'symbol', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_nomenclature_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Gene_nomenclature_source = SEQ(name=u'source', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag')), opt=True) Gene_nomenclature._cont = ASN1Dict([ (u'status', _Gene_nomenclature_status), (u'symbol', _Gene_nomenclature_symbol), (u'name', _Gene_nomenclature_name), (u'source', _Gene_nomenclature_source), ]) Gene_nomenclature._ext = None _all_ = [ _Gene_ref_locus, _Gene_ref_allele, _Gene_ref_desc, _Gene_ref_maploc, _Gene_ref_pseudo, __Gene_ref_db__item_, _Gene_ref_db, __Gene_ref_syn__item_, _Gene_ref_syn, _Gene_ref_locus_tag, _Gene_ref_formal_name, Gene_ref, _Gene_nomenclature_status, _Gene_nomenclature_symbol, _Gene_nomenclature_name, _Gene_nomenclature_source, Gene_nomenclature, ] class NCBI_Organism: _name_ = u'NCBI-Organism' _oid_ = [] _obj_ = [ u'Org-ref', u'OrgName', u'OrgMod', u'BinomialOrgName', u'MultiOrgName', u'PartialOrgName', u'TaxElement', ] _type_ = [ u'Org-ref', u'OrgName', u'OrgMod', u'BinomialOrgName', u'MultiOrgName', u'PartialOrgName', u'TaxElement', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Org-ref >-----# Org_ref = SEQ(name=u'Org-ref', mode=MODE_TYPE) _Org_ref_taxname = STR_VIS(name=u'taxname', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Org_ref_common = STR_VIS(name=u'common', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Org_ref_mod = SET_OF(name=u'mod', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Org_ref_mod__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Org_ref_mod._cont = __Org_ref_mod__item_ _Org_ref_db = SET_OF(name=u'db', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Org_ref_db__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Org_ref_db._cont = __Org_ref_db__item_ _Org_ref_syn = SET_OF(name=u'syn', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Org_ref_syn__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Org_ref_syn._cont = __Org_ref_syn__item_ _Org_ref_orgname = SEQ(name=u'orgname', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'OrgName')), opt=True) Org_ref._cont = ASN1Dict([ (u'taxname', _Org_ref_taxname), (u'common', _Org_ref_common), (u'mod', _Org_ref_mod), (u'db', _Org_ref_db), (u'syn', _Org_ref_syn), (u'orgname', _Org_ref_orgname), ]) Org_ref._ext = None #-----< OrgName >-----# OrgName = SEQ(name=u'OrgName', mode=MODE_TYPE) _OrgName_name = CHOICE(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) __OrgName_name_binomial = SEQ(name=u'binomial', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'BinomialOrgName'))) __OrgName_name_virus = STR_VIS(name=u'virus', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __OrgName_name_hybrid = SEQ_OF(name=u'hybrid', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'MultiOrgName'))) __OrgName_name_namedhybrid = SEQ(name=u'namedhybrid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'BinomialOrgName'))) __OrgName_name_partial = SEQ_OF(name=u'partial', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'PartialOrgName'))) _OrgName_name._cont = ASN1Dict([ (u'binomial', __OrgName_name_binomial), (u'virus', __OrgName_name_virus), (u'hybrid', __OrgName_name_hybrid), (u'namedhybrid', __OrgName_name_namedhybrid), (u'partial', __OrgName_name_partial), ]) _OrgName_name._ext = None _OrgName_attrib = STR_VIS(name=u'attrib', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _OrgName_mod = SEQ_OF(name=u'mod', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __OrgName_mod__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Organism', 'OrgMod'))) _OrgName_mod._cont = __OrgName_mod__item_ _OrgName_lineage = STR_VIS(name=u'lineage', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _OrgName_gcode = INT(name=u'gcode', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _OrgName_mgcode = INT(name=u'mgcode', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _OrgName_div = STR_VIS(name=u'div', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _OrgName_pgcode = INT(name=u'pgcode', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) OrgName._cont = ASN1Dict([ (u'name', _OrgName_name), (u'attrib', _OrgName_attrib), (u'mod', _OrgName_mod), (u'lineage', _OrgName_lineage), (u'gcode', _OrgName_gcode), (u'mgcode', _OrgName_mgcode), (u'div', _OrgName_div), (u'pgcode', _OrgName_pgcode), ]) OrgName._ext = None #-----< OrgMod >-----# OrgMod = SEQ(name=u'OrgMod', mode=MODE_TYPE) _OrgMod_subtype = INT(name=u'subtype', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _OrgMod_subtype._cont = ASN1Dict([(u'strain', 2), (u'substrain', 3), (u'type', 4), (u'subtype', 5), (u'variety', 6), (u'serotype', 7), (u'serogroup', 8), (u'serovar', 9), (u'cultivar', 10), (u'pathovar', 11), (u'chemovar', 12), (u'biovar', 13), (u'biotype', 14), (u'group', 15), (u'subgroup', 16), (u'isolate', 17), (u'common', 18), (u'acronym', 19), (u'dosage', 20), (u'nat-host', 21), (u'sub-species', 22), (u'specimen-voucher', 23), (u'authority', 24), (u'forma', 25), (u'forma-specialis', 26), (u'ecotype', 27), (u'synonym', 28), (u'anamorph', 29), (u'teleomorph', 30), (u'breed', 31), (u'gb-acronym', 32), (u'gb-anamorph', 33), (u'gb-synonym', 34), (u'culture-collection', 35), (u'bio-material', 36), (u'metagenome-source', 37), (u'type-material', 38), (u'old-lineage', 253), (u'old-name', 254), (u'other', 255)]) _OrgMod_subname = STR_VIS(name=u'subname', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _OrgMod_attrib = STR_VIS(name=u'attrib', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) OrgMod._cont = ASN1Dict([ (u'subtype', _OrgMod_subtype), (u'subname', _OrgMod_subname), (u'attrib', _OrgMod_attrib), ]) OrgMod._ext = None #-----< BinomialOrgName >-----# BinomialOrgName = SEQ(name=u'BinomialOrgName', mode=MODE_TYPE) _BinomialOrgName_genus = STR_VIS(name=u'genus', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _BinomialOrgName_species = STR_VIS(name=u'species', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BinomialOrgName_subspecies = STR_VIS(name=u'subspecies', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) BinomialOrgName._cont = ASN1Dict([ (u'genus', _BinomialOrgName_genus), (u'species', _BinomialOrgName_species), (u'subspecies', _BinomialOrgName_subspecies), ]) BinomialOrgName._ext = None #-----< MultiOrgName >-----# MultiOrgName = SEQ_OF(name=u'MultiOrgName', mode=MODE_TYPE) _MultiOrgName__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Organism', 'OrgName'))) MultiOrgName._cont = _MultiOrgName__item_ #-----< PartialOrgName >-----# PartialOrgName = SEQ_OF(name=u'PartialOrgName', mode=MODE_TYPE) _PartialOrgName__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Organism', 'TaxElement'))) PartialOrgName._cont = _PartialOrgName__item_ #-----< TaxElement >-----# TaxElement = SEQ(name=u'TaxElement', mode=MODE_TYPE) _TaxElement_fixed_level = INT(name=u'fixed-level', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _TaxElement_fixed_level._cont = ASN1Dict([(u'other', 0), (u'family', 1), (u'order', 2), (u'class', 3)]) _TaxElement_level = STR_VIS(name=u'level', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TaxElement_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) TaxElement._cont = ASN1Dict([ (u'fixed-level', _TaxElement_fixed_level), (u'level', _TaxElement_level), (u'name', _TaxElement_name), ]) TaxElement._ext = None _all_ = [ _Org_ref_taxname, _Org_ref_common, __Org_ref_mod__item_, _Org_ref_mod, __Org_ref_db__item_, _Org_ref_db, __Org_ref_syn__item_, _Org_ref_syn, _Org_ref_orgname, Org_ref, __OrgName_name_binomial, __OrgName_name_virus, __OrgName_name_hybrid, __OrgName_name_namedhybrid, __OrgName_name_partial, _OrgName_name, _OrgName_attrib, __OrgName_mod__item_, _OrgName_mod, _OrgName_lineage, _OrgName_gcode, _OrgName_mgcode, _OrgName_div, _OrgName_pgcode, OrgName, _OrgMod_subtype, _OrgMod_subname, _OrgMod_attrib, OrgMod, _BinomialOrgName_genus, _BinomialOrgName_species, _BinomialOrgName_subspecies, BinomialOrgName, _MultiOrgName__item_, MultiOrgName, _PartialOrgName__item_, PartialOrgName, _TaxElement_fixed_level, _TaxElement_level, _TaxElement_name, TaxElement, ] class NCBI_BioSource: _name_ = u'NCBI-BioSource' _oid_ = [] _obj_ = [ u'BioSource', u'PCRReactionSet', u'PCRReaction', u'PCRPrimerSet', u'PCRPrimer', u'PCRPrimerSeq', u'PCRPrimerName', u'SubSource', ] _type_ = [ u'BioSource', u'PCRReactionSet', u'PCRReaction', u'PCRPrimerSet', u'PCRPrimer', u'PCRPrimerSeq', u'PCRPrimerName', u'SubSource', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< BioSource >-----# BioSource = SEQ(name=u'BioSource', mode=MODE_TYPE) _BioSource_genome = INT(name=u'genome', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _BioSource_genome._cont = ASN1Dict([(u'unknown', 0), (u'genomic', 1), (u'chloroplast', 2), (u'chromoplast', 3), (u'kinetoplast', 4), (u'mitochondrion', 5), (u'plastid', 6), (u'macronuclear', 7), (u'extrachrom', 8), (u'plasmid', 9), (u'transposon', 10), (u'insertion-seq', 11), (u'cyanelle', 12), (u'proviral', 13), (u'virion', 14), (u'nucleomorph', 15), (u'apicoplast', 16), (u'leucoplast', 17), (u'proplastid', 18), (u'endogenous-virus', 19), (u'hydrogenosome', 20), (u'chromosome', 21), (u'chromatophore', 22), (u'plasmid-in-mitochondrion', 23), (u'plasmid-in-plastid', 24)]) _BioSource_origin = INT(name=u'origin', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=0) _BioSource_origin._cont = ASN1Dict([(u'unknown', 0), (u'natural', 1), (u'natmut', 2), (u'mut', 3), (u'artificial', 4), (u'synthetic', 5), (u'other', 255)]) _BioSource_org = SEQ(name=u'org', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'Org-ref'))) _BioSource_subtype = SEQ_OF(name=u'subtype', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __BioSource_subtype__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BioSource', 'SubSource'))) _BioSource_subtype._cont = __BioSource_subtype__item_ _BioSource_is_focus = NULL(name=u'is-focus', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _BioSource_pcr_primers = SET_OF(name=u'pcr-primers', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'PCRReactionSet')), opt=True) BioSource._cont = ASN1Dict([ (u'genome', _BioSource_genome), (u'origin', _BioSource_origin), (u'org', _BioSource_org), (u'subtype', _BioSource_subtype), (u'is-focus', _BioSource_is_focus), (u'pcr-primers', _BioSource_pcr_primers), ]) BioSource._ext = None #-----< PCRReactionSet >-----# PCRReactionSet = SET_OF(name=u'PCRReactionSet', mode=MODE_TYPE) _PCRReactionSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BioSource', 'PCRReaction'))) PCRReactionSet._cont = _PCRReactionSet__item_ #-----< PCRReaction >-----# PCRReaction = SEQ(name=u'PCRReaction', mode=MODE_TYPE) _PCRReaction_forward = SET_OF(name=u'forward', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'PCRPrimerSet')), opt=True) _PCRReaction_reverse = SET_OF(name=u'reverse', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'PCRPrimerSet')), opt=True) PCRReaction._cont = ASN1Dict([ (u'forward', _PCRReaction_forward), (u'reverse', _PCRReaction_reverse), ]) PCRReaction._ext = None #-----< PCRPrimerSet >-----# PCRPrimerSet = SET_OF(name=u'PCRPrimerSet', mode=MODE_TYPE) _PCRPrimerSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-BioSource', 'PCRPrimer'))) PCRPrimerSet._cont = _PCRPrimerSet__item_ #-----< PCRPrimer >-----# PCRPrimer = SEQ(name=u'PCRPrimer', mode=MODE_TYPE) _PCRPrimer_seq = STR_VIS(name=u'seq', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'PCRPrimerSeq')), opt=True) _PCRPrimer_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-BioSource', 'PCRPrimerName')), opt=True) PCRPrimer._cont = ASN1Dict([ (u'seq', _PCRPrimer_seq), (u'name', _PCRPrimer_name), ]) PCRPrimer._ext = None #-----< PCRPrimerSeq >-----# PCRPrimerSeq = STR_VIS(name=u'PCRPrimerSeq', mode=MODE_TYPE) #-----< PCRPrimerName >-----# PCRPrimerName = STR_VIS(name=u'PCRPrimerName', mode=MODE_TYPE) #-----< SubSource >-----# SubSource = SEQ(name=u'SubSource', mode=MODE_TYPE) _SubSource_subtype = INT(name=u'subtype', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SubSource_subtype._cont = ASN1Dict([(u'chromosome', 1), (u'map', 2), (u'clone', 3), (u'subclone', 4), (u'haplotype', 5), (u'genotype', 6), (u'sex', 7), (u'cell-line', 8), (u'cell-type', 9), (u'tissue-type', 10), (u'clone-lib', 11), (u'dev-stage', 12), (u'frequency', 13), (u'germline', 14), (u'rearranged', 15), (u'lab-host', 16), (u'pop-variant', 17), (u'tissue-lib', 18), (u'plasmid-name', 19), (u'transposon-name', 20), (u'insertion-seq-name', 21), (u'plastid-name', 22), (u'country', 23), (u'segment', 24), (u'endogenous-virus-name', 25), (u'transgenic', 26), (u'environmental-sample', 27), (u'isolation-source', 28), (u'lat-lon', 29), (u'collection-date', 30), (u'collected-by', 31), (u'identified-by', 32), (u'fwd-primer-seq', 33), (u'rev-primer-seq', 34), (u'fwd-primer-name', 35), (u'rev-primer-name', 36), (u'metagenomic', 37), (u'mating-type', 38), (u'linkage-group', 39), (u'haplogroup', 40), (u'whole-replicon', 41), (u'phenotype', 42), (u'altitude', 43), (u'other', 255)]) _SubSource_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SubSource_attrib = STR_VIS(name=u'attrib', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) SubSource._cont = ASN1Dict([ (u'subtype', _SubSource_subtype), (u'name', _SubSource_name), (u'attrib', _SubSource_attrib), ]) SubSource._ext = None _all_ = [ _BioSource_genome, _BioSource_origin, _BioSource_org, __BioSource_subtype__item_, _BioSource_subtype, _BioSource_is_focus, _BioSource_pcr_primers, BioSource, _PCRReactionSet__item_, PCRReactionSet, _PCRReaction_forward, _PCRReaction_reverse, PCRReaction, _PCRPrimerSet__item_, PCRPrimerSet, _PCRPrimer_seq, _PCRPrimer_name, PCRPrimer, PCRPrimerSeq, PCRPrimerName, _SubSource_subtype, _SubSource_name, _SubSource_attrib, SubSource, ] class NCBI_Protein: _name_ = u'NCBI-Protein' _oid_ = [] _obj_ = [ u'Prot-ref', ] _type_ = [ u'Prot-ref', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Prot-ref >-----# Prot_ref = SEQ(name=u'Prot-ref', mode=MODE_TYPE) _Prot_ref_name = SET_OF(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Prot_ref_name__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Prot_ref_name._cont = __Prot_ref_name__item_ _Prot_ref_desc = STR_VIS(name=u'desc', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Prot_ref_ec = SET_OF(name=u'ec', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Prot_ref_ec__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Prot_ref_ec._cont = __Prot_ref_ec__item_ _Prot_ref_activity = SET_OF(name=u'activity', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Prot_ref_activity__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Prot_ref_activity._cont = __Prot_ref_activity__item_ _Prot_ref_db = SET_OF(name=u'db', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Prot_ref_db__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Prot_ref_db._cont = __Prot_ref_db__item_ _Prot_ref_processed = ENUM(name=u'processed', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'not-set') _Prot_ref_processed._cont = ASN1Dict([(u'not-set', 0), (u'preprotein', 1), (u'mature', 2), (u'signal-peptide', 3), (u'transit-peptide', 4), (u'propeptide', 5)]) _Prot_ref_processed._ext = None Prot_ref._cont = ASN1Dict([ (u'name', _Prot_ref_name), (u'desc', _Prot_ref_desc), (u'ec', _Prot_ref_ec), (u'activity', _Prot_ref_activity), (u'db', _Prot_ref_db), (u'processed', _Prot_ref_processed), ]) Prot_ref._ext = None _all_ = [ __Prot_ref_name__item_, _Prot_ref_name, _Prot_ref_desc, __Prot_ref_ec__item_, _Prot_ref_ec, __Prot_ref_activity__item_, _Prot_ref_activity, __Prot_ref_db__item_, _Prot_ref_db, _Prot_ref_processed, Prot_ref, ] class NCBI_TxInit: _name_ = u'NCBI-TxInit' _oid_ = [] _obj_ = [ u'Txinit', u'Tx-evidence', ] _type_ = [ u'Txinit', u'Tx-evidence', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Txinit >-----# Txinit = SEQ(name=u'Txinit', mode=MODE_TYPE) _Txinit_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Txinit_syn = SEQ_OF(name=u'syn', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Txinit_syn__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Txinit_syn._cont = __Txinit_syn__item_ _Txinit_gene = SEQ_OF(name=u'gene', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Txinit_gene__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Gene', 'Gene-ref'))) _Txinit_gene._cont = __Txinit_gene__item_ _Txinit_protein = SEQ_OF(name=u'protein', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Txinit_protein__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Protein', 'Prot-ref'))) _Txinit_protein._cont = __Txinit_protein__item_ _Txinit_rna = SEQ_OF(name=u'rna', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Txinit_rna__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Txinit_rna._cont = __Txinit_rna__item_ _Txinit_expression = STR_VIS(name=u'expression', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Txinit_txsystem = ENUM(name=u'txsystem', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Txinit_txsystem._cont = ASN1Dict([(u'unknown', 0), (u'pol1', 1), (u'pol2', 2), (u'pol3', 3), (u'bacterial', 4), (u'viral', 5), (u'rna', 6), (u'organelle', 7), (u'other', 255)]) _Txinit_txsystem._ext = None _Txinit_txdescr = STR_VIS(name=u'txdescr', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Txinit_txorg = SEQ(name=u'txorg', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Organism', 'Org-ref')), opt=True) _Txinit_mapping_precise = BOOL(name=u'mapping-precise', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Txinit_location_accurate = BOOL(name=u'location-accurate', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Txinit_inittype = ENUM(name=u'inittype', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Txinit_inittype._cont = ASN1Dict([(u'unknown', 0), (u'single', 1), (u'multiple', 2), (u'region', 3)]) _Txinit_inittype._ext = None _Txinit_evidence = SET_OF(name=u'evidence', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Txinit_evidence__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-TxInit', 'Tx-evidence'))) _Txinit_evidence._cont = __Txinit_evidence__item_ Txinit._cont = ASN1Dict([ (u'name', _Txinit_name), (u'syn', _Txinit_syn), (u'gene', _Txinit_gene), (u'protein', _Txinit_protein), (u'rna', _Txinit_rna), (u'expression', _Txinit_expression), (u'txsystem', _Txinit_txsystem), (u'txdescr', _Txinit_txdescr), (u'txorg', _Txinit_txorg), (u'mapping-precise', _Txinit_mapping_precise), (u'location-accurate', _Txinit_location_accurate), (u'inittype', _Txinit_inittype), (u'evidence', _Txinit_evidence), ]) Txinit._ext = None #-----< Tx-evidence >-----# Tx_evidence = SEQ(name=u'Tx-evidence', mode=MODE_TYPE) _Tx_evidence_exp_code = ENUM(name=u'exp-code', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Tx_evidence_exp_code._cont = ASN1Dict([(u'unknown', 0), (u'rna-seq', 1), (u'rna-size', 2), (u'np-map', 3), (u'np-size', 4), (u'pe-seq', 5), (u'cDNA-seq', 6), (u'pe-map', 7), (u'pe-size', 8), (u'pseudo-seq', 9), (u'rev-pe-map', 10), (u'other', 255)]) _Tx_evidence_exp_code._ext = None _Tx_evidence_expression_system = ENUM(name=u'expression-system', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'physiological') _Tx_evidence_expression_system._cont = ASN1Dict([(u'unknown', 0), (u'physiological', 1), (u'in-vitro', 2), (u'oocyte', 3), (u'transfection', 4), (u'transgenic', 5), (u'other', 255)]) _Tx_evidence_expression_system._ext = None _Tx_evidence_low_prec_data = BOOL(name=u'low-prec-data', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Tx_evidence_from_homolog = BOOL(name=u'from-homolog', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) Tx_evidence._cont = ASN1Dict([ (u'exp-code', _Tx_evidence_exp_code), (u'expression-system', _Tx_evidence_expression_system), (u'low-prec-data', _Tx_evidence_low_prec_data), (u'from-homolog', _Tx_evidence_from_homolog), ]) Tx_evidence._ext = None _all_ = [ _Txinit_name, __Txinit_syn__item_, _Txinit_syn, __Txinit_gene__item_, _Txinit_gene, __Txinit_protein__item_, _Txinit_protein, __Txinit_rna__item_, _Txinit_rna, _Txinit_expression, _Txinit_txsystem, _Txinit_txdescr, _Txinit_txorg, _Txinit_mapping_precise, _Txinit_location_accurate, _Txinit_inittype, __Txinit_evidence__item_, _Txinit_evidence, Txinit, _Tx_evidence_exp_code, _Tx_evidence_expression_system, _Tx_evidence_low_prec_data, _Tx_evidence_from_homolog, Tx_evidence, ] class NCBI_Seqloc: _name_ = u'NCBI-Seqloc' _oid_ = [] _obj_ = [ u'Seq-id', u'Seq-id-set', u'Patent-seq-id', u'Textseq-id', u'Giimport-id', u'PDB-seq-id', u'PDB-mol-id', u'Seq-loc', u'Seq-interval', u'Packed-seqint', u'Seq-point', u'Packed-seqpnt', u'Na-strand', u'Seq-bond', u'Seq-loc-mix', u'Seq-loc-equiv', ] _type_ = [ u'Seq-id', u'Seq-id-set', u'Patent-seq-id', u'Textseq-id', u'Giimport-id', u'PDB-seq-id', u'PDB-mol-id', u'Seq-loc', u'Seq-interval', u'Packed-seqint', u'Seq-point', u'Packed-seqpnt', u'Na-strand', u'Seq-bond', u'Seq-loc-mix', u'Seq-loc-equiv', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Seq-id >-----# Seq_id = CHOICE(name=u'Seq-id', mode=MODE_TYPE) _Seq_id_local = CHOICE(name=u'local', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id'))) _Seq_id_gibbsq = INT(name=u'gibbsq', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_id_gibbmt = INT(name=u'gibbmt', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_id_giim = SEQ(name=u'giim', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Giimport-id'))) _Seq_id_genbank = SEQ(name=u'genbank', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_embl = SEQ(name=u'embl', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_pir = SEQ(name=u'pir', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_swissprot = SEQ(name=u'swissprot', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_patent = SEQ(name=u'patent', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Patent-seq-id'))) _Seq_id_other = SEQ(name=u'other', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_general = SEQ(name=u'general', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag'))) _Seq_id_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_id_ddbj = SEQ(name=u'ddbj', mode=MODE_TYPE, tag=(12, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_prf = SEQ(name=u'prf', mode=MODE_TYPE, tag=(13, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_pdb = SEQ(name=u'pdb', mode=MODE_TYPE, tag=(14, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'PDB-seq-id'))) _Seq_id_tpg = SEQ(name=u'tpg', mode=MODE_TYPE, tag=(15, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_tpe = SEQ(name=u'tpe', mode=MODE_TYPE, tag=(16, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_tpd = SEQ(name=u'tpd', mode=MODE_TYPE, tag=(17, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_gpipe = SEQ(name=u'gpipe', mode=MODE_TYPE, tag=(18, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) _Seq_id_named_annot_track = SEQ(name=u'named-annot-track', mode=MODE_TYPE, tag=(19, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Textseq-id'))) Seq_id._cont = ASN1Dict([ (u'local', _Seq_id_local), (u'gibbsq', _Seq_id_gibbsq), (u'gibbmt', _Seq_id_gibbmt), (u'giim', _Seq_id_giim), (u'genbank', _Seq_id_genbank), (u'embl', _Seq_id_embl), (u'pir', _Seq_id_pir), (u'swissprot', _Seq_id_swissprot), (u'patent', _Seq_id_patent), (u'other', _Seq_id_other), (u'general', _Seq_id_general), (u'gi', _Seq_id_gi), (u'ddbj', _Seq_id_ddbj), (u'prf', _Seq_id_prf), (u'pdb', _Seq_id_pdb), (u'tpg', _Seq_id_tpg), (u'tpe', _Seq_id_tpe), (u'tpd', _Seq_id_tpd), (u'gpipe', _Seq_id_gpipe), (u'named-annot-track', _Seq_id_named_annot_track), ]) Seq_id._ext = None #-----< Seq-id-set >-----# Seq_id_set = SET_OF(name=u'Seq-id-set', mode=MODE_TYPE) _Seq_id_set__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) Seq_id_set._cont = _Seq_id_set__item_ #-----< Patent-seq-id >-----# Patent_seq_id = SEQ(name=u'Patent-seq-id', mode=MODE_TYPE) _Patent_seq_id_seqid = INT(name=u'seqid', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Patent_seq_id_cit = SEQ(name=u'cit', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Id-pat'))) Patent_seq_id._cont = ASN1Dict([ (u'seqid', _Patent_seq_id_seqid), (u'cit', _Patent_seq_id_cit), ]) Patent_seq_id._ext = None #-----< Textseq-id >-----# Textseq_id = SEQ(name=u'Textseq-id', mode=MODE_TYPE) _Textseq_id_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Textseq_id_accession = STR_VIS(name=u'accession', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Textseq_id_release = STR_VIS(name=u'release', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Textseq_id_version = INT(name=u'version', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Textseq_id._cont = ASN1Dict([ (u'name', _Textseq_id_name), (u'accession', _Textseq_id_accession), (u'release', _Textseq_id_release), (u'version', _Textseq_id_version), ]) Textseq_id._ext = None #-----< Giimport-id >-----# Giimport_id = SEQ(name=u'Giimport-id', mode=MODE_TYPE) _Giimport_id_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Giimport_id_db = STR_VIS(name=u'db', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Giimport_id_release = STR_VIS(name=u'release', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Giimport_id._cont = ASN1Dict([ (u'id', _Giimport_id_id), (u'db', _Giimport_id_db), (u'release', _Giimport_id_release), ]) Giimport_id._ext = None #-----< PDB-seq-id >-----# PDB_seq_id = SEQ(name=u'PDB-seq-id', mode=MODE_TYPE) _PDB_seq_id_mol = STR_VIS(name=u'mol', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'PDB-mol-id'))) _PDB_seq_id_chain = INT(name=u'chain', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=32) _PDB_seq_id_rel = CHOICE(name=u'rel', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) PDB_seq_id._cont = ASN1Dict([ (u'mol', _PDB_seq_id_mol), (u'chain', _PDB_seq_id_chain), (u'rel', _PDB_seq_id_rel), ]) PDB_seq_id._ext = None #-----< PDB-mol-id >-----# PDB_mol_id = STR_VIS(name=u'PDB-mol-id', mode=MODE_TYPE) #-----< Seq-loc >-----# Seq_loc = CHOICE(name=u'Seq-loc', mode=MODE_TYPE) _Seq_loc_null = NULL(name=u'null', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_loc_empty = CHOICE(name=u'empty', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Seq_loc_whole = CHOICE(name=u'whole', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Seq_loc_int = SEQ(name=u'int', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval'))) _Seq_loc_packed_int = SEQ_OF(name=u'packed-int', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Packed-seqint'))) _Seq_loc_pnt = SEQ(name=u'pnt', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-point'))) _Seq_loc_packed_pnt = SEQ(name=u'packed-pnt', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Packed-seqpnt'))) _Seq_loc_mix = SEQ_OF(name=u'mix', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc-mix'))) _Seq_loc_equiv = SET_OF(name=u'equiv', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc-equiv'))) _Seq_loc_bond = SEQ(name=u'bond', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-bond'))) _Seq_loc_feat = CHOICE(name=u'feat', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqfeat', 'Feat-id'))) Seq_loc._cont = ASN1Dict([ (u'null', _Seq_loc_null), (u'empty', _Seq_loc_empty), (u'whole', _Seq_loc_whole), (u'int', _Seq_loc_int), (u'packed-int', _Seq_loc_packed_int), (u'pnt', _Seq_loc_pnt), (u'packed-pnt', _Seq_loc_packed_pnt), (u'mix', _Seq_loc_mix), (u'equiv', _Seq_loc_equiv), (u'bond', _Seq_loc_bond), (u'feat', _Seq_loc_feat), ]) Seq_loc._ext = None #-----< Seq-interval >-----# Seq_interval = SEQ(name=u'Seq-interval', mode=MODE_TYPE) _Seq_interval_from_ = INT(name=u'from', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_interval_to = INT(name=u'to', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_interval_strand = ENUM(name=u'strand', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Seq_interval_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Seq_interval_fuzz_from = CHOICE(name=u'fuzz-from', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) _Seq_interval_fuzz_to = CHOICE(name=u'fuzz-to', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) Seq_interval._cont = ASN1Dict([ (u'from', _Seq_interval_from_), (u'to', _Seq_interval_to), (u'strand', _Seq_interval_strand), (u'id', _Seq_interval_id), (u'fuzz-from', _Seq_interval_fuzz_from), (u'fuzz-to', _Seq_interval_fuzz_to), ]) Seq_interval._ext = None #-----< Packed-seqint >-----# Packed_seqint = SEQ_OF(name=u'Packed-seqint', mode=MODE_TYPE) _Packed_seqint__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval'))) Packed_seqint._cont = _Packed_seqint__item_ #-----< Seq-point >-----# Seq_point = SEQ(name=u'Seq-point', mode=MODE_TYPE) _Seq_point_point = INT(name=u'point', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_point_strand = ENUM(name=u'strand', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Seq_point_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Seq_point_fuzz = CHOICE(name=u'fuzz', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) Seq_point._cont = ASN1Dict([ (u'point', _Seq_point_point), (u'strand', _Seq_point_strand), (u'id', _Seq_point_id), (u'fuzz', _Seq_point_fuzz), ]) Seq_point._ext = None #-----< Packed-seqpnt >-----# Packed_seqpnt = SEQ(name=u'Packed-seqpnt', mode=MODE_TYPE) _Packed_seqpnt_strand = ENUM(name=u'strand', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Na-strand')), opt=True) _Packed_seqpnt_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _Packed_seqpnt_fuzz = CHOICE(name=u'fuzz', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Int-fuzz')), opt=True) _Packed_seqpnt_points = SEQ_OF(name=u'points', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Packed_seqpnt_points__item_ = INT(name='_item_', mode=MODE_TYPE) _Packed_seqpnt_points._cont = __Packed_seqpnt_points__item_ Packed_seqpnt._cont = ASN1Dict([ (u'strand', _Packed_seqpnt_strand), (u'id', _Packed_seqpnt_id), (u'fuzz', _Packed_seqpnt_fuzz), (u'points', _Packed_seqpnt_points), ]) Packed_seqpnt._ext = None #-----< Na-strand >-----# Na_strand = ENUM(name=u'Na-strand', mode=MODE_TYPE) Na_strand._cont = ASN1Dict([(u'unknown', 0), (u'plus', 1), (u'minus', 2), (u'both', 3), (u'both-rev', 4), (u'other', 255)]) Na_strand._ext = None #-----< Seq-bond >-----# Seq_bond = SEQ(name=u'Seq-bond', mode=MODE_TYPE) _Seq_bond_a = SEQ(name=u'a', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-point'))) _Seq_bond_b = SEQ(name=u'b', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-point')), opt=True) Seq_bond._cont = ASN1Dict([ (u'a', _Seq_bond_a), (u'b', _Seq_bond_b), ]) Seq_bond._ext = None #-----< Seq-loc-mix >-----# Seq_loc_mix = SEQ_OF(name=u'Seq-loc-mix', mode=MODE_TYPE) _Seq_loc_mix__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) Seq_loc_mix._cont = _Seq_loc_mix__item_ #-----< Seq-loc-equiv >-----# Seq_loc_equiv = SET_OF(name=u'Seq-loc-equiv', mode=MODE_TYPE) _Seq_loc_equiv__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) Seq_loc_equiv._cont = _Seq_loc_equiv__item_ _all_ = [ _Seq_id_local, _Seq_id_gibbsq, _Seq_id_gibbmt, _Seq_id_giim, _Seq_id_genbank, _Seq_id_embl, _Seq_id_pir, _Seq_id_swissprot, _Seq_id_patent, _Seq_id_other, _Seq_id_general, _Seq_id_gi, _Seq_id_ddbj, _Seq_id_prf, _Seq_id_pdb, _Seq_id_tpg, _Seq_id_tpe, _Seq_id_tpd, _Seq_id_gpipe, _Seq_id_named_annot_track, Seq_id, _Seq_id_set__item_, Seq_id_set, _Patent_seq_id_seqid, _Patent_seq_id_cit, Patent_seq_id, _Textseq_id_name, _Textseq_id_accession, _Textseq_id_release, _Textseq_id_version, Textseq_id, _Giimport_id_id, _Giimport_id_db, _Giimport_id_release, Giimport_id, _PDB_seq_id_mol, _PDB_seq_id_chain, _PDB_seq_id_rel, PDB_seq_id, PDB_mol_id, _Seq_loc_null, _Seq_loc_empty, _Seq_loc_whole, _Seq_loc_int, _Seq_loc_packed_int, _Seq_loc_pnt, _Seq_loc_packed_pnt, _Seq_loc_mix, _Seq_loc_equiv, _Seq_loc_bond, _Seq_loc_feat, Seq_loc, _Seq_interval_from_, _Seq_interval_to, _Seq_interval_strand, _Seq_interval_id, _Seq_interval_fuzz_from, _Seq_interval_fuzz_to, Seq_interval, _Packed_seqint__item_, Packed_seqint, _Seq_point_point, _Seq_point_strand, _Seq_point_id, _Seq_point_fuzz, Seq_point, _Packed_seqpnt_strand, _Packed_seqpnt_id, _Packed_seqpnt_fuzz, __Packed_seqpnt_points__item_, _Packed_seqpnt_points, Packed_seqpnt, Na_strand, _Seq_bond_a, _Seq_bond_b, Seq_bond, _Seq_loc_mix__item_, Seq_loc_mix, _Seq_loc_equiv__item_, Seq_loc_equiv, ] class NCBI_Seqres: _name_ = u'NCBI-Seqres' _oid_ = [] _obj_ = [ u'Seq-graph', u'Real-graph', u'Int-graph', u'Byte-graph', ] _type_ = [ u'Seq-graph', u'Real-graph', u'Int-graph', u'Byte-graph', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Seq-graph >-----# Seq_graph = SEQ(name=u'Seq-graph', mode=MODE_TYPE) _Seq_graph_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_graph_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_graph_loc = CHOICE(name=u'loc', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _Seq_graph_title_x = STR_VIS(name=u'title-x', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_graph_title_y = STR_VIS(name=u'title-y', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_graph_comp = INT(name=u'comp', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_graph_a = REAL(name=u'a', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Seq_graph_b = REAL(name=u'b', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL')), opt=True) _Seq_graph_numval = INT(name=u'numval', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_graph_graph = CHOICE(name=u'graph', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Seq_graph_graph_real = SEQ(name=u'real', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqres', 'Real-graph'))) __Seq_graph_graph_int = SEQ(name=u'int', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqres', 'Int-graph'))) __Seq_graph_graph_byte = SEQ(name=u'byte', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqres', 'Byte-graph'))) _Seq_graph_graph._cont = ASN1Dict([ (u'real', __Seq_graph_graph_real), (u'int', __Seq_graph_graph_int), (u'byte', __Seq_graph_graph_byte), ]) _Seq_graph_graph._ext = None Seq_graph._cont = ASN1Dict([ (u'title', _Seq_graph_title), (u'comment', _Seq_graph_comment), (u'loc', _Seq_graph_loc), (u'title-x', _Seq_graph_title_x), (u'title-y', _Seq_graph_title_y), (u'comp', _Seq_graph_comp), (u'a', _Seq_graph_a), (u'b', _Seq_graph_b), (u'numval', _Seq_graph_numval), (u'graph', _Seq_graph_graph), ]) Seq_graph._ext = None #-----< Real-graph >-----# Real_graph = SEQ(name=u'Real-graph', mode=MODE_TYPE) _Real_graph_max = REAL(name=u'max', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Real_graph_min = REAL(name=u'min', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Real_graph_axis = REAL(name=u'axis', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Real_graph_values = SEQ_OF(name=u'values', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Real_graph_values__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _Real_graph_values._cont = __Real_graph_values__item_ Real_graph._cont = ASN1Dict([ (u'max', _Real_graph_max), (u'min', _Real_graph_min), (u'axis', _Real_graph_axis), (u'values', _Real_graph_values), ]) Real_graph._ext = None #-----< Int-graph >-----# Int_graph = SEQ(name=u'Int-graph', mode=MODE_TYPE) _Int_graph_max = INT(name=u'max', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_graph_min = INT(name=u'min', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_graph_axis = INT(name=u'axis', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Int_graph_values = SEQ_OF(name=u'values', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Int_graph_values__item_ = INT(name='_item_', mode=MODE_TYPE) _Int_graph_values._cont = __Int_graph_values__item_ Int_graph._cont = ASN1Dict([ (u'max', _Int_graph_max), (u'min', _Int_graph_min), (u'axis', _Int_graph_axis), (u'values', _Int_graph_values), ]) Int_graph._ext = None #-----< Byte-graph >-----# Byte_graph = SEQ(name=u'Byte-graph', mode=MODE_TYPE) _Byte_graph_max = INT(name=u'max', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Byte_graph_min = INT(name=u'min', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Byte_graph_axis = INT(name=u'axis', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Byte_graph_values = OCT_STR(name=u'values', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) Byte_graph._cont = ASN1Dict([ (u'max', _Byte_graph_max), (u'min', _Byte_graph_min), (u'axis', _Byte_graph_axis), (u'values', _Byte_graph_values), ]) Byte_graph._ext = None _all_ = [ _Seq_graph_title, _Seq_graph_comment, _Seq_graph_loc, _Seq_graph_title_x, _Seq_graph_title_y, _Seq_graph_comp, _Seq_graph_a, _Seq_graph_b, _Seq_graph_numval, __Seq_graph_graph_real, __Seq_graph_graph_int, __Seq_graph_graph_byte, _Seq_graph_graph, Seq_graph, _Real_graph_max, _Real_graph_min, _Real_graph_axis, __Real_graph_values__item_, _Real_graph_values, Real_graph, _Int_graph_max, _Int_graph_min, _Int_graph_axis, __Int_graph_values__item_, _Int_graph_values, Int_graph, _Byte_graph_max, _Byte_graph_min, _Byte_graph_axis, _Byte_graph_values, Byte_graph, ] class NCBI_Seqset: _name_ = u'NCBI-Seqset' _oid_ = [] _obj_ = [ u'Bioseq-set', u'Seq-entry', ] _type_ = [ u'Bioseq-set', u'Seq-entry', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Bioseq-set >-----# Bioseq_set = SEQ(name=u'Bioseq-set', mode=MODE_TYPE) _Bioseq_set_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id')), opt=True) _Bioseq_set_coll = SEQ(name=u'coll', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-General', 'Dbtag')), opt=True) _Bioseq_set_level = INT(name=u'level', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Bioseq_set_class_ = ENUM(name=u'class', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=u'not-set') _Bioseq_set_class_._cont = ASN1Dict([(u'not-set', 0), (u'nuc-prot', 1), (u'segset', 2), (u'conset', 3), (u'parts', 4), (u'gibb', 5), (u'gi', 6), (u'genbank', 7), (u'pir', 8), (u'pub-set', 9), (u'equiv', 10), (u'swissprot', 11), (u'pdb-entry', 12), (u'mut-set', 13), (u'pop-set', 14), (u'phy-set', 15), (u'eco-set', 16), (u'gen-prod-set', 17), (u'wgs-set', 18), (u'named-annot', 19), (u'named-annot-prod', 20), (u'read-set', 21), (u'paired-end-reads', 22), (u'small-genome-set', 23), (u'other', 255)]) _Bioseq_set_class_._ext = None _Bioseq_set_release = STR_VIS(name=u'release', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Bioseq_set_date = CHOICE(name=u'date', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Bioseq_set_descr = SET_OF(name=u'descr', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-descr')), opt=True) _Bioseq_set_seq_set = SEQ_OF(name=u'seq-set', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Bioseq_set_seq_set__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) _Bioseq_set_seq_set._cont = __Bioseq_set_seq_set__item_ _Bioseq_set_annot = SET_OF(name=u'annot', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Bioseq_set_annot__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _Bioseq_set_annot._cont = __Bioseq_set_annot__item_ Bioseq_set._cont = ASN1Dict([ (u'id', _Bioseq_set_id), (u'coll', _Bioseq_set_coll), (u'level', _Bioseq_set_level), (u'class', _Bioseq_set_class_), (u'release', _Bioseq_set_release), (u'date', _Bioseq_set_date), (u'descr', _Bioseq_set_descr), (u'seq-set', _Bioseq_set_seq_set), (u'annot', _Bioseq_set_annot), ]) Bioseq_set._ext = None #-----< Seq-entry >-----# Seq_entry = CHOICE(name=u'Seq-entry', mode=MODE_TYPE) _Seq_entry_seq = SEQ(name=u'seq', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) _Seq_entry_set = SEQ(name=u'set', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Bioseq-set'))) Seq_entry._cont = ASN1Dict([ (u'seq', _Seq_entry_seq), (u'set', _Seq_entry_set), ]) Seq_entry._ext = None _all_ = [ _Bioseq_set_id, _Bioseq_set_coll, _Bioseq_set_level, _Bioseq_set_class_, _Bioseq_set_release, _Bioseq_set_date, _Bioseq_set_descr, __Bioseq_set_seq_set__item_, _Bioseq_set_seq_set, __Bioseq_set_annot__item_, _Bioseq_set_annot, Bioseq_set, _Seq_entry_seq, _Seq_entry_set, Seq_entry, ] class NCBI_Seq_split: _name_ = u'NCBI-Seq-split' _oid_ = [] _obj_ = [ u'ID2S-Split-Info', u'ID2S-Bioseqs-Info', u'ID2S-Bioseq-Info', u'ID2S-Chunk-Info', u'ID2S-Chunk-Content', u'ID2S-Seq-descr-Info', u'ID2S-Seq-annot-Info', u'ID2S-Seq-annot-place-Info', u'ID2S-Seq-feat-Ids-Info', u'ID2S-Feat-type-Info', u'ID2S-Seq-assembly-Info', u'ID2S-Seq-map-Info', u'ID2S-Seq-data-Info', u'ID2S-Bioseq-place-Info', u'ID2S-Chunk', u'ID2S-Chunk-Data', u'ID2S-Sequence-Piece', u'ID2S-Chunk-Id', u'ID2S-Bioseq-set-Ids', u'ID2S-Bioseq-Ids', u'ID2S-Gi-Range', u'ID2S-Seq-loc', u'ID2S-Gi-Interval', u'ID2S-Seq-id-Interval', u'ID2S-Interval', u'ID2S-Gi-Ints', u'ID2S-Seq-id-Ints', ] _type_ = [ u'ID2S-Split-Info', u'ID2S-Bioseqs-Info', u'ID2S-Bioseq-Info', u'ID2S-Chunk-Info', u'ID2S-Chunk-Content', u'ID2S-Seq-descr-Info', u'ID2S-Seq-annot-Info', u'ID2S-Seq-annot-place-Info', u'ID2S-Seq-feat-Ids-Info', u'ID2S-Feat-type-Info', u'ID2S-Seq-assembly-Info', u'ID2S-Seq-map-Info', u'ID2S-Seq-data-Info', u'ID2S-Bioseq-place-Info', u'ID2S-Chunk', u'ID2S-Chunk-Data', u'ID2S-Sequence-Piece', u'ID2S-Chunk-Id', u'ID2S-Bioseq-set-Ids', u'ID2S-Bioseq-Ids', u'ID2S-Gi-Range', u'ID2S-Seq-loc', u'ID2S-Gi-Interval', u'ID2S-Seq-id-Interval', u'ID2S-Interval', u'ID2S-Gi-Ints', u'ID2S-Seq-id-Ints', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< ID2S-Split-Info >-----# ID2S_Split_Info = SEQ(name=u'ID2S-Split-Info', mode=MODE_TYPE) _ID2S_Split_Info_bioseqs_info = SET_OF(name=u'bioseqs-info', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Split_Info_bioseqs_info__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseqs-Info'))) _ID2S_Split_Info_bioseqs_info._cont = __ID2S_Split_Info_bioseqs_info__item_ _ID2S_Split_Info_chunks = SET_OF(name=u'chunks', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Split_Info_chunks__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Chunk-Info'))) _ID2S_Split_Info_chunks._cont = __ID2S_Split_Info_chunks__item_ _ID2S_Split_Info_skeleton = CHOICE(name=u'skeleton', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry')), opt=True) ID2S_Split_Info._cont = ASN1Dict([ (u'bioseqs-info', _ID2S_Split_Info_bioseqs_info), (u'chunks', _ID2S_Split_Info_chunks), (u'skeleton', _ID2S_Split_Info_skeleton), ]) ID2S_Split_Info._ext = None #-----< ID2S-Bioseqs-Info >-----# ID2S_Bioseqs_Info = SEQ(name=u'ID2S-Bioseqs-Info', mode=MODE_TYPE) _ID2S_Bioseqs_Info_info = SEQ(name=u'info', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-Info'))) _ID2S_Bioseqs_Info_bioseqs = SET_OF(name=u'bioseqs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-Ids'))) ID2S_Bioseqs_Info._cont = ASN1Dict([ (u'info', _ID2S_Bioseqs_Info_info), (u'bioseqs', _ID2S_Bioseqs_Info_bioseqs), ]) ID2S_Bioseqs_Info._ext = None #-----< ID2S-Bioseq-Info >-----# ID2S_Bioseq_Info = SEQ(name=u'ID2S-Bioseq-Info', mode=MODE_TYPE) _ID2S_Bioseq_Info_gap_count = INT(name=u'gap-count', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2S_Bioseq_Info_seq_map_has_ref = BOOL(name=u'seq-map-has-ref', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) ID2S_Bioseq_Info._cont = ASN1Dict([ (u'gap-count', _ID2S_Bioseq_Info_gap_count), (u'seq-map-has-ref', _ID2S_Bioseq_Info_seq_map_has_ref), ]) ID2S_Bioseq_Info._ext = None #-----< ID2S-Chunk-Info >-----# ID2S_Chunk_Info = SEQ(name=u'ID2S-Chunk-Info', mode=MODE_TYPE) _ID2S_Chunk_Info_id = INT(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Chunk-Id'))) _ID2S_Chunk_Info_content = SET_OF(name=u'content', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Chunk_Info_content__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Chunk-Content'))) _ID2S_Chunk_Info_content._cont = __ID2S_Chunk_Info_content__item_ ID2S_Chunk_Info._cont = ASN1Dict([ (u'id', _ID2S_Chunk_Info_id), (u'content', _ID2S_Chunk_Info_content), ]) ID2S_Chunk_Info._ext = None #-----< ID2S-Chunk-Content >-----# ID2S_Chunk_Content = CHOICE(name=u'ID2S-Chunk-Content', mode=MODE_TYPE) _ID2S_Chunk_Content_seq_descr = SEQ(name=u'seq-descr', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-descr-Info'))) _ID2S_Chunk_Content_seq_annot = SEQ(name=u'seq-annot', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-annot-Info'))) _ID2S_Chunk_Content_seq_assembly = SEQ(name=u'seq-assembly', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-assembly-Info'))) _ID2S_Chunk_Content_seq_map = CHOICE(name=u'seq-map', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-map-Info'))) _ID2S_Chunk_Content_seq_data = CHOICE(name=u'seq-data', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-data-Info'))) _ID2S_Chunk_Content_seq_annot_place = SEQ(name=u'seq-annot-place', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-annot-place-Info'))) _ID2S_Chunk_Content_bioseq_place = SET_OF(name=u'bioseq-place', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Chunk_Content_bioseq_place__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-place-Info'))) _ID2S_Chunk_Content_bioseq_place._cont = __ID2S_Chunk_Content_bioseq_place__item_ _ID2S_Chunk_Content_feat_ids = SET_OF(name=u'feat-ids', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Chunk_Content_feat_ids__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-feat-Ids-Info'))) _ID2S_Chunk_Content_feat_ids._cont = __ID2S_Chunk_Content_feat_ids__item_ ID2S_Chunk_Content._cont = ASN1Dict([ (u'seq-descr', _ID2S_Chunk_Content_seq_descr), (u'seq-annot', _ID2S_Chunk_Content_seq_annot), (u'seq-assembly', _ID2S_Chunk_Content_seq_assembly), (u'seq-map', _ID2S_Chunk_Content_seq_map), (u'seq-data', _ID2S_Chunk_Content_seq_data), (u'seq-annot-place', _ID2S_Chunk_Content_seq_annot_place), (u'bioseq-place', _ID2S_Chunk_Content_bioseq_place), (u'feat-ids', _ID2S_Chunk_Content_feat_ids), ]) ID2S_Chunk_Content._ext = None #-----< ID2S-Seq-descr-Info >-----# ID2S_Seq_descr_Info = SEQ(name=u'ID2S-Seq-descr-Info', mode=MODE_TYPE) _ID2S_Seq_descr_Info_type_mask = INT(name=u'type-mask', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Seq_descr_Info_bioseqs = SET_OF(name=u'bioseqs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-Ids')), opt=True) _ID2S_Seq_descr_Info_bioseq_sets = SET_OF(name=u'bioseq-sets', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-set-Ids')), opt=True) ID2S_Seq_descr_Info._cont = ASN1Dict([ (u'type-mask', _ID2S_Seq_descr_Info_type_mask), (u'bioseqs', _ID2S_Seq_descr_Info_bioseqs), (u'bioseq-sets', _ID2S_Seq_descr_Info_bioseq_sets), ]) ID2S_Seq_descr_Info._ext = None #-----< ID2S-Seq-annot-Info >-----# ID2S_Seq_annot_Info = SEQ(name=u'ID2S-Seq-annot-Info', mode=MODE_TYPE) _ID2S_Seq_annot_Info_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2S_Seq_annot_Info_align = NULL(name=u'align', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2S_Seq_annot_Info_graph = NULL(name=u'graph', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2S_Seq_annot_Info_feat = SET_OF(name=u'feat', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Seq_annot_Info_feat__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Feat-type-Info'))) _ID2S_Seq_annot_Info_feat._cont = __ID2S_Seq_annot_Info_feat__item_ _ID2S_Seq_annot_Info_seq_loc = CHOICE(name=u'seq-loc', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-loc')), opt=True) ID2S_Seq_annot_Info._cont = ASN1Dict([ (u'name', _ID2S_Seq_annot_Info_name), (u'align', _ID2S_Seq_annot_Info_align), (u'graph', _ID2S_Seq_annot_Info_graph), (u'feat', _ID2S_Seq_annot_Info_feat), (u'seq-loc', _ID2S_Seq_annot_Info_seq_loc), ]) ID2S_Seq_annot_Info._ext = None #-----< ID2S-Seq-annot-place-Info >-----# ID2S_Seq_annot_place_Info = SEQ(name=u'ID2S-Seq-annot-place-Info', mode=MODE_TYPE) _ID2S_Seq_annot_place_Info_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _ID2S_Seq_annot_place_Info_bioseqs = SET_OF(name=u'bioseqs', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-Ids')), opt=True) _ID2S_Seq_annot_place_Info_bioseq_sets = SET_OF(name=u'bioseq-sets', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-set-Ids')), opt=True) ID2S_Seq_annot_place_Info._cont = ASN1Dict([ (u'name', _ID2S_Seq_annot_place_Info_name), (u'bioseqs', _ID2S_Seq_annot_place_Info_bioseqs), (u'bioseq-sets', _ID2S_Seq_annot_place_Info_bioseq_sets), ]) ID2S_Seq_annot_place_Info._ext = None #-----< ID2S-Seq-feat-Ids-Info >-----# ID2S_Seq_feat_Ids_Info = SEQ(name=u'ID2S-Seq-feat-Ids-Info', mode=MODE_TYPE) _ID2S_Seq_feat_Ids_Info_feat_types = SET_OF(name=u'feat-types', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Seq_feat_Ids_Info_feat_types__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Feat-type-Info'))) _ID2S_Seq_feat_Ids_Info_feat_types._cont = __ID2S_Seq_feat_Ids_Info_feat_types__item_ _ID2S_Seq_feat_Ids_Info_xref_types = SET_OF(name=u'xref-types', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Seq_feat_Ids_Info_xref_types__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Feat-type-Info'))) _ID2S_Seq_feat_Ids_Info_xref_types._cont = __ID2S_Seq_feat_Ids_Info_xref_types__item_ _ID2S_Seq_feat_Ids_Info_local_ids = SET_OF(name=u'local-ids', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Seq_feat_Ids_Info_local_ids__item_ = INT(name='_item_', mode=MODE_TYPE) _ID2S_Seq_feat_Ids_Info_local_ids._cont = __ID2S_Seq_feat_Ids_Info_local_ids__item_ _ID2S_Seq_feat_Ids_Info_local_str_ids = SET_OF(name=u'local-str-ids', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Seq_feat_Ids_Info_local_str_ids__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _ID2S_Seq_feat_Ids_Info_local_str_ids._cont = __ID2S_Seq_feat_Ids_Info_local_str_ids__item_ ID2S_Seq_feat_Ids_Info._cont = ASN1Dict([ (u'feat-types', _ID2S_Seq_feat_Ids_Info_feat_types), (u'xref-types', _ID2S_Seq_feat_Ids_Info_xref_types), (u'local-ids', _ID2S_Seq_feat_Ids_Info_local_ids), (u'local-str-ids', _ID2S_Seq_feat_Ids_Info_local_str_ids), ]) ID2S_Seq_feat_Ids_Info._ext = None #-----< ID2S-Feat-type-Info >-----# ID2S_Feat_type_Info = SEQ(name=u'ID2S-Feat-type-Info', mode=MODE_TYPE) _ID2S_Feat_type_Info_type = INT(name=u'type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Feat_type_Info_subtypes = SET_OF(name=u'subtypes', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Feat_type_Info_subtypes__item_ = INT(name='_item_', mode=MODE_TYPE) _ID2S_Feat_type_Info_subtypes._cont = __ID2S_Feat_type_Info_subtypes__item_ ID2S_Feat_type_Info._cont = ASN1Dict([ (u'type', _ID2S_Feat_type_Info_type), (u'subtypes', _ID2S_Feat_type_Info_subtypes), ]) ID2S_Feat_type_Info._ext = None #-----< ID2S-Seq-assembly-Info >-----# ID2S_Seq_assembly_Info = SEQ(name=u'ID2S-Seq-assembly-Info', mode=MODE_TYPE) _ID2S_Seq_assembly_Info_bioseqs = SET_OF(name=u'bioseqs', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-Ids'))) ID2S_Seq_assembly_Info._cont = ASN1Dict([ (u'bioseqs', _ID2S_Seq_assembly_Info_bioseqs), ]) ID2S_Seq_assembly_Info._ext = None #-----< ID2S-Seq-map-Info >-----# ID2S_Seq_map_Info = CHOICE(name=u'ID2S-Seq-map-Info', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-loc'))) #-----< ID2S-Seq-data-Info >-----# ID2S_Seq_data_Info = CHOICE(name=u'ID2S-Seq-data-Info', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-loc'))) #-----< ID2S-Bioseq-place-Info >-----# ID2S_Bioseq_place_Info = SEQ(name=u'ID2S-Bioseq-place-Info', mode=MODE_TYPE) _ID2S_Bioseq_place_Info_bioseq_set = INT(name=u'bioseq-set', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Bioseq_place_Info_seq_ids = SET_OF(name=u'seq-ids', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Bioseq-Ids'))) ID2S_Bioseq_place_Info._cont = ASN1Dict([ (u'bioseq-set', _ID2S_Bioseq_place_Info_bioseq_set), (u'seq-ids', _ID2S_Bioseq_place_Info_seq_ids), ]) ID2S_Bioseq_place_Info._ext = None #-----< ID2S-Chunk >-----# ID2S_Chunk = SEQ(name=u'ID2S-Chunk', mode=MODE_TYPE) _ID2S_Chunk_data = SET_OF(name=u'data', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Chunk_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Chunk-Data'))) _ID2S_Chunk_data._cont = __ID2S_Chunk_data__item_ ID2S_Chunk._cont = ASN1Dict([ (u'data', _ID2S_Chunk_data), ]) ID2S_Chunk._ext = None #-----< ID2S-Chunk-Data >-----# ID2S_Chunk_Data = SEQ(name=u'ID2S-Chunk-Data', mode=MODE_TYPE) _ID2S_Chunk_Data_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __ID2S_Chunk_Data_id_bioseq_set = INT(name=u'bioseq-set', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Chunk_Data_id_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Chunk_Data_id_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2S_Chunk_Data_id._cont = ASN1Dict([ (u'bioseq-set', __ID2S_Chunk_Data_id_bioseq_set), (u'gi', __ID2S_Chunk_Data_id_gi), (u'seq-id', __ID2S_Chunk_Data_id_seq_id), ]) _ID2S_Chunk_Data_id._ext = None _ID2S_Chunk_Data_descr = SET_OF(name=u'descr', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Sequence', 'Seq-descr')), opt=True) _ID2S_Chunk_Data_annots = SET_OF(name=u'annots', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Chunk_Data_annots__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) _ID2S_Chunk_Data_annots._cont = __ID2S_Chunk_Data_annots__item_ _ID2S_Chunk_Data_assembly = SET_OF(name=u'assembly', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Chunk_Data_assembly__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqalign', 'Seq-align'))) _ID2S_Chunk_Data_assembly._cont = __ID2S_Chunk_Data_assembly__item_ _ID2S_Chunk_Data_seq_map = SEQ_OF(name=u'seq-map', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Chunk_Data_seq_map__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Sequence-Piece'))) _ID2S_Chunk_Data_seq_map._cont = __ID2S_Chunk_Data_seq_map__item_ _ID2S_Chunk_Data_seq_data = SEQ_OF(name=u'seq-data', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Chunk_Data_seq_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Sequence-Piece'))) _ID2S_Chunk_Data_seq_data._cont = __ID2S_Chunk_Data_seq_data__item_ _ID2S_Chunk_Data_bioseqs = SET_OF(name=u'bioseqs', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __ID2S_Chunk_Data_bioseqs__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Bioseq'))) _ID2S_Chunk_Data_bioseqs._cont = __ID2S_Chunk_Data_bioseqs__item_ ID2S_Chunk_Data._cont = ASN1Dict([ (u'id', _ID2S_Chunk_Data_id), (u'descr', _ID2S_Chunk_Data_descr), (u'annots', _ID2S_Chunk_Data_annots), (u'assembly', _ID2S_Chunk_Data_assembly), (u'seq-map', _ID2S_Chunk_Data_seq_map), (u'seq-data', _ID2S_Chunk_Data_seq_data), (u'bioseqs', _ID2S_Chunk_Data_bioseqs), ]) ID2S_Chunk_Data._ext = None #-----< ID2S-Sequence-Piece >-----# ID2S_Sequence_Piece = SEQ(name=u'ID2S-Sequence-Piece', mode=MODE_TYPE) _ID2S_Sequence_Piece_start = INT(name=u'start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Sequence_Piece_data = SEQ_OF(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Sequence_Piece_data__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-literal'))) _ID2S_Sequence_Piece_data._cont = __ID2S_Sequence_Piece_data__item_ ID2S_Sequence_Piece._cont = ASN1Dict([ (u'start', _ID2S_Sequence_Piece_start), (u'data', _ID2S_Sequence_Piece_data), ]) ID2S_Sequence_Piece._ext = None #-----< ID2S-Chunk-Id >-----# ID2S_Chunk_Id = INT(name=u'ID2S-Chunk-Id', mode=MODE_TYPE) #-----< ID2S-Bioseq-set-Ids >-----# ID2S_Bioseq_set_Ids = SET_OF(name=u'ID2S-Bioseq-set-Ids', mode=MODE_TYPE) _ID2S_Bioseq_set_Ids__item_ = INT(name='_item_', mode=MODE_TYPE) ID2S_Bioseq_set_Ids._cont = _ID2S_Bioseq_set_Ids__item_ #-----< ID2S-Bioseq-Ids >-----# ID2S_Bioseq_Ids = SET_OF(name=u'ID2S-Bioseq-Ids', mode=MODE_TYPE) _ID2S_Bioseq_Ids__item_ = CHOICE(name='_item_', mode=MODE_TYPE) __ID2S_Bioseq_Ids__item__gi = INT(name=u'gi', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Bioseq_Ids__item__seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) __ID2S_Bioseq_Ids__item__gi_range = SEQ(name=u'gi-range', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Gi-Range'))) _ID2S_Bioseq_Ids__item_._cont = ASN1Dict([ (u'gi', __ID2S_Bioseq_Ids__item__gi), (u'seq-id', __ID2S_Bioseq_Ids__item__seq_id), (u'gi-range', __ID2S_Bioseq_Ids__item__gi_range), ]) _ID2S_Bioseq_Ids__item_._ext = None ID2S_Bioseq_Ids._cont = _ID2S_Bioseq_Ids__item_ #-----< ID2S-Gi-Range >-----# ID2S_Gi_Range = SEQ(name=u'ID2S-Gi-Range', mode=MODE_TYPE) _ID2S_Gi_Range_start = INT(name=u'start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Gi_Range_count = INT(name=u'count', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) ID2S_Gi_Range._cont = ASN1Dict([ (u'start', _ID2S_Gi_Range_start), (u'count', _ID2S_Gi_Range_count), ]) ID2S_Gi_Range._ext = None #-----< ID2S-Seq-loc >-----# ID2S_Seq_loc = CHOICE(name=u'ID2S-Seq-loc', mode=MODE_TYPE) _ID2S_Seq_loc_whole_gi = INT(name=u'whole-gi', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Seq_loc_whole_seq_id = CHOICE(name=u'whole-seq-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2S_Seq_loc_whole_gi_range = SEQ(name=u'whole-gi-range', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Gi-Range'))) _ID2S_Seq_loc_gi_interval = SEQ(name=u'gi-interval', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Gi-Interval'))) _ID2S_Seq_loc_seq_id_interval = SEQ(name=u'seq-id-interval', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-id-Interval'))) _ID2S_Seq_loc_gi_ints = SEQ(name=u'gi-ints', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Gi-Ints'))) _ID2S_Seq_loc_seq_id_ints = SEQ(name=u'seq-id-ints', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-id-Ints'))) _ID2S_Seq_loc_loc_set = SET_OF(name=u'loc-set', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Seq_loc_loc_set__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Seq-loc'))) _ID2S_Seq_loc_loc_set._cont = __ID2S_Seq_loc_loc_set__item_ ID2S_Seq_loc._cont = ASN1Dict([ (u'whole-gi', _ID2S_Seq_loc_whole_gi), (u'whole-seq-id', _ID2S_Seq_loc_whole_seq_id), (u'whole-gi-range', _ID2S_Seq_loc_whole_gi_range), (u'gi-interval', _ID2S_Seq_loc_gi_interval), (u'seq-id-interval', _ID2S_Seq_loc_seq_id_interval), (u'gi-ints', _ID2S_Seq_loc_gi_ints), (u'seq-id-ints', _ID2S_Seq_loc_seq_id_ints), (u'loc-set', _ID2S_Seq_loc_loc_set), ]) ID2S_Seq_loc._ext = None #-----< ID2S-Gi-Interval >-----# ID2S_Gi_Interval = SEQ(name=u'ID2S-Gi-Interval', mode=MODE_TYPE) _ID2S_Gi_Interval_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Gi_Interval_start = INT(name=u'start', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Gi_Interval_length = INT(name=u'length', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) ID2S_Gi_Interval._cont = ASN1Dict([ (u'gi', _ID2S_Gi_Interval_gi), (u'start', _ID2S_Gi_Interval_start), (u'length', _ID2S_Gi_Interval_length), ]) ID2S_Gi_Interval._ext = None #-----< ID2S-Seq-id-Interval >-----# ID2S_Seq_id_Interval = SEQ(name=u'ID2S-Seq-id-Interval', mode=MODE_TYPE) _ID2S_Seq_id_Interval_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2S_Seq_id_Interval_start = INT(name=u'start', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Seq_id_Interval_length = INT(name=u'length', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) ID2S_Seq_id_Interval._cont = ASN1Dict([ (u'seq-id', _ID2S_Seq_id_Interval_seq_id), (u'start', _ID2S_Seq_id_Interval_start), (u'length', _ID2S_Seq_id_Interval_length), ]) ID2S_Seq_id_Interval._ext = None #-----< ID2S-Interval >-----# ID2S_Interval = SEQ(name=u'ID2S-Interval', mode=MODE_TYPE) _ID2S_Interval_start = INT(name=u'start', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Interval_length = INT(name=u'length', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=1) ID2S_Interval._cont = ASN1Dict([ (u'start', _ID2S_Interval_start), (u'length', _ID2S_Interval_length), ]) ID2S_Interval._ext = None #-----< ID2S-Gi-Ints >-----# ID2S_Gi_Ints = SEQ(name=u'ID2S-Gi-Ints', mode=MODE_TYPE) _ID2S_Gi_Ints_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _ID2S_Gi_Ints_ints = SET_OF(name=u'ints', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Gi_Ints_ints__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Interval'))) _ID2S_Gi_Ints_ints._cont = __ID2S_Gi_Ints_ints__item_ ID2S_Gi_Ints._cont = ASN1Dict([ (u'gi', _ID2S_Gi_Ints_gi), (u'ints', _ID2S_Gi_Ints_ints), ]) ID2S_Gi_Ints._ext = None #-----< ID2S-Seq-id-Ints >-----# ID2S_Seq_id_Ints = SEQ(name=u'ID2S-Seq-id-Ints', mode=MODE_TYPE) _ID2S_Seq_id_Ints_seq_id = CHOICE(name=u'seq-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _ID2S_Seq_id_Ints_ints = SET_OF(name=u'ints', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __ID2S_Seq_id_Ints_ints__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seq-split', 'ID2S-Interval'))) _ID2S_Seq_id_Ints_ints._cont = __ID2S_Seq_id_Ints_ints__item_ ID2S_Seq_id_Ints._cont = ASN1Dict([ (u'seq-id', _ID2S_Seq_id_Ints_seq_id), (u'ints', _ID2S_Seq_id_Ints_ints), ]) ID2S_Seq_id_Ints._ext = None _all_ = [ __ID2S_Split_Info_bioseqs_info__item_, _ID2S_Split_Info_bioseqs_info, __ID2S_Split_Info_chunks__item_, _ID2S_Split_Info_chunks, _ID2S_Split_Info_skeleton, ID2S_Split_Info, _ID2S_Bioseqs_Info_info, _ID2S_Bioseqs_Info_bioseqs, ID2S_Bioseqs_Info, _ID2S_Bioseq_Info_gap_count, _ID2S_Bioseq_Info_seq_map_has_ref, ID2S_Bioseq_Info, _ID2S_Chunk_Info_id, __ID2S_Chunk_Info_content__item_, _ID2S_Chunk_Info_content, ID2S_Chunk_Info, _ID2S_Chunk_Content_seq_descr, _ID2S_Chunk_Content_seq_annot, _ID2S_Chunk_Content_seq_assembly, _ID2S_Chunk_Content_seq_map, _ID2S_Chunk_Content_seq_data, _ID2S_Chunk_Content_seq_annot_place, __ID2S_Chunk_Content_bioseq_place__item_, _ID2S_Chunk_Content_bioseq_place, __ID2S_Chunk_Content_feat_ids__item_, _ID2S_Chunk_Content_feat_ids, ID2S_Chunk_Content, _ID2S_Seq_descr_Info_type_mask, _ID2S_Seq_descr_Info_bioseqs, _ID2S_Seq_descr_Info_bioseq_sets, ID2S_Seq_descr_Info, _ID2S_Seq_annot_Info_name, _ID2S_Seq_annot_Info_align, _ID2S_Seq_annot_Info_graph, __ID2S_Seq_annot_Info_feat__item_, _ID2S_Seq_annot_Info_feat, _ID2S_Seq_annot_Info_seq_loc, ID2S_Seq_annot_Info, _ID2S_Seq_annot_place_Info_name, _ID2S_Seq_annot_place_Info_bioseqs, _ID2S_Seq_annot_place_Info_bioseq_sets, ID2S_Seq_annot_place_Info, __ID2S_Seq_feat_Ids_Info_feat_types__item_, _ID2S_Seq_feat_Ids_Info_feat_types, __ID2S_Seq_feat_Ids_Info_xref_types__item_, _ID2S_Seq_feat_Ids_Info_xref_types, __ID2S_Seq_feat_Ids_Info_local_ids__item_, _ID2S_Seq_feat_Ids_Info_local_ids, __ID2S_Seq_feat_Ids_Info_local_str_ids__item_, _ID2S_Seq_feat_Ids_Info_local_str_ids, ID2S_Seq_feat_Ids_Info, _ID2S_Feat_type_Info_type, __ID2S_Feat_type_Info_subtypes__item_, _ID2S_Feat_type_Info_subtypes, ID2S_Feat_type_Info, _ID2S_Seq_assembly_Info_bioseqs, ID2S_Seq_assembly_Info, ID2S_Seq_map_Info, ID2S_Seq_data_Info, _ID2S_Bioseq_place_Info_bioseq_set, _ID2S_Bioseq_place_Info_seq_ids, ID2S_Bioseq_place_Info, __ID2S_Chunk_data__item_, _ID2S_Chunk_data, ID2S_Chunk, __ID2S_Chunk_Data_id_bioseq_set, __ID2S_Chunk_Data_id_gi, __ID2S_Chunk_Data_id_seq_id, _ID2S_Chunk_Data_id, _ID2S_Chunk_Data_descr, __ID2S_Chunk_Data_annots__item_, _ID2S_Chunk_Data_annots, __ID2S_Chunk_Data_assembly__item_, _ID2S_Chunk_Data_assembly, __ID2S_Chunk_Data_seq_map__item_, _ID2S_Chunk_Data_seq_map, __ID2S_Chunk_Data_seq_data__item_, _ID2S_Chunk_Data_seq_data, __ID2S_Chunk_Data_bioseqs__item_, _ID2S_Chunk_Data_bioseqs, ID2S_Chunk_Data, _ID2S_Sequence_Piece_start, __ID2S_Sequence_Piece_data__item_, _ID2S_Sequence_Piece_data, ID2S_Sequence_Piece, ID2S_Chunk_Id, _ID2S_Bioseq_set_Ids__item_, ID2S_Bioseq_set_Ids, __ID2S_Bioseq_Ids__item__gi, __ID2S_Bioseq_Ids__item__seq_id, __ID2S_Bioseq_Ids__item__gi_range, _ID2S_Bioseq_Ids__item_, ID2S_Bioseq_Ids, _ID2S_Gi_Range_start, _ID2S_Gi_Range_count, ID2S_Gi_Range, _ID2S_Seq_loc_whole_gi, _ID2S_Seq_loc_whole_seq_id, _ID2S_Seq_loc_whole_gi_range, _ID2S_Seq_loc_gi_interval, _ID2S_Seq_loc_seq_id_interval, _ID2S_Seq_loc_gi_ints, _ID2S_Seq_loc_seq_id_ints, __ID2S_Seq_loc_loc_set__item_, _ID2S_Seq_loc_loc_set, ID2S_Seq_loc, _ID2S_Gi_Interval_gi, _ID2S_Gi_Interval_start, _ID2S_Gi_Interval_length, ID2S_Gi_Interval, _ID2S_Seq_id_Interval_seq_id, _ID2S_Seq_id_Interval_start, _ID2S_Seq_id_Interval_length, ID2S_Seq_id_Interval, _ID2S_Interval_start, _ID2S_Interval_length, ID2S_Interval, _ID2S_Gi_Ints_gi, __ID2S_Gi_Ints_ints__item_, _ID2S_Gi_Ints_ints, ID2S_Gi_Ints, _ID2S_Seq_id_Ints_seq_id, __ID2S_Seq_id_Ints_ints__item_, _ID2S_Seq_id_Ints_ints, ID2S_Seq_id_Ints, ] class NCBI_SeqTable: _name_ = u'NCBI-SeqTable' _oid_ = [] _obj_ = [ u'SeqTable-column-info', u'CommonString-table', u'CommonBytes-table', u'SeqTable-multi-data', u'SeqTable-single-data', u'SeqTable-sparse-index', u'SeqTable-column', u'Seq-table', ] _type_ = [ u'SeqTable-column-info', u'CommonString-table', u'CommonBytes-table', u'SeqTable-multi-data', u'SeqTable-single-data', u'SeqTable-sparse-index', u'SeqTable-column', u'Seq-table', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< SeqTable-column-info >-----# SeqTable_column_info = SEQ(name=u'SeqTable-column-info', mode=MODE_TYPE) _SeqTable_column_info_title = STR_VIS(name=u'title', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _SeqTable_column_info_field_id = INT(name=u'field-id', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _SeqTable_column_info_field_id._cont = ASN1Dict([(u'location', 0), (u'location-id', 1), (u'location-gi', 2), (u'location-from', 3), (u'location-to', 4), (u'location-strand', 5), (u'location-fuzz-from-lim', 6), (u'location-fuzz-to-lim', 7), (u'product', 10), (u'product-id', 11), (u'product-gi', 12), (u'product-from', 13), (u'product-to', 14), (u'product-strand', 15), (u'product-fuzz-from-lim', 16), (u'product-fuzz-to-lim', 17), (u'id-local', 20), (u'xref-id-local', 21), (u'partial', 22), (u'comment', 23), (u'title', 24), (u'ext', 25), (u'qual', 26), (u'dbxref', 27), (u'data-imp-key', 30), (u'data-region', 31), (u'data-cdregion-frame', 32), (u'ext-type', 40), (u'qual-qual', 41), (u'qual-val', 42), (u'dbxref-db', 43), (u'dbxref-tag', 44)]) _SeqTable_column_info_field_name = STR_VIS(name=u'field-name', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) SeqTable_column_info._cont = ASN1Dict([ (u'title', _SeqTable_column_info_title), (u'field-id', _SeqTable_column_info_field_id), (u'field-name', _SeqTable_column_info_field_name), ]) SeqTable_column_info._ext = None #-----< CommonString-table >-----# CommonString_table = SEQ(name=u'CommonString-table', mode=MODE_TYPE) _CommonString_table_strings = SEQ_OF(name=u'strings', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __CommonString_table_strings__item_ = STR_UTF8(name='_item_', mode=MODE_TYPE) _CommonString_table_strings._cont = __CommonString_table_strings__item_ _CommonString_table_indexes = SEQ_OF(name=u'indexes', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __CommonString_table_indexes__item_ = INT(name='_item_', mode=MODE_TYPE) _CommonString_table_indexes._cont = __CommonString_table_indexes__item_ CommonString_table._cont = ASN1Dict([ (u'strings', _CommonString_table_strings), (u'indexes', _CommonString_table_indexes), ]) CommonString_table._ext = None #-----< CommonBytes-table >-----# CommonBytes_table = SEQ(name=u'CommonBytes-table', mode=MODE_TYPE) _CommonBytes_table_bytes = SEQ_OF(name=u'bytes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __CommonBytes_table_bytes__item_ = OCT_STR(name='_item_', mode=MODE_TYPE) _CommonBytes_table_bytes._cont = __CommonBytes_table_bytes__item_ _CommonBytes_table_indexes = SEQ_OF(name=u'indexes', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __CommonBytes_table_indexes__item_ = INT(name='_item_', mode=MODE_TYPE) _CommonBytes_table_indexes._cont = __CommonBytes_table_indexes__item_ CommonBytes_table._cont = ASN1Dict([ (u'bytes', _CommonBytes_table_bytes), (u'indexes', _CommonBytes_table_indexes), ]) CommonBytes_table._ext = None #-----< SeqTable-multi-data >-----# SeqTable_multi_data = CHOICE(name=u'SeqTable-multi-data', mode=MODE_TYPE) _SeqTable_multi_data_int = SEQ_OF(name=u'int', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_int__item_ = INT(name='_item_', mode=MODE_TYPE) _SeqTable_multi_data_int._cont = __SeqTable_multi_data_int__item_ _SeqTable_multi_data_real = SEQ_OF(name=u'real', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_real__item_ = REAL(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('_IMPL_', 'REAL'))) _SeqTable_multi_data_real._cont = __SeqTable_multi_data_real__item_ _SeqTable_multi_data_string = SEQ_OF(name=u'string', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_string__item_ = STR_UTF8(name='_item_', mode=MODE_TYPE) _SeqTable_multi_data_string._cont = __SeqTable_multi_data_string__item_ _SeqTable_multi_data_bytes = SEQ_OF(name=u'bytes', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_bytes__item_ = OCT_STR(name='_item_', mode=MODE_TYPE) _SeqTable_multi_data_bytes._cont = __SeqTable_multi_data_bytes__item_ _SeqTable_multi_data_common_string = SEQ(name=u'common-string', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'CommonString-table'))) _SeqTable_multi_data_common_bytes = SEQ(name=u'common-bytes', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'CommonBytes-table'))) _SeqTable_multi_data_bit = OCT_STR(name=u'bit', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqTable_multi_data_loc = SEQ_OF(name=u'loc', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_loc__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _SeqTable_multi_data_loc._cont = __SeqTable_multi_data_loc__item_ _SeqTable_multi_data_id = SEQ_OF(name=u'id', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_id__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _SeqTable_multi_data_id._cont = __SeqTable_multi_data_id__item_ _SeqTable_multi_data_interval = SEQ_OF(name=u'interval', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_multi_data_interval__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval'))) _SeqTable_multi_data_interval._cont = __SeqTable_multi_data_interval__item_ SeqTable_multi_data._cont = ASN1Dict([ (u'int', _SeqTable_multi_data_int), (u'real', _SeqTable_multi_data_real), (u'string', _SeqTable_multi_data_string), (u'bytes', _SeqTable_multi_data_bytes), (u'common-string', _SeqTable_multi_data_common_string), (u'common-bytes', _SeqTable_multi_data_common_bytes), (u'bit', _SeqTable_multi_data_bit), (u'loc', _SeqTable_multi_data_loc), (u'id', _SeqTable_multi_data_id), (u'interval', _SeqTable_multi_data_interval), ]) SeqTable_multi_data._ext = None #-----< SeqTable-single-data >-----# SeqTable_single_data = CHOICE(name=u'SeqTable-single-data', mode=MODE_TYPE) _SeqTable_single_data_int = INT(name=u'int', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqTable_single_data_real = REAL(name=u'real', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('_IMPL_', 'REAL'))) _SeqTable_single_data_string = STR_UTF8(name=u'string', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqTable_single_data_bytes = OCT_STR(name=u'bytes', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqTable_single_data_bit = BOOL(name=u'bit', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _SeqTable_single_data_loc = CHOICE(name=u'loc', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-loc'))) _SeqTable_single_data_id = CHOICE(name=u'id', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) _SeqTable_single_data_interval = SEQ(name=u'interval', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-interval'))) SeqTable_single_data._cont = ASN1Dict([ (u'int', _SeqTable_single_data_int), (u'real', _SeqTable_single_data_real), (u'string', _SeqTable_single_data_string), (u'bytes', _SeqTable_single_data_bytes), (u'bit', _SeqTable_single_data_bit), (u'loc', _SeqTable_single_data_loc), (u'id', _SeqTable_single_data_id), (u'interval', _SeqTable_single_data_interval), ]) SeqTable_single_data._ext = None #-----< SeqTable-sparse-index >-----# SeqTable_sparse_index = CHOICE(name=u'SeqTable-sparse-index', mode=MODE_TYPE) _SeqTable_sparse_index_indexes = SEQ_OF(name=u'indexes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __SeqTable_sparse_index_indexes__item_ = INT(name='_item_', mode=MODE_TYPE) _SeqTable_sparse_index_indexes._cont = __SeqTable_sparse_index_indexes__item_ _SeqTable_sparse_index_bit_set = OCT_STR(name=u'bit-set', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) SeqTable_sparse_index._cont = ASN1Dict([ (u'indexes', _SeqTable_sparse_index_indexes), (u'bit-set', _SeqTable_sparse_index_bit_set), ]) SeqTable_sparse_index._ext = None #-----< SeqTable-column >-----# SeqTable_column = SEQ(name=u'SeqTable-column', mode=MODE_TYPE) _SeqTable_column_header = SEQ(name=u'header', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'SeqTable-column-info'))) _SeqTable_column_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'SeqTable-multi-data')), opt=True) _SeqTable_column_sparse = CHOICE(name=u'sparse', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'SeqTable-sparse-index')), opt=True) _SeqTable_column_default = CHOICE(name=u'default', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'SeqTable-single-data')), opt=True) _SeqTable_column_sparse_other = CHOICE(name=u'sparse-other', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-SeqTable', 'SeqTable-single-data')), opt=True) SeqTable_column._cont = ASN1Dict([ (u'header', _SeqTable_column_header), (u'data', _SeqTable_column_data), (u'sparse', _SeqTable_column_sparse), (u'default', _SeqTable_column_default), (u'sparse-other', _SeqTable_column_sparse_other), ]) SeqTable_column._ext = None #-----< Seq-table >-----# Seq_table = SEQ(name=u'Seq-table', mode=MODE_TYPE) _Seq_table_feat_type = INT(name=u'feat-type', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_table_feat_subtype = INT(name=u'feat-subtype', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Seq_table_num_rows = INT(name=u'num-rows', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _Seq_table_columns = SEQ_OF(name=u'columns', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) __Seq_table_columns__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-SeqTable', 'SeqTable-column'))) _Seq_table_columns._cont = __Seq_table_columns__item_ Seq_table._cont = ASN1Dict([ (u'feat-type', _Seq_table_feat_type), (u'feat-subtype', _Seq_table_feat_subtype), (u'num-rows', _Seq_table_num_rows), (u'columns', _Seq_table_columns), ]) Seq_table._ext = None _all_ = [ _SeqTable_column_info_title, _SeqTable_column_info_field_id, _SeqTable_column_info_field_name, SeqTable_column_info, __CommonString_table_strings__item_, _CommonString_table_strings, __CommonString_table_indexes__item_, _CommonString_table_indexes, CommonString_table, __CommonBytes_table_bytes__item_, _CommonBytes_table_bytes, __CommonBytes_table_indexes__item_, _CommonBytes_table_indexes, CommonBytes_table, __SeqTable_multi_data_int__item_, _SeqTable_multi_data_int, __SeqTable_multi_data_real__item_, _SeqTable_multi_data_real, __SeqTable_multi_data_string__item_, _SeqTable_multi_data_string, __SeqTable_multi_data_bytes__item_, _SeqTable_multi_data_bytes, _SeqTable_multi_data_common_string, _SeqTable_multi_data_common_bytes, _SeqTable_multi_data_bit, __SeqTable_multi_data_loc__item_, _SeqTable_multi_data_loc, __SeqTable_multi_data_id__item_, _SeqTable_multi_data_id, __SeqTable_multi_data_interval__item_, _SeqTable_multi_data_interval, SeqTable_multi_data, _SeqTable_single_data_int, _SeqTable_single_data_real, _SeqTable_single_data_string, _SeqTable_single_data_bytes, _SeqTable_single_data_bit, _SeqTable_single_data_loc, _SeqTable_single_data_id, _SeqTable_single_data_interval, SeqTable_single_data, __SeqTable_sparse_index_indexes__item_, _SeqTable_sparse_index_indexes, _SeqTable_sparse_index_bit_set, SeqTable_sparse_index, _SeqTable_column_header, _SeqTable_column_data, _SeqTable_column_sparse, _SeqTable_column_default, _SeqTable_column_sparse_other, SeqTable_column, _Seq_table_feat_type, _Seq_table_feat_subtype, _Seq_table_num_rows, __Seq_table_columns__item_, _Seq_table_columns, Seq_table, ] class NCBI_Submit: _name_ = u'NCBI-Submit' _oid_ = [] _obj_ = [ u'Seq-submit', u'Submit-block', u'Contact-info', ] _type_ = [ u'Seq-submit', u'Submit-block', u'Contact-info', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< Seq-submit >-----# Seq_submit = SEQ(name=u'Seq-submit', mode=MODE_TYPE) _Seq_submit_sub = SEQ(name=u'sub', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Submit', 'Submit-block'))) _Seq_submit_data = CHOICE(name=u'data', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __Seq_submit_data_entrys = SET_OF(name=u'entrys', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_submit_data_entrys__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqset', 'Seq-entry'))) __Seq_submit_data_entrys._cont = ___Seq_submit_data_entrys__item_ __Seq_submit_data_annots = SET_OF(name=u'annots', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_submit_data_annots__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Sequence', 'Seq-annot'))) __Seq_submit_data_annots._cont = ___Seq_submit_data_annots__item_ __Seq_submit_data_delete = SET_OF(name=u'delete', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) ___Seq_submit_data_delete__item_ = CHOICE(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-Seqloc', 'Seq-id'))) __Seq_submit_data_delete._cont = ___Seq_submit_data_delete__item_ _Seq_submit_data._cont = ASN1Dict([ (u'entrys', __Seq_submit_data_entrys), (u'annots', __Seq_submit_data_annots), (u'delete', __Seq_submit_data_delete), ]) _Seq_submit_data._ext = None Seq_submit._cont = ASN1Dict([ (u'sub', _Seq_submit_sub), (u'data', _Seq_submit_data), ]) Seq_submit._ext = None #-----< Submit-block >-----# Submit_block = SEQ(name=u'Submit-block', mode=MODE_TYPE) _Submit_block_contact = SEQ(name=u'contact', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Submit', 'Contact-info'))) _Submit_block_cit = SEQ(name=u'cit', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Cit-sub'))) _Submit_block_hup = BOOL(name=u'hup', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), default=False) _Submit_block_reldate = CHOICE(name=u'reldate', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Date')), opt=True) _Submit_block_subtype = INT(name=u'subtype', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Submit_block_subtype._cont = ASN1Dict([(u'new', 1), (u'update', 2), (u'revision', 3), (u'other', 255)]) _Submit_block_tool = STR_VIS(name=u'tool', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Submit_block_user_tag = STR_VIS(name=u'user-tag', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Submit_block_comment = STR_VIS(name=u'comment', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) Submit_block._cont = ASN1Dict([ (u'contact', _Submit_block_contact), (u'cit', _Submit_block_cit), (u'hup', _Submit_block_hup), (u'reldate', _Submit_block_reldate), (u'subtype', _Submit_block_subtype), (u'tool', _Submit_block_tool), (u'user-tag', _Submit_block_user_tag), (u'comment', _Submit_block_comment), ]) Submit_block._ext = None #-----< Contact-info >-----# Contact_info = SEQ(name=u'Contact-info', mode=MODE_TYPE) _Contact_info_name = STR_VIS(name=u'name', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_address = SEQ_OF(name=u'address', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) __Contact_info_address__item_ = STR_VIS(name='_item_', mode=MODE_TYPE) _Contact_info_address._cont = __Contact_info_address__item_ _Contact_info_phone = STR_VIS(name=u'phone', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_fax = STR_VIS(name=u'fax', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_email = STR_VIS(name=u'email', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_telex = STR_VIS(name=u'telex', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_owner_id = CHOICE(name=u'owner-id', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_EXPLICIT), typeref=ASN1RefType(('NCBI-General', 'Object-id')), opt=True) _Contact_info_password = OCT_STR(name=u'password', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_last_name = STR_VIS(name=u'last-name', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_first_name = STR_VIS(name=u'first-name', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_middle_initial = STR_VIS(name=u'middle-initial', mode=MODE_TYPE, tag=(10, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _Contact_info_contact = SEQ(name=u'contact', mode=MODE_TYPE, tag=(11, TAG_CONTEXT_SPEC, TAG_IMPLICIT), typeref=ASN1RefType(('NCBI-Biblio', 'Author')), opt=True) Contact_info._cont = ASN1Dict([ (u'name', _Contact_info_name), (u'address', _Contact_info_address), (u'phone', _Contact_info_phone), (u'fax', _Contact_info_fax), (u'email', _Contact_info_email), (u'telex', _Contact_info_telex), (u'owner-id', _Contact_info_owner_id), (u'password', _Contact_info_password), (u'last-name', _Contact_info_last_name), (u'first-name', _Contact_info_first_name), (u'middle-initial', _Contact_info_middle_initial), (u'contact', _Contact_info_contact), ]) Contact_info._ext = None _all_ = [ _Seq_submit_sub, ___Seq_submit_data_entrys__item_, __Seq_submit_data_entrys, ___Seq_submit_data_annots__item_, __Seq_submit_data_annots, ___Seq_submit_data_delete__item_, __Seq_submit_data_delete, _Seq_submit_data, Seq_submit, _Submit_block_contact, _Submit_block_cit, _Submit_block_hup, _Submit_block_reldate, _Submit_block_subtype, _Submit_block_tool, _Submit_block_user_tag, _Submit_block_comment, Submit_block, _Contact_info_name, __Contact_info_address__item_, _Contact_info_address, _Contact_info_phone, _Contact_info_fax, _Contact_info_email, _Contact_info_telex, _Contact_info_owner_id, _Contact_info_password, _Contact_info_last_name, _Contact_info_first_name, _Contact_info_middle_initial, _Contact_info_contact, Contact_info, ] class NCBI_TSeq: _name_ = u'NCBI-TSeq' _oid_ = [] _obj_ = [ u'TSeq', u'TSeqSet', ] _type_ = [ u'TSeq', u'TSeqSet', ] _set_ = [ ] _val_ = [ ] _class_ = [ ] _param_ = [ ] #-----< TSeq >-----# TSeq = SEQ(name=u'TSeq', mode=MODE_TYPE) _TSeq_seqtype = ENUM(name=u'seqtype', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _TSeq_seqtype._cont = ASN1Dict([(u'nucleotide', 1), (u'protein', 2)]) _TSeq_seqtype._ext = None _TSeq_gi = INT(name=u'gi', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TSeq_accver = STR_VIS(name=u'accver', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TSeq_sid = STR_VIS(name=u'sid', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TSeq_local = STR_VIS(name=u'local', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TSeq_taxid = INT(name=u'taxid', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TSeq_orgname = STR_VIS(name=u'orgname', mode=MODE_TYPE, tag=(6, TAG_CONTEXT_SPEC, TAG_IMPLICIT), opt=True) _TSeq_defline = STR_VIS(name=u'defline', mode=MODE_TYPE, tag=(7, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _TSeq_length = INT(name=u'length', mode=MODE_TYPE, tag=(8, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) _TSeq_sequence = STR_VIS(name=u'sequence', mode=MODE_TYPE, tag=(9, TAG_CONTEXT_SPEC, TAG_IMPLICIT)) TSeq._cont = ASN1Dict([ (u'seqtype', _TSeq_seqtype), (u'gi', _TSeq_gi), (u'accver', _TSeq_accver), (u'sid', _TSeq_sid), (u'local', _TSeq_local), (u'taxid', _TSeq_taxid), (u'orgname', _TSeq_orgname), (u'defline', _TSeq_defline), (u'length', _TSeq_length), (u'sequence', _TSeq_sequence), ]) TSeq._ext = None #-----< TSeqSet >-----# TSeqSet = SEQ_OF(name=u'TSeqSet', mode=MODE_TYPE) _TSeqSet__item_ = SEQ(name='_item_', mode=MODE_TYPE, typeref=ASN1RefType(('NCBI-TSeq', 'TSeq'))) TSeqSet._cont = _TSeqSet__item_ _all_ = [ _TSeq_seqtype, _TSeq_gi, _TSeq_accver, _TSeq_sid, _TSeq_local, _TSeq_taxid, _TSeq_orgname, _TSeq_defline, _TSeq_length, _TSeq_sequence, TSeq, _TSeqSet__item_, TSeqSet, ] class _IMPL_: _name_ = '_IMPL_' _oid_ = [] _obj_ = ['REAL', 'EXTERNAL', 'EMBEDDED PDV', 'CHARACTER STRING', 'TYPE-IDENTIFIER', 'ABSTRACT-SYNTAX'] #-----< REAL >-----# REAL = SEQ(name='REAL', mode=MODE_TYPE) _REAL_mantissa = INT(name='mantissa', mode=MODE_TYPE) _REAL_base = INT(name='base', mode=MODE_TYPE) _REAL_base._const_val = ASN1Set(rv=[2, 10], rr=[], ev=None, er=[]) _REAL_exponent = INT(name='exponent', mode=MODE_TYPE) REAL._cont = ASN1Dict([ ('mantissa', _REAL_mantissa), ('base', _REAL_base), ('exponent', _REAL_exponent), ]) REAL._ext = None #-----< EXTERNAL >-----# EXTERNAL = SEQ(name='EXTERNAL', mode=MODE_TYPE) _EXTERNAL_identification = CHOICE(name='identification', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EXTERNAL_identification_syntaxes = SEQ(name='syntaxes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EXTERNAL_identification_syntaxes_abstract = OID(name='abstract', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EXTERNAL_identification_syntaxes_transfer = OID(name='transfer', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EXTERNAL_identification_syntaxes._cont = ASN1Dict([ ('abstract', ___EXTERNAL_identification_syntaxes_abstract), ('transfer', ___EXTERNAL_identification_syntaxes_transfer), ]) __EXTERNAL_identification_syntaxes._ext = None __EXTERNAL_identification_syntax = OID(name='syntax', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EXTERNAL_identification_presentation_context_id = INT(name='presentation-context-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EXTERNAL_identification_context_negotiation = SEQ(name='context-negotiation', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EXTERNAL_identification_context_negotiation_presentation_context_id = INT(name='presentation-context-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EXTERNAL_identification_context_negotiation_transfer_syntax = OID(name='transfer-syntax', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EXTERNAL_identification_context_negotiation._cont = ASN1Dict([ ('presentation-context-id', ___EXTERNAL_identification_context_negotiation_presentation_context_id), ('transfer-syntax', ___EXTERNAL_identification_context_negotiation_transfer_syntax), ]) __EXTERNAL_identification_context_negotiation._ext = None __EXTERNAL_identification_transfer_syntax = OID(name='transfer-syntax', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EXTERNAL_identification_fixed = NULL(name='fixed', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) _EXTERNAL_identification._cont = ASN1Dict([ ('syntaxes', __EXTERNAL_identification_syntaxes), ('syntax', __EXTERNAL_identification_syntax), ('presentation-context-id', __EXTERNAL_identification_presentation_context_id), ('context-negotiation', __EXTERNAL_identification_context_negotiation), ('transfer-syntax', __EXTERNAL_identification_transfer_syntax), ('fixed', __EXTERNAL_identification_fixed), ]) _EXTERNAL_identification._ext = None _EXTERNAL_data_value_descriptor = OBJ_DESC(name='data-value-descriptor', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) _EXTERNAL_data_value = OCT_STR(name='data-value', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) EXTERNAL._cont = ASN1Dict([ ('identification', _EXTERNAL_identification), ('data-value-descriptor', _EXTERNAL_data_value_descriptor), ('data-value', _EXTERNAL_data_value), ]) EXTERNAL._ext = None #-----< EMBEDDED PDV >-----# EMBEDDED_PDV = SEQ(name='EMBEDDED PDV', mode=MODE_TYPE) _EMBEDDED_PDV_identification = CHOICE(name='identification', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EMBEDDED_PDV_identification_syntaxes = SEQ(name='syntaxes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EMBEDDED_PDV_identification_syntaxes_abstract = OID(name='abstract', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EMBEDDED_PDV_identification_syntaxes_transfer = OID(name='transfer', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EMBEDDED_PDV_identification_syntaxes._cont = ASN1Dict([ ('abstract', ___EMBEDDED_PDV_identification_syntaxes_abstract), ('transfer', ___EMBEDDED_PDV_identification_syntaxes_transfer), ]) __EMBEDDED_PDV_identification_syntaxes._ext = None __EMBEDDED_PDV_identification_syntax = OID(name='syntax', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EMBEDDED_PDV_identification_presentation_context_id = INT(name='presentation-context-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EMBEDDED_PDV_identification_context_negotiation = SEQ(name='context-negotiation', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EMBEDDED_PDV_identification_context_negotiation_presentation_context_id = INT(name='presentation-context-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___EMBEDDED_PDV_identification_context_negotiation_transfer_syntax = OID(name='transfer-syntax', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EMBEDDED_PDV_identification_context_negotiation._cont = ASN1Dict([ ('presentation-context-id', ___EMBEDDED_PDV_identification_context_negotiation_presentation_context_id), ('transfer-syntax', ___EMBEDDED_PDV_identification_context_negotiation_transfer_syntax), ]) __EMBEDDED_PDV_identification_context_negotiation._ext = None __EMBEDDED_PDV_identification_transfer_syntax = OID(name='transfer-syntax', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __EMBEDDED_PDV_identification_fixed = NULL(name='fixed', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) _EMBEDDED_PDV_identification._cont = ASN1Dict([ ('syntaxes', __EMBEDDED_PDV_identification_syntaxes), ('syntax', __EMBEDDED_PDV_identification_syntax), ('presentation-context-id', __EMBEDDED_PDV_identification_presentation_context_id), ('context-negotiation', __EMBEDDED_PDV_identification_context_negotiation), ('transfer-syntax', __EMBEDDED_PDV_identification_transfer_syntax), ('fixed', __EMBEDDED_PDV_identification_fixed), ]) _EMBEDDED_PDV_identification._ext = None _EMBEDDED_PDV_data_value_descriptor = OBJ_DESC(name='data-value-descriptor', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT), opt=True) _EMBEDDED_PDV_data_value = OCT_STR(name='data-value', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) EMBEDDED_PDV._cont = ASN1Dict([ ('identification', _EMBEDDED_PDV_identification), ('data-value-descriptor', _EMBEDDED_PDV_data_value_descriptor), ('data-value', _EMBEDDED_PDV_data_value), ]) EMBEDDED_PDV._ext = None #-----< CHARACTER STRING >-----# CHARACTER_STRING = SEQ(name='CHARACTER STRING', mode=MODE_TYPE) _CHARACTER_STRING_identification = CHOICE(name='identification', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __CHARACTER_STRING_identification_syntaxes = SEQ(name='syntaxes', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___CHARACTER_STRING_identification_syntaxes_abstract = OID(name='abstract', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___CHARACTER_STRING_identification_syntaxes_transfer = OID(name='transfer', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __CHARACTER_STRING_identification_syntaxes._cont = ASN1Dict([ ('abstract', ___CHARACTER_STRING_identification_syntaxes_abstract), ('transfer', ___CHARACTER_STRING_identification_syntaxes_transfer), ]) __CHARACTER_STRING_identification_syntaxes._ext = None __CHARACTER_STRING_identification_syntax = OID(name='syntax', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __CHARACTER_STRING_identification_presentation_context_id = INT(name='presentation-context-id', mode=MODE_TYPE, tag=(2, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __CHARACTER_STRING_identification_context_negotiation = SEQ(name='context-negotiation', mode=MODE_TYPE, tag=(3, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___CHARACTER_STRING_identification_context_negotiation_presentation_context_id = INT(name='presentation-context-id', mode=MODE_TYPE, tag=(0, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) ___CHARACTER_STRING_identification_context_negotiation_transfer_syntax = OID(name='transfer-syntax', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __CHARACTER_STRING_identification_context_negotiation._cont = ASN1Dict([ ('presentation-context-id', ___CHARACTER_STRING_identification_context_negotiation_presentation_context_id), ('transfer-syntax', ___CHARACTER_STRING_identification_context_negotiation_transfer_syntax), ]) __CHARACTER_STRING_identification_context_negotiation._ext = None __CHARACTER_STRING_identification_transfer_syntax = OID(name='transfer-syntax', mode=MODE_TYPE, tag=(4, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) __CHARACTER_STRING_identification_fixed = NULL(name='fixed', mode=MODE_TYPE, tag=(5, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) _CHARACTER_STRING_identification._cont = ASN1Dict([ ('syntaxes', __CHARACTER_STRING_identification_syntaxes), ('syntax', __CHARACTER_STRING_identification_syntax), ('presentation-context-id', __CHARACTER_STRING_identification_presentation_context_id), ('context-negotiation', __CHARACTER_STRING_identification_context_negotiation), ('transfer-syntax', __CHARACTER_STRING_identification_transfer_syntax), ('fixed', __CHARACTER_STRING_identification_fixed), ]) _CHARACTER_STRING_identification._ext = None _CHARACTER_STRING_string_value = OCT_STR(name='string-value', mode=MODE_TYPE, tag=(1, TAG_CONTEXT_SPEC, TAG_EXPLICIT)) CHARACTER_STRING._cont = ASN1Dict([ ('identification', _CHARACTER_STRING_identification), ('string-value', _CHARACTER_STRING_string_value), ]) CHARACTER_STRING._ext = None #-----< TYPE-IDENTIFIER >-----# TYPE_IDENTIFIER = CLASS(name='TYPE-IDENTIFIER', mode=MODE_TYPE) _TYPE_IDENTIFIER_id = OID(name='id', mode=MODE_VALUE, uniq=True) _TYPE_IDENTIFIER_Type = OPEN(name='Type', mode=MODE_TYPE) TYPE_IDENTIFIER._cont = ASN1Dict([ ('id', _TYPE_IDENTIFIER_id), ('Type', _TYPE_IDENTIFIER_Type), ]) #-----< ABSTRACT-SYNTAX >-----# ABSTRACT_SYNTAX = CLASS(name='ABSTRACT-SYNTAX', mode=MODE_TYPE) _ABSTRACT_SYNTAX_id = OID(name='id', mode=MODE_VALUE) _ABSTRACT_SYNTAX_Type = OPEN(name='Type', mode=MODE_TYPE) _ABSTRACT_SYNTAX_property = BIT_STR(name='property', mode=MODE_VALUE, default=(0, 0)) _ABSTRACT_SYNTAX_property._cont = ASN1Dict([('handles-invalid-encodings', 0)]) ABSTRACT_SYNTAX._cont = ASN1Dict([ ('id', _ABSTRACT_SYNTAX_id), ('Type', _ABSTRACT_SYNTAX_Type), ('property', _ABSTRACT_SYNTAX_property), ]) _all_ = [ _REAL_mantissa, _REAL_base, _REAL_exponent, REAL, ___EXTERNAL_identification_syntaxes_abstract, ___EXTERNAL_identification_syntaxes_transfer, __EXTERNAL_identification_syntaxes, __EXTERNAL_identification_syntax, __EXTERNAL_identification_presentation_context_id, ___EXTERNAL_identification_context_negotiation_presentation_context_id, ___EXTERNAL_identification_context_negotiation_transfer_syntax, __EXTERNAL_identification_context_negotiation, __EXTERNAL_identification_transfer_syntax, __EXTERNAL_identification_fixed, _EXTERNAL_identification, _EXTERNAL_data_value_descriptor, _EXTERNAL_data_value, EXTERNAL, ___EMBEDDED_PDV_identification_syntaxes_abstract, ___EMBEDDED_PDV_identification_syntaxes_transfer, __EMBEDDED_PDV_identification_syntaxes, __EMBEDDED_PDV_identification_syntax, __EMBEDDED_PDV_identification_presentation_context_id, ___EMBEDDED_PDV_identification_context_negotiation_presentation_context_id, ___EMBEDDED_PDV_identification_context_negotiation_transfer_syntax, __EMBEDDED_PDV_identification_context_negotiation, __EMBEDDED_PDV_identification_transfer_syntax, __EMBEDDED_PDV_identification_fixed, _EMBEDDED_PDV_identification, _EMBEDDED_PDV_data_value_descriptor, _EMBEDDED_PDV_data_value, EMBEDDED_PDV, ___CHARACTER_STRING_identification_syntaxes_abstract, ___CHARACTER_STRING_identification_syntaxes_transfer, __CHARACTER_STRING_identification_syntaxes, __CHARACTER_STRING_identification_syntax, __CHARACTER_STRING_identification_presentation_context_id, ___CHARACTER_STRING_identification_context_negotiation_presentation_context_id, ___CHARACTER_STRING_identification_context_negotiation_transfer_syntax, __CHARACTER_STRING_identification_context_negotiation, __CHARACTER_STRING_identification_transfer_syntax, __CHARACTER_STRING_identification_fixed, _CHARACTER_STRING_identification, _CHARACTER_STRING_string_value, CHARACTER_STRING, _TYPE_IDENTIFIER_id, _TYPE_IDENTIFIER_Type, TYPE_IDENTIFIER, _ABSTRACT_SYNTAX_id, _ABSTRACT_SYNTAX_Type, _ABSTRACT_SYNTAX_property, ABSTRACT_SYNTAX, ] init_modules(NCBI_Access, NCBI_Biblio, NCBI_BioTree, NCBI_Blast4, NCBI_BlastDL, NCBI_BlastOutput2, NCBI_BlastOutput, NCBI_Cdd, NCBI_Cn3d, Docsum_3_4, NCBI_Entrez2, NCBI_Entrezgene, NCBI_FeatDef, NCBI_GBSeq, NCBI_General, HomoloGene, NCBI_ID1Access, NCBI_ID2Access, INSD_INSDSeq, NCBI_Medlars, NCBI_Medline, NCBI_Mim, NCBI_MedArchive, MMDB, MMDB_Chemical_graph, MMDB_Structural_model, MMDB_Features, NCBI_Mime, NCBI_ObjPrt, OMSSA, NCBI_PCAssay, NCBI_PCSubstance, NCBI_Project, NCBI_Pub, NCBI_PubMed, NCBI_Remap, NCBI_ScoreMat, NCBI_Seqalign, NCBI_Sequence, EMBL_General, SP_General, PIR_General, GenBank_General, PRF_General, PDB_General, NCBI_SeqCode, NCBI_Seqfeat, NCBI_Variation, NCBI_Rsite, NCBI_RNA, NCBI_Gene, NCBI_Organism, NCBI_BioSource, NCBI_Protein, NCBI_TxInit, NCBI_Seqloc, NCBI_Seqres, NCBI_Seqset, NCBI_Seq_split, NCBI_SeqTable, NCBI_Submit, NCBI_TSeq, _IMPL_)